NO03G03420, NO03G03420 (gene) Nannochloropsis oceanica

Overview
NameNO03G03420
Unique NameNO03G03420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length369
Alignment locationchr3:1019762..1020130 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1019762..1020130 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
Homology
The following BLAST results are available for this feature:
BLAST of NO03G03420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03420.1NO03G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03420.1NO03G03420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03420 ID=NO03G03420|Name=NO03G03420|organism=Nannochloropsis oceanica|type=gene|length=369bp
ATGCGCATTCACGCAGCTCGCCTGGCCGGCCAACCTGACCACCAGCTCGA
GTGGTTCGCCGACTTCCTCCTCGCCATTGGCGAAAGGCGGCCCTCTGCCC
CCCCAGACCCGCTGCACAACCCACATGCAACGCCACCGCCTCCTTCTCAC
CACAATCATAGACTCATCCCGGTCTTCACGCCTCCCCCGCCCGAGTTGGC
CAACGACCTGAAATGCCTCATAAACCATATCTACGGCTCCTTCGACCCCG
CCAACCGAGACCACGACCACCTCATCGAACGCGCCATCCTCGCCCCTACT
AACAAAGACGTAGACGCCCTCAATGACGTGGCCGTTGCATCCTTTCCGGG
AAAAGAGCACGTCTTCTGA
back to top

protein sequence of NO03G03420.1

>NO03G03420.1-protein ID=NO03G03420.1-protein|Name=NO03G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MRIHAARLAGQPDHQLEWFADFLLAIGERRPSAPPDPLHNPHATPPPPSH
HNHRLIPVFTPPPPELANDLKCLINHIYGSFDPANRDHDHLIERAILAPT
NKDVDALNDVAVASFPGKEHVF*
back to top
Synonyms
Publications