NO03G03240, NO03G03240 (gene) Nannochloropsis oceanica

Overview
NameNO03G03240
Unique NameNO03G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1264
Alignment locationchr3:960518..961781 +

Link to JBrowse

Properties
Property NameValue
DescriptionPPPDE putative thiol peptidase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:960518..961781 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008580PPPDE_dom
Homology
BLAST of NO03G03240 vs. NCBI_GenBank
Match: EWM29734.1 (protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 291.6 bits (745), Expect = 2.200e-75
Identity = 146/214 (68.22%), Postives = 170/214 (79.44%), Query Frame = 0
Query:    3 SGPATGTGTTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKSARNESEIEKREMIRQATLARMEG 217
            +G +TG+GT VYLNVYDLH ANRYAH  G+GVYHTGVEIAG+EYTYAGGAGIFAM P+VAPGA FRESI LG ++DAP ALRRAL+ LR DFGPDDYSLVK NCNHF+ ALV+ELLGKPIP+Y+NRLA FGSFFSCFLP +MTSQAPV+QE         PSVQR++G  + T TAF GEG+R          ++SE E+RE IRQAT+ R+ G
Sbjct:    6 NGDSTGSGTMVYLNVYDLHAANRYAHPLGMGVYHTGVEIAGSEYTYAGGAGIFAMYPRVAPGATFRESIPLGTVLDAPRALRRALEALRSDFGPDDYSLVKLNCNHFSAALVMELLGKPIPAYVNRLAFFGSFFSCFLPVEMTSQAPVSQEGNSTGAAE-PSVQRFIGTSSGTRTAFSGEGVRSGSKASGVPADKSEYERRERIRQATMTRLAG 218          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: XP_012198138.1 (hypothetical protein SPRG_04142 [Saprolegnia parasitica CBS 223.65] >KDO30954.1 hypothetical protein SPRG_04142 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 176.4 bits (446), Expect = 1.000e-40
Identity = 94/206 (45.63%), Postives = 126/206 (61.17%), Query Frame = 0
Query:   11 TTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKSARNESEIE-KREMIRQATLARME 216
            T V LNVYDL  AN Y H  G+G +H+GV+IAG+EY++AGGAGIF   PK A GAVFRESI +G    +    R+ LD LR +F    Y+L+  NCN F+N L + LLG PIP+Y+NR+A  GSF SC LP ++T QAPV  +          S       P  +YT+FGG G+ + +G   S   + ++E +RE  R A + R+E
Sbjct:    7 TAVILNVYDLMEANAYTHGLGLGAFHSGVDIAGDEYSFAGGAGIFTCRPKQADGAVFRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLSCLLPRELTGQAPVEAD----------STPTTANTPRASYTSFGGSGISL-RGTAPSTDTDEDMEVRREKRRLAAMRRIE 201          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: XP_012212031.1 (hypothetical protein SPRG_17305 [Saprolegnia parasitica CBS 223.65] >KDO17263.1 hypothetical protein SPRG_17305 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 174.1 bits (440), Expect = 5.200e-40
Identity = 93/206 (45.15%), Postives = 126/206 (61.17%), Query Frame = 0
Query:   11 TTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKSARNESEIE-KREMIRQATLARME 216
            T V LNVYDL  AN Y H  G+G +H+GV+IAG+EY++AGGAGIF   PK A GAVFRESI +G    +    R+ LD LR +F    Y+L+  NCN F+N L + L+G PIP+Y+NR+A  GSF SC LP ++T QAPV  +          S       P  +YT+FGG G+ + +G   S   + ++E +RE  R A + R+E
Sbjct:    7 TAVILNVYDLVEANAYTHGLGLGAFHSGVDIAGDEYSFAGGAGIFTCRPKQADGAVFRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLVGVPIPAYVNRMAYLGSFLSCLLPRELTGQAPVEAD----------STPTAANNPRASYTSFGGSGISL-RGTAPSTDTDEDMEVRREKRRLAAMRRIE 201          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: EJK56708.1 (hypothetical protein THAOC_23353 [Thalassiosira oceanica])

