NO03G03730.1, NO03G03730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03730.1
Unique NameNO03G03730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1552
Alignment locationchr3:1103262..1105092 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1103262..1105092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G03730.1 vs.
Match: EWM29809.1 (Nascent polypeptide-associated complex NAC [Nannochloropsis gaditana])

HSP 1 Score: 279.3 bits (713), Expect = 1.200e-71
Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 0
Query:   84 MADEIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEEANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLGGDNIQALSKQFSEQYGQGGGIDPVL--VEEGEEEEDDDDAVPDLVENFEAVST 252
            MAD IDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHK SSTADDKKLGATLKKLGVTNIPGIEEANMFKN GEVIHFRNPKVQASIQAKTYVISG AETK+IQ+LLPGIIQQLGG+NIQALSKQ  E   +GGG+DP L  +EEGE EEDDDDAVPDLVENFEAVST
Sbjct:    1 MADGIDAARARMIAKRFGGAENVRTGGKGTVRRKRKAQHKTSSTADDKKLGATLKKLGVTNIPGIEEANMFKNTGEVIHFRNPKVQASIQAKTYVISGAAETKSIQDLLPGIIQQLGGENIQALSKQLGE-LAKGGGLDPALAGMEEGENEEDDDDAVPDLVENFEAVST 169          
The following BLAST results are available for this feature:
BLAST of NO03G03730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29809.11.200e-7188.82Nascent polypeptide-associated complex NAC [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03730NO03G03730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03730.1NO03G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03730.1.cds1NO03G03730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03730.1.cds2NO03G03730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03730.1.cds3NO03G03730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03730.1 ID=NO03G03730.1|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp
AGCCCCCCGCGCGACCGCGAGTTCCCCAGAGCCATCGCCTTCAGTGCGCC
TCGCTTCGCTCCGCTCTCCTATGCCTTTCTTCTTCTTTGCCTTCATAAAG
CAATGTCTACGCACCCTCCCAAACGGAAGGAAACAGAGCTCATGCTTGAT
GAAGGGAGAACTATTGGTCGCAGGGTGGAGACGGGTGGCTGGGGGGAGTG
GAGGACCGCACACTTTTAGCCTCCTCACCCCCTTCTTCTTCCTCATCGAT
CATCTCGTGGCTTCACTTTTCTAACACACCTGTAGACCTGGAGGATGAAC
ACGTTCATAGAGGGCAATATAGCTCGCACTCGCTTGTTGTTGGGATATGC
TAAAAGCGCCCGATCTATTCCCGGGGTCGTCGTTGCAGGGCAACCTCACA
TGAACGCGAGTATCATCGTCCTCATCACGTGCCTTGCTTTCTTCCTTGAT
CCTCACACAACGCTTCCCGACTCAACACACGCACCAATACAGGGCAGTTG
CTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTAGCAACATGGCGG
ATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGCGCTTTGGAGGC
GCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGGCGGAAGCGCAA
GGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAAGCTTGGTGCTA
CATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTGAGGAGGCGAAT
ATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAATCCTAAGGTGCA
AGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTCCGGCTGAGACGA
AGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAGCTGGGTGGGGAT
AACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTACGGGCAGGGGGG
TGGGATCGACCCGGTCCTGGTTGAGGAGGGGGAAGAGGAAGAGGATGATG
ACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGGCCGTGTCCACCTAG
ATCTATCAGCACCAGGAACTGTTCCAACAATGGACAGCGACTAGGAGATG
AAGATAAACAGCTGCTCCATTCCCTTTTCCTTATCTGCGTCCAAATTAGT
TCTTTGTCAGGGTTGGGGAGGAGGAGAGGGTAAACATGCAGAGGATGGAT
AGGGGAGGTGACTCCCATGCATCGTTTGTTTGTTCTCTCTTCTGTTTGAA
CGGATCAAAGAGACTCTCTGTAGAGAATTAAGAAAGTCTTTTTAATCCTG
TCTCTCCTCTCAAACAATAATAAATCACATTTTAAAAGGAGAAGGCAGGT
GGGAGAGATGGAGGGGAGGAGGGGAGGGTGAAGGGAGGGAGGGCATTCGT
CATCCATAGGTTGTCCAGAAAGAGGATGATGTGAAACAGGTAAAAGAAAA
TTAGGTATGGAGAGATAAGCTGGTAACGATGAGACCAGAAGCAACAGGAA
ACAAAAAGAAAGAAGACAACAACCGACAAGAAACAAAACGTTTTAAGAAA
AT
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protein sequence of NO03G03730.1

