NO03G03200, NO03G03200 (gene) Nannochloropsis oceanica

Overview
NameNO03G03200
Unique NameNO03G03200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2368
Alignment locationchr3:950841..953208 -

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Properties
Property NameValue
DescriptionAtp-dependent protease la
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:950841..953208 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_domain
IPR003111Pept_S16_N
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
BLAST of NO03G03200 vs. NCBI_GenBank
Match: EWM29762.1 (atp-dependent protease la [Nannochloropsis gaditana])

HSP 1 Score: 355.1 bits (910), Expect = 4.000e-94
Identity = 202/363 (55.65%), Postives = 247/363 (68.04%), Query Frame = 0
Query:   42 TRTHDGLRLMQTQSTALTLPAILAEAETAWQ-QQEKGIPTVRVLLLHDELDHPE---VTESNVPILGATAERNQLLDKDMMTGIKEDDDREEVTGAKSEAEFPCLLDDPTTATCISVGVRDVEEIVLFRSHDASFPVLRRKGAALGTTD--VSSSLAEMVTQKQPRVLMLFAEPKFPLAELTSRLESIFDKSHVMAAYARAVLPALRSPRILVLGXXXXXXXXXXXXXXXXXXXXIPHAVGFALFGENALSTEDVGRLACSLFGSSWLGNFSLDERLTRHLFVPSNITLGKQPPCCKYQAVEETHAHDLPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLLNADASVGTLASIT 399
            T     L +++TQS    L  IL EAE AWQ  Q     T ++L LHDEL+  +     ++  P L ATAERNQLLD D+MT  + +  RE     K E  +      P+TATCISV +   +E+VLFR HDASFP LRRKG     +D   +S+L +MV Q+QP++L+L AEP FPLAEL+SRLE IFDKS+V+AAYARAVLPALR PRIL LG                    +P A+G A+FG+  LS +D GRLAC L GSSWLGNFSLD+ LTR LFVP + TLG+QPP  +Y++V +T A DLPLFRL SVLFPGCSL+LK+FEPRYRRMVKQ LERNEPFGL++A  +VGTLASIT
Sbjct:   53 TGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPARE-----KEELSW----KHPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALG-GAETPAPGPEGGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASIT 405          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: WP_053151797.1 (ATP-dependent protease [Pseudomonas sp. Pf153])

HSP 1 Score: 72.4 bits (176), Expect = 5.100e-9
Identity = 48/135 (35.56%), Postives = 75/135 (55.56%), Query Frame = 0
Query:  344 LPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFG---LLNAD---------ASVGTLASITEVYRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDMEELESLRVQARACLA 467
            LPLF L++VLFPGC L L+IFE RY  M+ + +++ E FG   +LN +         A VG  A IT+    ++D G+  I++ G RRF V +SHV  D    L     ++ E++P + +++ ++  V     LA
Sbjct:    3 LPLFPLNTVLFPGCILDLQIFEARYLDMIGRCMKQGEGFGVVCILNGEEVGIAPEGYARVGCEALITDF--SQQDNGLLGIRVQGGRRFIVHSSHVQPDQ---LTVAEVEWLEDEPEQPLQDEDADLVALLKALA 132          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: WP_013061736.1 (ATP-dependent protease [Salinibacter ruber] >CBH24313.1 ATP-dependent protease [Salinibacter ruber M8])

HSP 1 Score: 72.0 bits (175), Expect = 6.700e-9
Identity = 46/113 (40.71%), Postives = 58/113 (51.33%), Query Frame = 0
Query:  344 LPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLLNAD----ASVGTLASITEVYRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDME 453
            LPLF L  VL+PG  L L IFE RYR +    LE   PFG++  D    A VGT A I EV +  +D G S I + G  RF++    V DD      A  A   +ED   D++
Sbjct:    7 LPLFPLSLVLYPGEQLSLHIFEDRYRALTAYCLEHEVPFGIVRTDGESWADVGTTARIEEVVKQYDD-GRSDIVVRGEERFQIDT--VRDDQASYYTADVALIEDEDTTVDLD 116          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: WP_011403957.1 (ATP-dependent protease [Salinibacter ruber] >YP_445329.1 ATP-dependent protease La [Salinibacter ruber DSM 13855] >ABC45128.1 ATP-dependent protease La domain protein [Salinibacter ruber DSM 13855])

