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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:950841..953208 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G03200.1 vs.
Match: EWM29762.1 (atp-dependent protease la [Nannochloropsis gaditana]) HSP 1 Score: 374.8 bits (961), Expect = 4.800e-100 Identity = 209/363 (57.58%), Postives = 257/363 (70.80%), Query Frame = 0
Query: 42 TRTHDGLRLMQTQSTALTLPAILAEAETAWQQ-QEKGIPTVRVLLLHDELDHPEVT---ESNVPILGATAERNQLLDKDMMTGIKEDDDREEVTGAKSEAEFPCLLDDPTTATCISVGVRDVEEIVLFRSHDASFPVLRRKGAALGTTDVS--SSLAEMVTQKQPRVLMLFAEPKFPLAELTSRLESIFDKSHVMAAYARAVLPALRSPRILVLGGGETPAPTDDTSSSSSSSSTIPHAVGFALFGENALSTEDVGRLACSLFGSSWLGNFSLDERLTRHLFVPSNITLGKQPPCCKYQAVEETHAHDLPLFRLHSVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLLNADASVGTLASIT 399
T L +++TQS L IL EAE AWQ Q T ++L LHDEL+ + ++ P L ATAERNQLLD D+MT + + RE K E + P+TATCISV + +E+VLFR HDASFP LRRKG +D + S+L +MV Q+QP++L+L AEP FPLAEL+SRLE IFDKS+V+AAYARAVLPALR PRIL LGG ETPAP + + +T+P A+G A+FG+ LS +D GRLAC L GSSWLGNFSLD+ LTR LFVP + TLG+QPP +Y++V +T A DLPLFRL SVLFPGCSL+LK+FEPRYRRMVKQ LERNEPFGL++A +VGTLASIT
Sbjct: 53 TGADTALSIVRTQSGNRKLSEILNEAEKAWQDSQYPSKITFQLLHLHDELEDQDTDGAIQATAPTLIATAERNQLLDTDLMTTERGNPARE-----KEELSWK----HPSTATCISVALPHAQEVVLFRCHDASFPQLRRKGVQGAGSDGADASALQDMVLQRQPQLLLLIAEPNFPLAELSSRLECIFDKSYVLAAYARAVLPALRPPRILALGGAETPAPGPE-GGAEGGDATVPRALGLAVFGDQTLSADDAGRLACCLLGSSWLGNFSLDQALTRQLFVPRHWTLGRQPPTHRYRSVSDTQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPFGLVHARDTVGTLASIT 405
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G03200.1 ID=NO03G03200.1|Name=NO03G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2263bp
GGCGTTGCAGTGGCTGAATGACCTAAGGGTTCAAGGGGGTAAGAAAGAGA
AGTGAGGCGTGCCGGAGGACCCTTCTTGATCAGCAAATGTGGGGGAGACT
TGATTGCTGATGAGCACGTTGCTTGCCCTCCTAGGAAAGTTCTGAGGACG
TCGAGCCCCAAGAGAGCCCCACCCTTCATGTATGCCCTGCCCCATCCGCT
TATGGGAGAGTTGGCTTGCCTGCGTATACGAGCCAGAGTGAACGATGTGG
GTGAACTTTTGAACTAAGGGTGGGGATTACGTGTAACTTTTACAAAAGGG
GACAAGAAAGGTGCGGGTCCCGTTCTTTTTCATGCCTCCAGACCGTTCCT
GACCGCCGTGTCGATTGCTTGAGCAGGGGAGGAGGTATCGCTGCTGCCTG
