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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1103262..1105092 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03730.1 vs.
Match: EWM29809.1 (Nascent polypeptide-associated complex NAC [Nannochloropsis gaditana]) HSP 1 Score: 279.3 bits (713), Expect = 1.200e-71 Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 0
Query: 84 MADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVL--VEEGEEEEDDDDAVPDLVENFEAVST 252
MAD IDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHK SSTADDKKLGATLKKLGVTNIPGIEEANMFKN GEVIHFRNPKVQASIQAKTYVISG AETK+IQ+LLPGIIQQLGG+NIQALSKQ E +GGG+DP L +EEGE EEDDDDAVPDLVENFEAVST
Sbjct: 1 MADGIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKTSSTADDKKLGATLKKLGVTNIPGIEEANMFKNTGEVIHFRNPKVQASIQAKTYVISGAAETKSIQDLLPGIIQQLGGENIQALSKQLGE-LAKGGGLDPALAGMEEGENEEDDDDAVPDLVENFEAVST 169
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03730.1 ID=NO03G03730.1|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp AGCCCCCCGCGCGACCGCGAGTTCCCCAGAGCCATCGCCTTCAGTGCGCC TCGCTTCGCTCCGCTCTCCTATGCCTTTCTTCTTCTTTGCCTTCATAAAG CAATGTCTACGCACCCTCCCAAACGGAAGGAAACAGAGCTCATGCTTGAT GAAGGGAGAACTATTGGTCGCAGGGTGGAGACGGGTGGCTGGGGGGAGTG GAGGACCGCACACTTTTAGCCTCCTCACCCCCTTCTTCTTCCTCATCGAT CATCTCGTGGCTTCACTTTTCTAACACACCTGTAGACCTGGAGGATGAAC ACGTTCATAGAGGGCAATATAGCTCGCACTCGCTTGTTGTTGGGATATGC TAAAAGCGCCCGATCTATTCCCGGGGTCGTCGTTGCAGGGCAACCTCACA TGAACGCGAGTATCATCGTCCTCATCACGTGCCTTGCTTTCTTCCTTGAT CCTCACACAACGCTTCCCGACTCAACACACGCACCAATACAGGGCAGTTG CTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTAGCAACATGGCGG ATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGCGCTTTGGAGGC GCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGGCGGAAGCGCAA GGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAAGCTTGGTGCTA CATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTGAGGAGGCGAAT ATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAATCCTAAGGTGCA AGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTCCGGCTGAGACGA AGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAGCTGGGTGGGGAT AACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTACGGGCAGGGGGG TGGGATCGACCCGGTCCTGGTTGAGGAGGGGGAAGAGGAAGAGGATGATG ACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGGCCGTGTCCACCTAG ATCTATCAGCACCAGGAACTGTTCCAACAATGGACAGCGACTAGGAGATG AAGATAAACAGCTGCTCCATTCCCTTTTCCTTATCTGCGTCCAAATTAGT TCTTTGTCAGGGTTGGGGAGGAGGAGAGGGTAAACATGCAGAGGATGGAT AGGGGAGGTGACTCCCATGCATCGTTTGTTTGTTCTCTCTTCTGTTTGAA CGGATCAAAGAGACTCTCTGTAGAGAATTAAGAAAGTCTTTTTAATCCTG TCTCTCCTCTCAAACAATAATAAATCACATTTTAAAAGGAGAAGGCAGGT GGGAGAGATGGAGGGGAGGAGGGGAGGGTGAAGGGAGGGAGGGCATTCGT CATCCATAGGTTGTCCAGAAAGAGGATGATGTGAAACAGGTAAAAGAAAA TTAGGTATGGAGAGATAAGCTGGTAACGATGAGACCAGAAGCAACAGGAA ACAAAAAGAAAGAAGACAACAACCGACAAGAAACAAAACGTTTTAAGAAA AT back to topprotein sequence of NO03G03730.1 >NO03G03730.1-protein ID=NO03G03730.1-protein|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp MNTFIEGNIARTRLLLGYAKSARSIPGVVVAGQPHMNASIIVLITCLAFF LDPHTTLPDSTHAPIQGSCCSSSSSSRRGITSNMADEIDAARARMIAKRF GGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEE ANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLG GDNIQALSKQFSEQYGQGGGIDPVLVEEGEEEEDDDDAVPDLVENFEAVS T* back to topmRNA from alignment at chr3:1103262..1105092- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03730.1 ID=NO03G03730.1|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr3:1103262..1105092- (Nannochloropsis oceanica) AGCCCCCCGCGCGACCGCGAGTTCCCCAGAGCCATCGCCTTCAGTGCGCC