HSP 1 Score: 72.0 bits (175), Expect = 6.700e-9
Identity = 46/113 (40.71%), Postives = 58/113 (51.33%), Query Frame = 0
Query:  344 LPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLLNAD----ASVGTLASITEVYRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDME 453
            LPLF L  VL+PG  L L IFE RYR +    LE   PFG++  D    A VGT A I EV +  +D G S I + G  RF++    V DD      A  A   +ED   D++
Sbjct:    7 LPLFPLSLVLYPGEQLTLHIFEDRYRALTAYCLEHEVPFGIVRTDGESWADVGTTARIEEVVKQYDD-GRSDIVVRGEERFQIDT--VRDDQASYYTADVALIEDEDTTVDLD 116          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: OLB43620.1 (hypothetical protein AUH05_05840 [Ktedonobacter sp. 13_2_20CM_53_11] >OLB58096.1 hypothetical protein AUI01_03090 [Ktedonobacter sp. 13_2_20CM_2_56_8] >OLE04722.1 hypothetical protein AUG82_05640 [Ktedonobacter sp. 13_1_20CM_4_53_11])

HSP 1 Score: 72.0 bits (175), Expect = 6.700e-9
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 0
Query:  341 AHDLPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFG----------LLNADASVGTLASITEVYRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFE--EDPVEDME 453
            A +LPLF L+ VLFPG  L L IFEPRYR+M+    E+  PFG          LL     VGT+A I E+ R+E+  G  ++   G +RF + + H        L     + +E  ++P ED+E
Sbjct:    5 ASELPLFPLNVVLFPGVVLPLHIFEPRYRQMIADCQEQTTPFGIVLARPESQPLLEEPYPVGTMAEIRELDRLED--GRYVLMAVGVQRFRILSQHREKPYLSAL----VELYEDVDEPAEDVE 122          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: OFW01111.1 (hypothetical protein A3H94_07530 [Acidobacteria bacterium RIFCSPLOWO2_02_FULL_60_20])

HSP 1 Score: 71.6 bits (174), Expect = 8.800e-9
Identity = 52/122 (42.62%), Postives = 65/122 (53.28%), Query Frame = 0
Query:  344 LPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLL----NADASVGTLASITEVYRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDMEELESLRVQA 462
            LPLF L  VLFP   L L IFE RY+ M+ + LE    FG++       AS G  ASI EV R  ED  + I+ + G RRFE+      D     LR   A+FFE+D  ED+   +S R QA
Sbjct:    6 LPLFPLKVVLFPATELPLHIFEERYKEMIGECLEHRSEFGIVLVLDEGLASTGCTASIAEVLRKFEDGRMDIL-VRGQRRFELVR---IDQGKSYLRG-EAQFFEDDQ-EDLRREDSRRQQA 121          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: WP_012844288.1 (ATP-dependent protease [Rhodothermus marinus] >ACY48677.1 peptidase S16 lon domain protein [Rhodothermus marinus DSM 4252])

HSP 1 Score: 70.9 bits (172), Expect = 1.500e-8
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 0
Query:  344 LPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLLNADAS----VGTLASITEVYRMEEDTGISIIKITGTRRFEV 423
            LPLF L  VL+PG  L L IFEPRYRR+V + LE + PFG++ A+AS    VG+LA IT V     D  + I+ +TG  RF +
Sbjct:    6 LPLFPLEVVLYPGEQLPLHIFEPRYRRLVTRCLEEDRPFGIVLAEASKLAQVGSLARITRVLARYGDGRMDIL-VTGEDRFRI 87          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: WP_024619114.1 (ATP-dependent protease [Pseudomonas fluorescens])

HSP 1 Score: 70.9 bits (172), Expect = 1.500e-8
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 0
Query:  344 LPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLL------------NADASVGTLASITEVYRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDMEELESLRVQARACLA 467
            LPLF L++VLFPGC L L+IFE RY  M+ + +++ E FG++               A VG  A IT+    ++D G+  I++ G RRF V AS V  D    L     ++ EE+P + ++E ++  V     LA
Sbjct:    3 LPLFPLNTVLFPGCILDLQIFEARYLDMIGRCMKKGEGFGVVCILDGEEVGIAPEGYARVGCEARITDF--SQQDNGLLGIRVQGGRRFIVHASAVQADQ---LTVAEVEWLEEEPEQPLQEEDADLVALLKALA 132          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: WP_006048031.1 (MULTISPECIES: ATP-dependent protease [Burkholderiaceae] >EDT11866.1 peptidase S16 lon domain protein [Paraburkholderia graminis C4D1M] >ALE53589.1 ATP-dependent protease [Burkholderia sp. HB1] >PTQ93302.1 hypothetical protein C8K19_11749 [Paraburkholderia sp. GV072] >PUA99948.1 hypothetical protein C8K18_11749 [Paraburkholderia sp. GV068])