ATCGCGGAACGGTGTTTGGCAACCCGACAACCGCGCAAAGGTTCATTTAT
GACTCACTCACTTCATAATCAAATCCTCCCACTCATCATATCAACAGGTT
CCTCACCATGCTGCACGTTTTCCGTCGCCAACCGCGGTCTTACCTTCCAA
AATCCGTCGTGATACTAAAGCGTCTTAACCCGCCTGACACGAACATCAGT
CGCCCTTTCCTTCGCCATACATCGACCTTGACCCGAACACATGACGGCTT
GAGATTGATGCAGACGCAGTCGACAGCATTAACACTTCCAGCCATCTTGG
CGGAGGCCGAAACAGCGTGGCAACAACAGGAAAAAGGCATCCCGACAGTG
CGTGTGCTTCTCCTGCACGACGAGCTCGACCATCCCGAGGTCACAGAGAG
TAATGTACCAATACTGGGTGCCACGGCCGAGCGCAATCAATTGCTAGATA
AGGACATGATGACGGGAATCAAGGAAGATGACGATAGAGAGGAGGTAACA
GGAGCCAAGAGCGAAGCCGAGTTCCCGTGTCTTCTGGACGACCCCACCAC
TGCCACGTGCATAAGCGTCGGGGTCCGCGATGTCGAAGAAATTGTGCTCT
TCCGCAGCCACGATGCATCCTTCCCCGTACTGCGTCGGAAAGGGGCTGCG
TTAGGCACCACGGATGTGTCCTCATCGTTGGCAGAAATGGTGACGCAGAA
GCAGCCGCGGGTCTTGATGCTCTTCGCTGAGCCGAAATTTCCTCTCGCGG
AATTAACCAGTCGCTTGGAGTCTATTTTTGACAAAAGCCACGTCATGGCC
GCCTACGCCCGTGCGGTTCTTCCAGCACTTCGATCCCCGCGAATTTTGGT
ATTGGGTGGAGGGGAGACGCCTGCGCCGACTGACGATACAAGTAGTAGCA
GCAGTAGTAGCAGCACCATCCCTCATGCTGTCGGGTTCGCTTTATTCGGT
GAGAATGCCTTAAGTACGGAGGATGTGGGCCGACTAGCTTGCAGTTTGTT
TGGATCGTCCTGGCTTGGCAATTTTTCTTTGGATGAACGGTTAACCCGTC
ATTTGTTCGTCCCCTCCAATATCACGTTGGGGAAGCAACCGCCTTGCTGT
AAATATCAGGCGGTGGAGGAAACACACGCTCACGATTTGCCTTTGTTTCG
GTTGCATTCTGTGTTGTTTCCGGGATGTTCTCTGATGCTGAAGATTTTCG
AACCGAGGTATCGCCGGATGGTGAAGCAAGCGTTGGAGCGGAATGAGCCG
TTTGGACTTTTGAACGCGGATGCGAGTGTGGGGACGTTGGCTAGCATAAC
GGAGGTGTACCGCATGGAGGAAGACACCGGCATCAGCATCATCAAGATCA
CAGGCACCCGCCGCTTTGAAGTTCAGGCAAGCCACGTGGCCGACGACAGC
TTCGGGCTTTTGCGCGCCACAACTGCCAAGTTCTTTGAAGAGGACCCCGT
GGAGGACATGGAGGAGCTAGAGTCCCTGCGAGTGCAAGCCCGGGCATGTC
TAGCGAGCTCTCTGGCAGCGGCCTCGGCGTCGGCAATGGGTCCACCGCCA
CCGTCGTTTTTGATGCAGGTAGGACAGCAGCAAGAGGGGAGCGCGGGAGG
GAAGGAGGCGGCGATACTTGCGGAGGAGTCGTTTGTGTTAAGTCAGTGGT
TGGTAGATTCATATCAGAAAGTGTTGCCGGAACGGAAGAAGATGGAATGG
CTAAGGACGACAAGCACCGCCACGAGAATGAGGGATTGTCTGGATTTGTT
GTTGAGTGTCGTCAGGCGAGGGATGGGTGAAAGAGGTGAAGGAGGTGGGG
GCAGAAAAGGCGGAGGAGCCGCTTTGTGAAATTTAAATAATCAAATAAGT
GTCAGATGATCTG back to topprotein sequence of NO03G03200.1 >NO03G03200.1-protein ID=NO03G03200.1-protein|Name=NO03G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MLHVFRRQPRSYLPKSVVILKRLNPPDTNISRPFLRHTSTLTRTHDGLRL