HSP 1 Score: 173.3 bits (438), Expect = 8.800e-40
Identity = 97/231 (41.99%), Postives = 128/231 (55.41%), Query Frame = 0
Query:    2 YSGPATGTGTTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKSAR----------------NESEIEKREMIRQATLARMEG 217
            Y G  T  GT+V LNVYDL  AN Y  + G+G++H+GVE+ G EY++A G G+F  SPK APGA FRESI LG+       L  A+  LR +FGPD Y+L++ NCNHFANALV  LLG+ IP ++NRLA +G+  SC +P  +  +APV           Y   Q +      T   F G G  +   P +  R                 ES  ++RE  ++A LARMEG
Sbjct:   97 YEGGRTRMGTSVILNVYDLSPANEYLCSVGLGLHHSGVEVLGREYSFASGGGVFDSSPKEAPGAKFRESIELGHFEGGSAELNAAIGDLREEFGPDRYNLIRRNCNHFANALVWRLLGRTIPGHVNRLADYGNCCSCLIPRKLLEEAPVGPGGGSGNGSSY---QVFSPKKQDTPAVFSGSGHTLG-APSQEGRMSLLGSWRGRASQKKAQESLTDRREKAKRAALARMEG 323          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: XP_008605728.1 (hypothetical protein SDRG_01949 [Saprolegnia diclina VS20] >EQC40884.1 hypothetical protein SDRG_01949 [Saprolegnia diclina VS20])

HSP 1 Score: 172.6 bits (436), Expect = 1.500e-39
Identity = 93/206 (45.15%), Postives = 126/206 (61.17%), Query Frame = 0
Query:   11 TTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKSARNESEIE-KREMIRQATLARME 216
            T V LNVYDL  AN Y H  G+G +H+GV+IAG+EY++AGGAGIF   PK A GAVFRESI +G    +    R+ LD LR +F    Y+L+  NCN F+N L + LLG PIP+Y+NR+A  GSF SC LP ++T QAPV  +          S         P+YT+FGG G+ + +G   +   + ++E +RE  R A + R+E
Sbjct:    7 TAVILNVYDLMDANAYTHGLGLGAFHSGVDIAGDEYSFAGGAGIFTCRPKQADGAVFRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLSCLLPRELTGQAPVEGD----------STPVAATNQRPSYTSFGGSGISL-RGTAPTTDTDEDMEVRREKRRLAAMRRIE 201          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: OQS00610.1 (hypothetical protein ACHHYP_03269 [Achlya hypogyna])

HSP 1 Score: 171.4 bits (433), Expect = 3.400e-39
Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 0
Query:   11 TTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKS----ARNESEIEKREMIRQATLARME 216
            T V LNVYDL  AN Y H  G+G +H+GV++ G+E+++AGGAGIF   PK A GAVFRESI +G    +    RRA++ LR DF  + Y+L+  NCN F+N + + LLG PIPSY+NR+A  GSF SC LP ++T QAPV  +         P    +     P+Y +FGG G+ ++    K+    A +E    +RE  R A + R E
Sbjct:    7 TAVILNVYDLMEANAYMHGLGLGAFHSGVDVGGDEFSFAGGAGIFTCRPKQADGAVFRESIHMGYFDGSSVDARRAIEDLRQDFQGNQYNLLTKNCNTFSNEVCLRLLGIPIPSYVNRIAYLGSFLSCLLPRELTGQAPVEGDT--------PIACNHSSHRAPSYKSFGGSGISLNGSVPKTTPSPATDEDAATRREKRRLAAMKRFE 207          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: OQR96821.1 (hypothetical protein THRCLA_07161 [Thraustotheca clavata])