TCGCTTCGCTCCGCTCTCCTATGCCTTTCTTCTTCTTTGCCTTCATAAAG
CAATGTCTACGCACCCTCCCAAACGGAAGGAAACAGAGCTCATGCTTGAT
GAAGGGAGAACTATTGGTCGCAGGGTGGAGACGGGTGGCTGGGGGGAGTG
GAGGACCGCACACTTTTAGCCTCCTCACCCCCTTCTTCTTCCTCATCGAT
CATCTCGTGGCTTCACTTTTCTAACACACCTGTAGACCTGGAGGATGAAC
ACGTTCATAGAGGGCAATATAGCTCGCACTCGCTTGTTGTTGGGATATGC
TAAAAGCGCCCGATCTATTCCCGGGGTCGTCGTTGCAGGGCAACCTCACA
TGAACGCGAGTATCATCGTCCTCATCACGTGCCTTGCTTTCTTCCTTGAT
CCTCACACAACGCTTCCCGACTCAACACACGCACCAATACAGGGCAGTTG
CTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTAGCAACATGGCGG
ATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGCGCTTTGGAGGC
GCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGGCGGAAGCGCAA
GGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAAGCTTGGTGCTA
CATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTGAGGAGGCGAAT
ATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAATCCTAAGGGTGA
GTTGGTTGAGGCACAGAAGTGAAGAACAGACGGAAGGGAAGGCATGCGCA
TGCCCATCAGAAGGAGTTTTTGTGTATGGTAGTATTGGAGAAAGAACTGT
AGAAATTGAAAACGCGCGGTGACGCGTTCTTTCCCCTTCCTCCTCTCCCA
CCCAGTGCAAGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTCCGG
CTGAGACGAAGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAGCTG
GGTGGGGATAACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTACGG
GCAGGGGGGTGGGATCGACCCGGTCCTGGTTGAGGAGGGGGAAGAGGAAG
AGGATGATGACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGGTAGGC
TTTGGAGGAAGGCTATAATATTACAATCATTAGTGTTGCTTCAAAGAAAA
GAGGGTTGATGAATTCATGCTTATCATTTCTTCTTTACCGAACCAACATG
AAATGCACTCCCAGGCCGTGTCCACCTAGATCTATCAGCACCAGGAACTG
TTCCAACAATGGACAGCGACTAGGAGATGAAGATAAACAGCTGCTCCATT
CCCTTTTCCTTATCTGCGTCCAAATTAGTTCTTTGTCAGGGTTGGGGAGG
AGGAGAGGGTAAACATGCAGAGGATGGATAGGGGAGGTGACTCCCATGCA
TCGTTTGTTTGTTCTCTCTTCTGTTTGAACGGATCAAAGAGACTCTCTGT
AGAGAATTAAGAAAGTCTTTTTAATCCTGTCTCTCCTCTCAAACAATAAT
AAATCACATTTTAAAAGGAGAAGGCAGGTGGGAGAGATGGAGGGGAGGAG
GGGAGGGTGAAGGGAGGGAGGGCATTCGTCATCCATAGGTTGTCCAGAAA
GAGGATGATGTGAAACAGGTAAAAGAAAATTAGGTATGGAGAGATAAGCT
GGTAACGATGAGACCAGAAGCAACAGGAAACAAAAAGAAAGAAGACAACA
ACCGACAAGAAACAAAACGTTTTAAGAAAAT back to topCoding sequence (CDS) from alignment at chr3:1103262..1105092- >NO03G03730.1 ID=NO03G03730.1|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr3:1103262..1105092- (Nannochloropsis oceanica) ATGAACACGTTCATAGAGGGCAATATAGCTCGCACTCGCTTGTTGTTGGG ATATGCTAAAAGCGCCCGATCTATTCCCGGGGTCGTCGTTGCAGGGCAAC CTCACATGAACGCGAGTATCATCGTCCTCATCACGTGCCTTGCTTTCTTC CTTGATCCTCACACAACGCTTCCCGACTCAACACACGCACCAATACAGGG CAGTTGCTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTAGCAACA TGGCGGATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGCGCTTT GGAGGCGCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGGCGGAA GCGCAAGGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAAGCTTG GTGCTACATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTGAGGAG GCGAATATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAATCCTAA GGTGCAAGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTCCGGCTG AGACGAAGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAGCTGGGT GGGGATAACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTACGGGCA GGGGGGTGGGATCGACCCGGTCCTGGTTGAGGAGGGGGAAGAGGAAGAGG ATGATGACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGGCCGTGTCC ACCTAG back to top
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