MQTQSTALTLPAILAEAETAWQQQEKGIPTVRVLLLHDELDHPEVTESNV
PILGATAERNQLLDKDMMTGIKEDDDREEVTGAKSEAEFPCLLDDPTTAT
CISVGVRDVEEIVLFRSHDASFPVLRRKGAALGTTDVSSSLAEMVTQKQP
RVLMLFAEPKFPLAELTSRLESIFDKSHVMAAYARAVLPALRSPRILVLG
GGETPAPTDDTSSSSSSSSTIPHAVGFALFGENALSTEDVGRLACSLFGS
SWLGNFSLDERLTRHLFVPSNITLGKQPPCCKYQAVEETHAHDLPLFRLH
SVLFPGCSLMLKIFEPRYRRMVKQALERNEPFGLLNADASVGTLASITEV
YRMEEDTGISIIKITGTRRFEVQASHVADDSFGLLRATTAKFFEEDPVED
MEELESLRVQARACLASSLAAASASAMGPPPPSFLMQVGQQQEGSAGGKE
AAILAEESFVLSQWLVDSYQKVLPERKKMEWLRTTSTATRMRDCLDLLLS
VVRRGMGERGEGGGGRKGGGAAL* back to topmRNA from alignment at chr3:950841..953208- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G03200.1 ID=NO03G03200.1|Name=NO03G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2368bp|location=Sequence derived from alignment at chr3:950841..953208- (Nannochloropsis oceanica)
GGCGTTGCAGTGGCTGAATGACCTAAGGGTTCAAGGGGGTAAGAAAGAGA
AGTGAGGCGTGCCGGAGGACCCTTCTTGATCAGCAAATGTGGGGGAGACT
TGATTGCTGATGAGCACGTTGCTTGCCCTCCTAGGAAAGTTCTGAGGACG
TCGAGCCCCAAGAGAGCCCCACCCTTCATGTATGCCCTGCCCCATCCGCT
TATGGGAGAGTTGGCTTGCCTGCGTATACGAGCCAGAGTGAACGATGTGG
GTGAACTTTTGAACTAAGGGTGGGGATTACGTGTAACTTTTACAAAAGGG
GACAAGAAAGGTGCGGGTCCCGTTCTTTTTCATGCCTCCAGACCGTTCCT
GACCGCCGTGTCGATTGCTTGAGCAGGGGAGGAGGTATCGCTGCTGCCTG
ATCGCGGAACGGTGTTTGGCAACCCGACAACCGCGCAAAGGTTCATTTAT
GACTCACTCACTTCATAATCAAATCCTCCCACTCATCATATCAACAGGTT
CCTCACCATGCTGCACGTTTTCCGTCGCCAACCGCGGTCTTACCTTCCAA
AATCCGTCGTGATACTAAAGCGTCTTAACCCGCCTGACACGAACATCAGT
CGCCCTTTCCTTCGCCATACATCGACCTTGACCCGAACACATGACGGCTT
GAGATTGATGCAGACGCAGTCGACAGCATTAACACTTCCAGCCATCTTGG
CGGAGGCCGAAACAGCGTGGCAACAACAGGAAAAAGGCATCCCGACAGTG
CGTGTGCTTCTCCTGCACGACGAGCTCGACCATCCCGAGGTCACAGAGAG
TAATGTACCAATACTGGGTGCCACGGCCGAGCGCAATCAATTGCTAGATA
AGGACATGATGACGGGAATCAAGGAAGATGACGATAGAGAGGAGGTAACA
GGAGCCAAGAGCGAAGCCGAGTTCCCGTGTCTTCTGGACGACCCCACCAC
TGCCACGTGCATAAGCGTCGGGGTCCGCGATGTCGAAGAAATTGTGCTCT
TCCGCAGCCACGATGCATCCTTCCCCGTACTGCGTCGGAAAGGGGCTGCG
TTAGGCACCACGGATGTGTCCTCATCGTTGGCAGAAATGGTGACGCAGAA