HSP 1 Score: 169.9 bits (429), Expect = 9.800e-39
Identity = 91/207 (43.96%), Postives = 123/207 (59.42%), Query Frame = 0
Query:   11 TTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPT-PTYTAFGGEGMRMSQGPVKSARNESEIE-KREMIRQATLARME 216
            T V LNVYDL  AN Y H  G G +H+G+++ G+EY++AGGAGIF   PK A GAVFRESI +G    +    RR ++ LR DF    Y+L+  NCN FAN   ++LLG PIPSY+NR+A FGSF SC LP ++   APV             +   Y   P+ P+Y A+GG G+ ++ G   +   E + E +RE  R A + R+E
Sbjct:    7 TAVILNVYDLMEANAYTHALGFGAFHSGLDVGGDEYSFAGGAGIFTCRPKQADGAVFRESIHMGYFDGSSMDARRVIESLRSDFQGSHYNLLTKNCNTFANEACLQLLGIPIPSYINRMAYFGSFLSCLLPKELAGNAPVEGS----------TSLSYSNTPSQPSYQAYGGNGISLN-GTSSATMTEDDAEIRREKRRAAAMKRLE 202          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: CBJ48730.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 168.3 bits (425), Expect = 2.800e-38
Identity = 77/145 (53.10%), Postives = 101/145 (69.66%), Query Frame = 0
Query:    8 GTGTTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQ 153
            G  T V LNVYDL   N + H  G+GV+H+G+E+ G EYT+AGG GIF   P+ APGA FRE++ +G+      +L RA+D LR +FGPD Y+++  NCN F++AL  EL+GKPIP Y+NRLA  GS+FSC +P  M   APVNQ
Sbjct:    6 GIPTEVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHEPRKAPGARFREAVNMGSFTGGSSSLSRAIDSLREEFGPDRYNVLTRNCNSFSSALCEELVGKPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNQ 150          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: XP_008890324.1 (hypothetical protein PPTG_00650 [Phytophthora parasitica INRA-310] >ETI56836.1 hypothetical protein F443_00771 [Phytophthora parasitica P1569] >ETK96614.1 hypothetical protein L915_00717 [Phytophthora parasitica] >ETL49977.1 hypothetical protein L916_00711 [Phytophthora parasitica] >ETM03050.1 hypothetical protein L917_00674 [Phytophthora parasitica] >ETN24237.1 hypothetical protein PPTG_00650 [Phytophthora parasitica INRA-310] >ETO85570.1 hypothetical protein F444_00772 [Phytophthora parasitica P1976] >ETP26618.1 hypothetical protein F441_00759 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 162.5 bits (410), Expect = 1.600e-36
Identity = 94/214 (43.93%), Postives = 118/214 (55.14%), Query Frame = 0
Query:    8 GTGTTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTP-----TYTAFGGEGMRMSQGPVKSARNESE--IEKREMIRQATLARM 215
            G  T V LN+YDL  AN +    G G++H+GVEIAG E++YA GAG+F+ SP+ APGA FRESI +G          R    L PDF  D Y+L   NCN +A+AL   LL KPIP Y+NR A  GSF SC +PAD+T QAPV            PS    +   TP      YT F G G  +      S+ +ES    ++RE +R A L RM
Sbjct:    2 GPRTAVTLNIYDLVEANEFMAPLGFGIFHSGVEIAGEEFSYASGAGVFSSSPRQAPGAKFRESIDMGFFEGTSQEAHRLAYSLSPDFEGDAYNLFTRNCNTYADALCQLLLNKPIPGYVNRAAYLGSFLSCLMPADLTDQAPVGD----------PSTPSRITNGTPRRSDFIYTPFAGSGQTVGSTVDASSSSESSTLADRREKVRLAALRRM 205          
BLAST of NO03G03240 vs. NCBI_GenBank
Match: ETM56297.1 (hypothetical protein L914_00704 [Phytophthora parasitica])