HSP 1 Score: 70.9 bits (172), Expect = 1.500e-8
Identity = 50/126 (39.68%), Postives = 66/126 (52.38%), Query Frame = 0
Query:  343 DLPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFG--LLNADA------------SVGTLASITEVYRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDMEEL 455
            D+PLF LH+VLFPG  L LKIFE RY  M +  L    PFG  LL + A            S+G LA I E     E  G+ +I+  GTRRF + +  V  +S GLL        E++P+E  ++L
Sbjct:   10 DVPLFPLHTVLFPGGILPLKIFEARYLDMARDCLREKTPFGVCLLKSGAEVARENEPSVPESIGCLAEIDEC--DVEAFGMLLIRARGTRRFRLLSHRV--ESSGLLVGMAEPLGEDEPLEGNQQL 131          
BLAST of NO03G03200 vs. NCBI_GenBank
Match: WP_025597833.1 (ATP-dependent protease [Burkholderia sp. WSM2230])

HSP 1 Score: 70.5 bits (171), Expect = 2.000e-8
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 0
Query:  343 DLPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFG--LLNADASVG---------TLASITEVYRMEEDT-GISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVEDMEEL 455
            D+PLF LH+VLFP   L LKIFE RY  M +  L    PFG  LL + A V          ++  + E+ + + +T G+ +I+  GTRRF + +  V  +S GLL        E+ P+ED ++L
Sbjct:   10 DVPLFPLHTVLFPDGILPLKIFEARYLDMARDCLREKTPFGVCLLKSGAEVARENEPSVPESIGCLAEIDQCDVETFGMLLIRARGTRRFRLLSHRV--ESSGLLVGMAEPLGEDQPLEDNQQL 131          
The following BLAST results are available for this feature:
BLAST of NO03G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29762.14.000e-9455.65atp-dependent protease la [Nannochloropsis gaditan... [more]
WP_053151797.15.100e-935.56ATP-dependent protease [Pseudomonas sp. Pf153][more]
WP_013061736.16.700e-940.71ATP-dependent protease [Salinibacter ruber] >CBH24... [more]
WP_011403957.16.700e-940.71ATP-dependent protease [Salinibacter ruber] >YP_44... [more]
OLB43620.16.700e-937.10hypothetical protein AUH05_05840 [Ktedonobacter sp... [more]
OFW01111.18.800e-942.62hypothetical protein A3H94_07530 [Acidobacteria ba... [more]
WP_012844288.11.500e-849.40ATP-dependent protease [Rhodothermus marinus] >ACY... [more]
WP_024619114.11.500e-835.56ATP-dependent protease [Pseudomonas fluorescens][more]
WP_006048031.11.500e-839.68MULTISPECIES: ATP-dependent protease [Burkholderia... [more]
WP_025597833.12.000e-837.10ATP-dependent protease [Burkholderia sp. WSM2230][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005574NSK005574Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03200.1NO03G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572482gene_1514Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g22gene874Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03200.1NO03G03200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03200 ID=NO03G03200|Name=NO03G03200|organism=Nannochloropsis oceanica|type=gene|length=2368bp
GGCGTTGCAGTGGCTGAATGACCTAAGGGTTCAAGGGGGTAAGAAAGAGA
AGTGAGGCGTGCCGGAGGACCCTTCTTGATCAGCAAATGTGGGGGAGACT
TGATTGCTGATGAGCACGTTGCTTGCCCTCCTAGGAAAGTTCTGAGGACG
TCGAGCCCCAAGAGAGCCCCACCCTTCATGTATGCCCTGCCCCATCCGCT
TATGGGAGAGTTGGCTTGCCTGCGTATACGAGCCAGAGTGAACGATGTGG
GTGAACTTTTGAACTAAGGGTGGGGATTACGTGTAACTTTTACAAAAGGG
GACAAGAAAGGTGCGGGTCCCGTTCTTTTTCATGCCTCCAGACCGTTCCT
GACCGCCGTGTCGATTGCTTGAGCAGGGGAGGAGGTATCGCTGCTGCCTG
ATCGCGGAACGGTGTTTGGCAACCCGACAACCGCGCAAAGGTTCATTTAT
GACTCACTCACTTCATAATCAAATCCTCCCACTCATCATATCAACAGGTT
CCTCACCATGCTGCACGTTTTCCGTCGCCAACCGCGGTCTTACCTTCCAA
AATCCGTCGTGATACTAAAGCGTCTTAACCCGCCTGACACGAACATCAGT
CGCCCTTTCCTTCGCCATACATCGACCTTGACCCGAACACATGACGGCTT
GAGATTGATGCAGACGCAGTCGACAGCATTAACACTTCCAGCCATCTTGG
CGGAGGCCGAAACAGCGTGGCAACAACAGGAAAAAGGCATCCCGACAGTG
CGTGTGCTTCTCCTGCACGACGAGCTCGACCATCCCGAGGTCACAGAGAG
TAATGTACCAATACTGGGTGCCACGGCCGAGCGCAATCAATTGCTAGATA
AGGACATGATGACGGGAATCAAGGAAGATGACGATAGAGAGGAGGTAACA
GGAGCCAAGAGCGAAGCCGAGTTCCCGTGTCTTCTGGACGACCCCACCAC
TGCCACGTGCATAAGCGTCGGGGTCCGCGATGTCGAAGAAATTGTGCTCT
TCCGCAGCCACGATGCATCCTTCCCCGTACTGCGTCGGAAAGGGGCTGCG
TTAGGCACCACGGATGTGTCCTCATCGTTGGCAGAAATGGTGACGCAGAA
GCAGCCGCGGGTCTTGATGCTCTTCGCTGAGCCGAAATTTCCTCTCGCGG
AATTAACCAGTCGCTTGGAGTCTATTTTTGACAAAAGCCACGTCATGGCC
GCCTACGCCCGTGCGGTTCTTCCAGCACTTCGATCCCCGCGAATTTTGGT
ATTGGGTGGAGGGGAGACGCCTGCGCCGACTGACGATACAAGTAGTAGCA
GCAGTAGTAGCAGCACCATCCCTCATGCTGTCGGGTTCGCTTTATTCGGT
GAGAATGCCTTAAGTACGGAGGATGTGGGCCGACTAGCTTGCAGTTTGTT
TGGATCGTCCTGGCTTGGCAATTTTTCTTTGGATGAACGGTTAACCCGTC
ATTTGTTCGTCCCCTCCAATATCACGTTGGGGAAGCAACCGCCTTGCTGT
AAATATCAGGCGGTGGAGGAAACACACGCTCACGATTTGCCTTTGTTTCG
GTTGCATTCTGTGTTGTTTCCGGGATGTTCTCTGATGCTGAAGATTTTCG
AACCGAGGTATCGCCGGATGGTGAAGCAAGCGTTGGAGCGGAATGAGCCG
TTTGGACTTTTGAACGCGGATGCGAGTGTGGGGACGTTGGCTAGCATAAC
Ggtacgtacattcacttttccactcaatccatgttttagcggtggaaact
atcacccctgatttcttcgctctctcgctccctactttttccctcgcccc
taacagGAGGTGTACCGCATGGAGGAAGACACCGGCATCAGCATCATCAA
GATCACAGGCACCCGCCGCTTTGAAGTTCAGGCAAGCCACGTGGCCGACG
ACAGCTTCGGGCTTTTGCGCGCCACAACTGCCAAGTTCTTTGAAGAGGAC
CCCGTGGAGGACATGGAGGAGCTAGAGTCCCTGCGAGTGCAAGCCCGGGC
ATGTCTAGCGAGCTCTCTGGCAGCGGCCTCGGCGTCGGCAATGGGTCCAC
CGCCACCGTCGTTTTTGATGCAGGTAGGACAGCAGCAAGAGGGGAGCGCG
GGAGGGAAGGAGGCGGCGATACTTGCGGAGGAGTCGTTTGTGTTAAGTCA
GTGGTTGGTAGATTCATATCAGAAAGTGTTGCCGGAACGGAAGAAGATGG
AATGGCTAAGGACGACAAGCACCGCCACGAGAATGAGGGATTGTCTGGAT
TTGTTGTTGAGTGTCGTCAGGCGAGGGATGGGTGAAAGAGGTGAAGGAGG
TGGGGGCAGAAAAGGCGGAGGAGCCGCTTTGTGAAATTTAAATAATCAAA
TAAGTGTCAGATGATCTG
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protein sequence of NO03G03200.1