>NO03G03730.1-protein ID=NO03G03730.1-protein|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MNTFIEGNIARTRLLLGYAKSARSIPGVVVAGQPHMNASIIVLITCLAFF
LDPHTTLPDSTHAPIQGSCCSSSSSSRRGITSNMADEIDAARARMIAKRF
GGAENVRTGGKGTVRRKRKAQHKNSSTADDKKLGATLKKLGVTNIPGIEE
ANMFKNNGEVIHFRNPKVQASIQAKTYVISGPAETKTIQELLPGIIQQLG
GDNIQALSKQFSEQYGQGGGIDPVLVEEGEEEEDDDDAVPDLVENFEAVS
T*
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mRNA from alignment at chr3:1103262..1105092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03730.1 ID=NO03G03730.1|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr3:1103262..1105092- (Nannochloropsis oceanica)
AGCCCCCCGCGCGACCGCGAGTTCCCCAGAGCCATCGCCTTCAGTGCGCC TCGCTTCGCTCCGCTCTCCTATGCCTTTCTTCTTCTTTGCCTTCATAAAG CAATGTCTACGCACCCTCCCAAACGGAAGGAAACAGAGCTCATGCTTGAT GAAGGGAGAACTATTGGTCGCAGGGTGGAGACGGGTGGCTGGGGGGAGTG GAGGACCGCACACTTTTAGCCTCCTCACCCCCTTCTTCTTCCTCATCGAT CATCTCGTGGCTTCACTTTTCTAACACACCTGTAGACCTGGAGGATGAAC ACGTTCATAGAGGGCAATATAGCTCGCACTCGCTTGTTGTTGGGATATGC TAAAAGCGCCCGATCTATTCCCGGGGTCGTCGTTGCAGGGCAACCTCACA TGAACGCGAGTATCATCGTCCTCATCACGTGCCTTGCTTTCTTCCTTGAT CCTCACACAACGCTTCCCGACTCAACACACGCACCAATACAGGGCAGTTG CTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTAGCAACATGGCGG ATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGCGCTTTGGAGGC GCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGGCGGAAGCGCAA GGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAAGCTTGGTGCTA CATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTGAGGAGGCGAAT ATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAATCCTAAGGGTGA GTTGGTTGAGGCACAGAAGTGAAGAACAGACGGAAGGGAAGGCATGCGCA TGCCCATCAGAAGGAGTTTTTGTGTATGGTAGTATTGGAGAAAGAACTGT AGAAATTGAAAACGCGCGGTGACGCGTTCTTTCCCCTTCCTCCTCTCCCA CCCAGTGCAAGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTCCGG CTGAGACGAAGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAGCTG GGTGGGGATAACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTACGG GCAGGGGGGTGGGATCGACCCGGTCCTGGTTGAGGAGGGGGAAGAGGAAG AGGATGATGACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGGTAGGC TTTGGAGGAAGGCTATAATATTACAATCATTAGTGTTGCTTCAAAGAAAA GAGGGTTGATGAATTCATGCTTATCATTTCTTCTTTACCGAACCAACATG AAATGCACTCCCAGGCCGTGTCCACCTAGATCTATCAGCACCAGGAACTG TTCCAACAATGGACAGCGACTAGGAGATGAAGATAAACAGCTGCTCCATT CCCTTTTCCTTATCTGCGTCCAAATTAGTTCTTTGTCAGGGTTGGGGAGG AGGAGAGGGTAAACATGCAGAGGATGGATAGGGGAGGTGACTCCCATGCA TCGTTTGTTTGTTCTCTCTTCTGTTTGAACGGATCAAAGAGACTCTCTGT AGAGAATTAAGAAAGTCTTTTTAATCCTGTCTCTCCTCTCAAACAATAAT AAATCACATTTTAAAAGGAGAAGGCAGGTGGGAGAGATGGAGGGGAGGAG GGGAGGGTGAAGGGAGGGAGGGCATTCGTCATCCATAGGTTGTCCAGAAA GAGGATGATGTGAAACAGGTAAAAGAAAATTAGGTATGGAGAGATAAGCT GGTAACGATGAGACCAGAAGCAACAGGAAACAAAAAGAAAGAAGACAACA ACCGACAAGAAACAAAACGTTTTAAGAAAAT
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Coding sequence (CDS) from alignment at chr3:1103262..1105092-

>NO03G03730.1 ID=NO03G03730.1|Name=NO03G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr3:1103262..1105092- (Nannochloropsis oceanica)
ATGAACACGTTCATAGAGGGCAATATAGCTCGCACTCGCTTGTTGTTGGG
ATATGCTAAAAGCGCCCGATCTATTCCCGGGGTCGTCGTTGCAGGGCAAC
CTCACATGAACGCGAGTATCATCGTCCTCATCACGTGCCTTGCTTTCTTC
CTTGATCCTCACACAACGCTTCCCGACTCAACACACGCACCAATACAGGG
CAGTTGCTGTAGCAGCAGCAGTAGCAGCCGCCGCGGCATTACTAGCAACA
TGGCGGATGAGATTGACGCCGCCCGCGCTCGCATGATTGCCAAGCGCTTT
GGAGGCGCGGAGAACGTGAGAACAGGAGGGAAGGGCACGGTCCGGCGGAA
GCGCAAGGCACAGCACAAGAACTCTTCGACGGCGGATGACAAAAAGCTTG
GTGCTACATTGAAGAAGCTGGGCGTGACTAACATCCCGGGCATTGAGGAG
GCGAATATGTTCAAGAACAATGGCGAAGTCATCCACTTCAGGAATCCTAA
GGTGCAAGCGTCCATCCAAGCCAAAACGTACGTGATCAGCGGTCCGGCTG
AGACGAAGACGATCCAAGAATTATTGCCCGGCATCATTCAGCAGCTGGGT
GGGGATAACATCCAAGCGTTGAGCAAGCAATTCAGCGAGCAGTACGGGCA
GGGGGGTGGGATCGACCCGGTCCTGGTTGAGGAGGGGGAAGAGGAAGAGG
ATGATGACGATGCCGTGCCTGATTTGGTGGAGAATTTCGAGGCCGTGTCC
ACCTAG
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Synonyms
Publications