HSP 1 Score: 162.5 bits (410), Expect = 1.600e-36
Identity = 94/214 (43.93%), Postives = 118/214 (55.14%), Query Frame = 0
Query:    8 GTGTTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAGGAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYSLVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPVNQEXXXXXXXXYPSVQRYVGAPTP-----TYTAFGGEGMRMSQGPVKSARNESE--IEKREMIRQATLARM 215
            G  T V LN+YDL  AN +    G G++H+GVEIAG E++YA GAG+F+ SP+ APGA FRESI +G          R    L PDF  D Y+L   NCN +A+AL   LL KPIP Y+NR A  GSF SC +PAD+T QAPV            PS    +   TP      YT F G G  +      S+ +ES    ++RE +R A L RM
Sbjct:    2 GPRTAVTLNIYDLVEANEFMAPLGFGIFHSGVEIAGEEFSYASGAGVFSSSPRQAPGAKFRESIDMGFFEGTSQEAHRLAYSLSPDFEGDAYNLFTRNCNTYADALCQLLLNKPIPGYVNRAAYLGSFLSCLMPADLTDQAPVGD----------PSTPSRITNGTPRRSGFIYTPFAGSGQTVGSTVDASSSSESSTLADRREKVRLAALRRM 205          
The following BLAST results are available for this feature:
BLAST of NO03G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29734.12.200e-7568.22protein of unknown function DUF862, eukaryotic [Na... [more]
XP_012198138.11.000e-4045.63hypothetical protein SPRG_04142 [Saprolegnia paras... [more]
XP_012212031.15.200e-4045.15hypothetical protein SPRG_17305 [Saprolegnia paras... [more]
EJK56708.18.800e-4041.99hypothetical protein THAOC_23353 [Thalassiosira oc... [more]
XP_008605728.11.500e-3945.15hypothetical protein SDRG_01949 [Saprolegnia dicli... [more]
OQS00610.13.400e-3943.54hypothetical protein ACHHYP_03269 [Achlya hypogyna... [more]
OQR96821.19.800e-3943.96hypothetical protein THRCLA_07161 [Thraustotheca c... [more]
CBJ48730.12.800e-3853.10conserved unknown protein [Ectocarpus siliculosus][more]
XP_008890324.11.600e-3643.93hypothetical protein PPTG_00650 [Phytophthora para... [more]
ETM56297.11.600e-3643.93hypothetical protein L914_00704 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005570NSK005570Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03240.1NO03G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572497gene_1518Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g18gene870Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03240.1NO03G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03240 ID=NO03G03240|Name=NO03G03240|organism=Nannochloropsis oceanica|type=gene|length=1264bp
ATGTATTCCGGTCCCGCAACGGGCACTGGAACTACGGTGTACCTAAATGT
CTACGACCTCCACACAGCAAACCGATATGCCCACACTTTCGGGGTTGGCG
TCTATCATACTGgtacgtagggggtagctgggcgcagggagatgggcgtg
gggaggggtgccctggatttatgccttggagcatattgatgtgcgtcctt
gccggcttgatcccggcctaaaggggcctgctagctaaggatcatggcat
cttctcttagctctctgcgttttggctgacctgtgtcgtagctgtcctcc
cgtgctcgtccatctgttgaccccatcccccccatccttccgtttttcct
gccccctcccttgttttccaactcagGCGTGGAGATAGCCGGGAACGAAT
ACACTTATGCAGGTGGCGCTGGTATATTTGCGATGTCCCCAAAGGTGGCG
CCAGGTGCGGTTTTCCGTGAGTCTATACGCCTGGGAAACCTGGTTGACGC
ACCTGGAGCTTTGCGGCGGGCGCTGGACATTCTGAGACCAGACTTCGGGC
CAGACGATTACAGCTTAGTCAAGAACAATTGTAACCATTTTgtacgtatt
cccctcttctatttcggggtccagtaggatcatgtgtagcgtgctgcggg
agatttgcatcactcagtgcacttgcaaatccgccccccctccctccaac
agGCCAACGCCCTCGTCATAGAGCTTTTGGGCAAGCCCATTCCCAGCTAC
CTCAATCGTCTGGCCTCTTTTGGTTCATTTTTCTCCTGCTTCCTTCCCGC
GGATATGACGAGCCAAGCGCCCGTGAATCAAGgtgcgtatcgtctctctc
cctatctctctcccacacacacacctctttttttcactctctttggagga
gctggtctccgtcttcatattttccttggaggcgatgaattcccctccac
tccttactggtcttcccctccgcttctttctgatccccaactacacacac
caacacacagAAGGAGGTGGTGGAGGAGGTGCTGCTTACCCCTCTGTGCA
ACGGTATGTCGGGGCGCCAACACCGACTTATACGGCTTTTGGTGGTGAGG
GCATGAGGATGAGTCAAGGTCCAGTCAAATCAGCGAGGAATGAGAGCGAG
ATTGAAAAGAGGGAGATGATTCGGCAGGCGACGCTTGCGAGGATGGAAGG
AGGAGGAGGTAGAGTAGGAGATGGAGGAAGAGGGACAGGTGCGGGGACGG
CGTCTTTATCGTAG
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protein sequence of NO03G03240.1

>NO03G03240.1-protein ID=NO03G03240.1-protein|Name=NO03G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MYSGPATGTGTTVYLNVYDLHTANRYAHTFGVGVYHTGVEIAGNEYTYAG
GAGIFAMSPKVAPGAVFRESIRLGNLVDAPGALRRALDILRPDFGPDDYS
LVKNNCNHFANALVIELLGKPIPSYLNRLASFGSFFSCFLPADMTSQAPV
NQEGGGGGGAAYPSVQRYVGAPTPTYTAFGGEGMRMSQGPVKSARNESEI
EKREMIRQATLARMEGGGGRVGDGGRGTGAGTASLS*
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Synonyms
Publications