NO03G03440, NO03G03440 (gene) Nannochloropsis oceanica

Overview
NameNO03G03440
Unique NameNO03G03440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3702
Alignment locationchr3:1031558..1035259 -

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Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1031558..1035259 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO03G03440 vs. NCBI_GenBank
Match: EWM29823.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1246.9 bits (3225), Expect = 0.000e+0
Identity = 707/1086 (65.10%), Postives = 830/1086 (76.43%), Query Frame = 0 
Query:   17 TLICLLLCAANAVVQAFSHPAAFCAAWSTQRLVHRIHAADENEAAGSTTSSPASITSKESKASAAFISPAIPTSSSVGDLLEYLGDQNTRRRAARRLIKRPEQVPAEGLVELLKATCRLGNTNGCQKLLAMLRAMGTPPHISLYEALLKMSNKRYTWDLSLALLHEAEQEDGLPLTPGMLGGTLYTCLQSGRPHEAVKLLKRFKKHDSKPLVSLLMFMIRLLSDKGLVPALREVSAALATLGVEGDAALYTSLVAAFGRAGSYEDVVSSAVLVEGKGVADKGRIYSSAVAALLEGDLPSPARELYKRALRDGAVISRKGYEVMIAGASRASDPSQAVFFLQEFTXXXXXXXXXXXXXXXEGTRGEGDQRMDGNPVPAKVYWRPISACLRAKRLTTAADLVLEYYNDVAGTASDPVPLNNLIRATCDSGSAEDQTLAVRVYEAIVASQDGNVFVGNSYTSMILIGAYRRTQELDKIVGLHKAMLAAGVDVWLPAASNVMYAYAKQGDVEAEFETFQALASSTAQ-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHLLLWERLLSRAMYLSSEHHRLDMASLILSLLQRYRYLRASGPTDYMNLIKVFSQASRPGDALQVMVLMNQRKGEAKPSTLHYNAVLHAFTRLERMADAEAVFEEMRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLRNRTQANGLLTRFRTLAGDPEEASNDIMFGAFMHALAKADVKSRREALELLETFKASGRTPNTIMYNEAMYVTYRLVRDDPTGMSERALRLYHEMLSHGPSSMPNPLTYRRLFKCLKQACRFQELADVAATLPREMLVKHDRLGVPAILASLRVGQSDRARDLLGDLVLKPNTSYDTYRWATFVYCTKLDPPDLAAAETILGLVEEQGWKADRGFYGSLLRGCWAANPKQIEKAFDVYHNLPPAFQGGDPAAVAALCHVDRGRLDRVAGLLQEMRDRDDVAGADILVTLLESLLISESWKNALSVVDVIIDFELSMTRSQRRQIEALVHGNPKGPALEVLERLALLPVRHEGEVEG 1092
            TLIC +LCAA    QAF  P+  C      RL HR+H A  N+A  +  SS A   SK  K S++FIS  IP S+SVGDLLEYLGD +TRRRAARRL+++ EQVPA+GLV LLKATCRLGNTNG QK+LAMLR  GT P  +LYEALL+++NKRY WDLSLALL EAEQ D L LT  MLGGTLYTCLQ  R  EAVKLLKRF++H + P  +L++ M+RLLSDK +VPALREV  A+  L VEGDA LYT LV+AFGRA SY+DVV+SA LVEG GV +KGRIYS+AVA+LL+G+L +PAR+LY +AL DGAVI  KG+E ++AGA+ ++DP + VF+L E                   +  EG     G  VPA VY R I ACLR++ L+ AADLV+EYY+      +D VP NNL++A CD+GSA+D+ LAV+V+EA+ A Q    FVGNS+TSM+LIGAYRR QELDKIV +H++M  A VDVWLPAA N+M+AYA+QG VE E +TFQALA+S AQ                                           KHL LW R+LSRAMYLS+E  RLD+ASL+L+LLQ+Y  LRA+ P DYMNLIK F QA RPGDAL+V+ +MNQ KG+AKPSTLHYNAVLHAF+R+ER+ +AEAVF+EMRM        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLRNRT ANGLLTR RTLAGDP+E  ND+MFGA MHAL KADV SRREAL LLETFK+ GRTPNTIMYNEA++ TYRLVR+DP GM+E+AL LYHEML+ G +S P+PLTYRRLFKCLKQACRFQEL DVAA+LPREMLV  +RLG+P I+ASLR GQ DRARDLLGDLVLKPNTSY TYRWATF+YC KLDPPD+AAAETI+GLVEEQGWK DRGFY SLLRGCW + PKQIEKAFDVYHN+P  +QGGDPAAVAALCHVDRGRLDRV  LL+ MR+R+DVA  D+L TLL +LL  ESWKNALSVV+++IDF++++T  QRR+I +LVH NPKGPALEVLE L LL VR+     G
Sbjct:   14 TLICAMLCAATVTAQAFIGPSTPCFKPWILRLSHRLHEASNNQAGTAPPSSQAIAPSK--KPSSSFISKTIPPSASVGDLLEYLGDHSTRRRAARRLLRQSEQVPADGLVALLKATCRLGNTNGSQKILAMLRETGTQPDAALYEALLRIANKRYMWDLSLALLCEAEQRDALTLTSAMLGGTLYTCLQCARAQEAVKLLKRFEQHGATPGSNLMVLMVRLLSDKNMVPALREVRKAIGALSVEGDARLYTELVSAFGRASSYDDVVASARLVEGTGVVEKGRIYSTAVASLLKGNLTAPARKLYIQALEDGAVIGGKGFEALVAGAAASTDPLEGVFYLNEM---------RKHVASAPASEAEGSME-KGLLVPAHVYRRLIGACLRSRHLSEAADLVIEYYSQSPAAFADAVPFNNLVKAICDAGSAQDRALAVQVFEALSAVQPAGAFVGNSFTSMVLIGAYRRVQELDKIVAMHESMRRADVDVWLPAAGNIMHAYARQGKVEEELDTFQALAASPAQVVLGESRKHLGAKGKRKKTPFAANPSPLLASSTVEAPSSSKEEKHLFLWSRILSRAMYLSAELGRLDVASLVLALLQKYSGLRAASPADYMNLIKAFGQAKRPGDALRVLHVMNQGKGDAKPSTLHYNAVLHAFSRVERLEEAEAVFQEMRMRQVPMDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRNRTLANGLLTRLRTLAGDPQETWNDVMFGAHMHALVKADVASRREALALLETFKSGGRTPNTIMYNEALHATYRLVREDPEGMAEKALGLYHEMLAQGQASAPSPLTYRRLFKCLKQACRFQELVDVAASLPREMLVSQERLGIPVIVASLRAGQPDRARDLLGDLVLKPNTSYSTYRWATFIYCAKLDPPDVAAAETIIGLVEEQGWKPDRGFYASLLRGCWLSAPKQIEKAFDVYHNMPLEYQGGDPAAVAALCHVDRGRLDRVTELLRAMRERNDVAAPDLLATLLGNLLSCESWKNALSVVELMIDFDIALTPPQRRKITSLVHANPKGPALEVLEGLGLLRVRNGDHANG 1087
The following BLAST results are available for this feature:
BLAST of NO03G03440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29823.10.000e+065.10Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005552NSK005552Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03440.1NO03G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572635gene_1538Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g88gene854Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03440.1NO03G03440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03440 ID=NO03G03440|Name=NO03G03440|organism=Nannochloropsis oceanica|type=gene|length=3702bp
GCTCGTATATACCGATTTGCTTGGTTTTTCGAAAAATAGTGGCTTCTAGT
GAGGAAGCTCAGTATCCGAAGCCTTTCCATTCCTTGTCCCACCCCGACAA
ATTGCTATGCCGACGCTCATATGCTCTCTCTGCTCCTTCCTTCACGTTCA
CACAGGCGCTTTTCATATTTACAACCACGAACGACAAGCAAGCAACCATG
GCACGGCAGTAGAGACAAGCAAGCAAGCCCGCAGCCATGATGATGATGGG
AAGGAGAAAAGATGGGGTCGCAGCAGCCGCCTGGACTCTCATTTGCTTGC