>NO03G03200.1-protein ID=NO03G03200.1-protein|Name=NO03G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MLHVFRRQPRSYLPKSVVILKRLNPPDTNISRPFLRHTSTLTRTHDGLRL
MQTQSTALTLPAILAEAETAWQQQEKGIPTVRVLLLHDELDHPEVTESNV
PILGATAERNQLLDKDMMTGIKEDDDREEVTGAKSEAEFPCLLDDPTTAT
CISVGVRDVEEIVLFRSHDASFPVLRRKGAALGTTDVSSSLAEMVTQKQP
RVLMLFAEPKFPLAELTSRLESIFDKSHVMAAYARAVLPALRSPRILVLG
GGETPAPTDDTSSSSSSSSTIPHAVGFALFGENALSTEDVGRLACSLFGS
SWLGNFSLDERLTRHLFVPSNITLGKQPPCCKYQAVEETHAHDLPLFRLH
SVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLLNADASVGTLASITEV
YRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVED
MEELESLRVQARACLASSLAAASASAMGPPPPSFLMQVGQQQEGSAGGKE
AAILAEESFVLSQWLVDSYQKVLPERKKMEWLRTTSTATRMRDCLDLLLS
VVRRGMGERGEGGGGRKGGGAAL*
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Synonyms
Publications