TGCTATGTGCCGCCAACGCCGTCGTACAAGCCTTTAGCCATCCTGCTGCC
TTCTGCGCTGCATGGTCTACCCAACGCTTGGTTCACAGGATCCATGCGGC
GGATGAGAATGAAGCCGCAGGATCAACGACGTCCTCCCCCGCCTCCATCA
CCTCCAAGGAAAGCAAGGCTTCCGCCGCCTTCATCTCGCCCGCCATACCA
ACATCTTCATCGGTGGGGGACCTACTCGAGTATCTGGGGGACCAAAATAC
GCGGCGGCGAGCAGCCCGCCGTCTTATAAAGCGGCCAGAGCAGGTTCCTG
CGGAGGGGCTGGTCGAGTTGCTGAAAGCCACCTGCAGGCTGGGTAACACC
AACGGTTGTCAGAAGCTCCTGGCCATGCTACGGGCCATGGGCACGCCTCC
CCATATATCCCTGTATGAGGCCTTGCTTAAGATGTCCAATAAGCGCTACA
CCTGGGACCTGTCGCTAGCCTTGCTGCATGAGGCGGAGCAAGAAGACGGC
CTGCCGTTGACGCCGGGCATGCTGGGCGGCACCCTCTACACCTGCTTGCA
GAGCGGTCGACCCCACGAGGCTGTAAAGCTCCTCAAGCGTTTCAAAAAAC
ACGACAGCAAGCCTTTGGTATCCCTACTGATGTTCATGATTCGACTGTTG
AGTGACAAGGGCCTGGTGCCAGCTCTGCGGGAAGTGAGCGCGGCATTGGC
CACCCTGGGTGTGGAGGGAGATGCGGCGCTGTACACATCGCTGGTGGCAG
CCTTTGGACGCGCGGGTAGCTATGAAGACGTGGTTTCCAGCGCGGTGTTA
GTGGAGGGCAAGGGAGTGGCAGACAAGGGGCGGATCTACAGCTCGGCGGT
CGCTGCGTTGTTGGAAGGAGACTTGCCGTCTCCCGCCCGGGAGCTGTACA
AGCGTGCTCTACGAGATGGGGCCGTGATAAGTCGCAAAGGATACGAGGTT
ATGATCGCGGGGGCGTCACGTGCAAGCGACCCGTCGCAAGCTGTTTTTTT
CTTGCAGGAATTCACAAGTGCCGTGGCCGCTGCGGCCGCGGCTGCTGCTC
CTGGGGGGCAAGAAGGGACGAGAGGCGAGGGCGATCAGAGGATGGACGGT
AACCCTGTACCTGCCAAAGTGTACTGGAGGCCTATTAGTGCCTGTCTCCG
CGCAAAGCGTCTGACAACAGCGGCAGATCTTGTGCTTGAATATTACAACG
ATGTGGCGGGCACTGCATCGGACCCCGTCCCTCTCAACAACCTGATCCGA
GCCACGTGCGACAGCGGCTCGGCCGAGGATCAAACTTTAGCGGTGCGTGT
GTATGAGGCCATAGTAGCGTCGCAGGATGGGAATGTCTTCGTGGGTAACA
GCTACACAAGCATGATTCTGATTGGGGCGTATCGCCGCACGCAGGAGCTG
GACAAGATAGTAGGCTTGCATAAAGCCATGCTTGCGGCGGGGGTTGATGT
ATGGCTCCCTGCGGCCAGCAATGTAATGTATGCATACGCCAAGCAAGGGG
ATGTGGAGGCAGAATTCGAGACTTTCCAAGCATTGGCATCGTCGACCGCT
CAAGTCCAGATGGTGGGGACTCAGAACAAGAGCAGTAGTAAGGGCAAGAA
GAAGGACGCTACCTCCGCGTCTGCCTCCTCCCCAACCCCACAACAGGAGA
AACATCTCCTCTTATGGGAGCGTCTGTTGTCACGCGCCATGTATCTATCG
TCGGAGCACCATCGCCTGGATATGGCCTCCTTGATTCTGTCTCTCCTGCA
AAGGTACCGGTACTTGCGTGCCAGCGGGCCGACGGACTACATGAATTTAA
TCAAGGTATTCAGCCAAGCTAGTCGGCCGGGGGATGCATTGCAGGTGATG
GTGCTAATGAACCAACGCAAGGGCGAAGCCAAGCCTTCGACCTTGCACTA
CAATGCAGTGCTGCACGCCTTCACAAGGTTGGAGCGGATGGCAGACGCCG
AGGCTGTGTTTGAAGAAATGAGGATGCGGCAAGTCTCTGCGGATGCTGCT
ACTTTCAACATGCTCATTTCGGGCTTTGAGCGCGCGCGGCAGCCAGATCG
GGCTTTGGCTTTTTACGAAGAGATGACCCGTCGGGGGATTAAAGCGGATG
CGTATGTGTTGAACAGTATGATTAGTGTGACGGCGGATTTGAGGAATCGC
ACGCAGGCGAATGGCCTTCTGACGCGCTTCAGAACGTTGGCGGGCGATCC
GGAAGAGGCTTCGAATGATATCATGTTCGGTGCATTCATGCATGCGTTGG
CCAAGGCAGATGTGAAAAGCCGACGTGAGGCCTTAGAATTGCTTGAGACA
TTCAAAGCGAGTGGGCGTACCCCCAACACGATCATGTACAATGAGGCGAT
GTACGTGACCTACCGTTTGGTGCGTGATGACCCGACGGGCATGTCGGAGA
GGGCTTTGCGTCTATATCACGAAATGCTCAGCCATGGGCCATCCTCGATG
CCGAACCCACTGACCTACCGCCGGCTTTTCAAGTGTCTGAAGCAAGCATG
TCGCTTCCAGGAGCTGGCGGACGTGGCTGCTACCTTACCGCGGGAGATGC
TGGTAAAACATGATCGCTTAGGTGTCCCTGCGATTCTCGCCTCCTTACGC
GTTGGCCAGTCGGACCGGGCGAGAGATCTGCTGGGGGACTTGGTCTTGAA
GCCAAACACAAGTTATGACACTTACCGGTGGGCCACGTTTGTCTATTGCA
CCAAGCTAGATCCGCCTGACCTGGCCGCAGCTGAAACCATCCTCGGCCTG
GTGGAGGAACAGGGGTGGAAGGCGGACCGAGGGTTCTATGGGTCTTTGCT
CCGTGGATGCTGGGCGGCGAATCCAAAGCAGATTGAGAAGGCATTTGATG
TATATCACAATTTGCCTCCAGCATTTCAGGGCGGGGACCCTGCAGCAGTA
GCAGCGCTCTGTCACGTGGATCGAGGTCGCCTGGATCGGGTTGCGGGCTT
GCTGCAAGAGATGCGAGATCGAGATGATGTCGCTGGGGCGGATATTCTCG
TGACATTGCTAGAGAGTTTGCTAATTAGTGAAAGCTGGAAGAATGCCCTG
TCGGTAGTAGATGTGATAATTGATTTTGAGCTATCCATGACACGCTCTCA
ACGTCGACAGATAGAGGCCCTGGTCCATGGCAACCCCAAGGGCCCAGCGT
TAGAAGTGCTCGAGAGGTTGGCTTTGTTACCTGTACGGCACGAAGGAGAA
GTGGAGGGTGTGCCGGTGGTGGAGGAAGATGAGGAAGAGGAGTGAGAGGT
CAGGATGAGCGGGTTAATAGTAGGGGGTAAGTAGAGGTCTAGCTTTTAAA
TTTCTCGTACGGGAAAGGACGATGACGATGACGTCAGTGTAAGTAAAGAA
TTAATGTAATTTGTAAACGAATATATATGCTTTCAGTATATATTGGCAGC
GC
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protein sequence of NO03G03440.1

>NO03G03440.1-protein ID=NO03G03440.1-protein|Name=NO03G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1103bp
MMMMGRRKDGVAAAAWTLICLLLCAANAVVQAFSHPAAFCAAWSTQRLVH
RIHAADENEAAGSTTSSPASITSKESKASAAFISPAIPTSSSVGDLLEYL
GDQNTRRRAARRLIKRPEQVPAEGLVELLKATCRLGNTNGCQKLLAMLRA
MGTPPHISLYEALLKMSNKRYTWDLSLALLHEAEQEDGLPLTPGMLGGTL
YTCLQSGRPHEAVKLLKRFKKHDSKPLVSLLMFMIRLLSDKGLVPALREV
SAALATLGVEGDAALYTSLVAAFGRAGSYEDVVSSAVLVEGKGVADKGRI
YSSAVAALLEGDLPSPARELYKRALRDGAVISRKGYEVMIAGASRASDPS
QAVFFLQEFTSAVAAAAAAAAPGGQEGTRGEGDQRMDGNPVPAKVYWRPI
SACLRAKRLTTAADLVLEYYNDVAGTASDPVPLNNLIRATCDSGSAEDQT
LAVRVYEAIVASQDGNVFVGNSYTSMILIGAYRRTQELDKIVGLHKAMLA
AGVDVWLPAASNVMYAYAKQGDVEAEFETFQALASSTAQVQMVGTQNKSS
SKGKKKDATSASASSPTPQQEKHLLLWERLLSRAMYLSSEHHRLDMASLI
LSLLQRYRYLRASGPTDYMNLIKVFSQASRPGDALQVMVLMNQRKGEAKP
STLHYNAVLHAFTRLERMADAEAVFEEMRMRQVSADAATFNMLISGFERA
RQPDRALAFYEEMTRRGIKADAYVLNSMISVTADLRNRTQANGLLTRFRT
LAGDPEEASNDIMFGAFMHALAKADVKSRREALELLETFKASGRTPNTIM
YNEAMYVTYRLVRDDPTGMSERALRLYHEMLSHGPSSMPNPLTYRRLFKC
LKQACRFQELADVAATLPREMLVKHDRLGVPAILASLRVGQSDRARDLLG
DLVLKPNTSYDTYRWATFVYCTKLDPPDLAAAETILGLVEEQGWKADRGF
YGSLLRGCWAANPKQIEKAFDVYHNLPPAFQGGDPAAVAALCHVDRGRLD
RVAGLLQEMRDRDDVAGADILVTLLESLLISESWKNALSVVDVIIDFELS
MTRSQRRQIEALVHGNPKGPALEVLERLALLPVRHEGEVEGVPVVEEDEE
EE*
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Synonyms
Publications