GCAGCCGCGGGTCTTGATGCTCTTCGCTGAGCCGAAATTTCCTCTCGCGG
AATTAACCAGTCGCTTGGAGTCTATTTTTGACAAAAGCCACGTCATGGCC
GCCTACGCCCGTGCGGTTCTTCCAGCACTTCGATCCCCGCGAATTTTGGT
ATTGGGTGGAGGGGAGACGCCTGCGCCGACTGACGATACAAGTAGTAGCA
GCAGTAGTAGCAGCACCATCCCTCATGCTGTCGGGTTCGCTTTATTCGGT
GAGAATGCCTTAAGTACGGAGGATGTGGGCCGACTAGCTTGCAGTTTGTT
TGGATCGTCCTGGCTTGGCAATTTTTCTTTGGATGAACGGTTAACCCGTC
ATTTGTTCGTCCCCTCCAATATCACGTTGGGGAAGCAACCGCCTTGCTGT
AAATATCAGGCGGTGGAGGAAACACACGCTCACGATTTGCCTTTGTTTCG
GTTGCATTCTGTGTTGTTTCCGGGATGTTCTCTGATGCTGAAGATTTTCG
AACCGAGGTATCGCCGGATGGTGAAGCAAGCGTTGGAGCGGAATGAGCCG
TTTGGACTTTTGAACGCGGATGCGAGTGTGGGGACGTTGGCTAGCATAAC
GGTACGTACATTCACTTTTCCACTCAATCCATGTTTTAGCGGTGGAAACT
ATCACCCCTGATTTCTTCGCTCTCTCGCTCCCTACTTTTTCCCTCGCCCC
TAACAGGAGGTGTACCGCATGGAGGAAGACACCGGCATCAGCATCATCAA
GATCACAGGCACCCGCCGCTTTGAAGTTCAGGCAAGCCACGTGGCCGACG
ACAGCTTCGGGCTTTTGCGCGCCACAACTGCCAAGTTCTTTGAAGAGGAC
CCCGTGGAGGACATGGAGGAGCTAGAGTCCCTGCGAGTGCAAGCCCGGGC
ATGTCTAGCGAGCTCTCTGGCAGCGGCCTCGGCGTCGGCAATGGGTCCAC
CGCCACCGTCGTTTTTGATGCAGGTAGGACAGCAGCAAGAGGGGAGCGCG
GGAGGGAAGGAGGCGGCGATACTTGCGGAGGAGTCGTTTGTGTTAAGTCA
GTGGTTGGTAGATTCATATCAGAAAGTGTTGCCGGAACGGAAGAAGATGG
AATGGCTAAGGACGACAAGCACCGCCACGAGAATGAGGGATTGTCTGGAT
TTGTTGTTGAGTGTCGTCAGGCGAGGGATGGGTGAAAGAGGTGAAGGAGG
TGGGGGCAGAAAAGGCGGAGGAGCCGCTTTGTGAAATTTAAATAATCAAA
TAAGTGTCAGATGATCTG back to topCoding sequence (CDS) from alignment at chr3:950841..953208- >NO03G03200.1 ID=NO03G03200.1|Name=NO03G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at chr3:950841..953208- (Nannochloropsis oceanica)
ATGCTGCACGTTTTCCGTCGCCAACCGCGGTCTTACCTTCCAAAATCCGT
CGTGATACTAAAGCGTCTTAACCCGCCTGACACGAACATCAGTCGCCCTT
TCCTTCGCCATACATCGACCTTGACCCGAACACATGACGGCTTGAGATTG
ATGCAGACGCAGTCGACAGCATTAACACTTCCAGCCATCTTGGCGGAGGC
CGAAACAGCGTGGCAACAACAGGAAAAAGGCATCCCGACAGTGCGTGTGC
TTCTCCTGCACGACGAGCTCGACCATCCCGAGGTCACAGAGAGTAATGTA
CCAATACTGGGTGCCACGGCCGAGCGCAATCAATTGCTAGATAAGGACAT
GATGACGGGAATCAAGGAAGATGACGATAGAGAGGAGGTAACAGGAGCCA
AGAGCGAAGCCGAGTTCCCGTGTCTTCTGGACGACCCCACCACTGCCACG
TGCATAAGCGTCGGGGTCCGCGATGTCGAAGAAATTGTGCTCTTCCGCAG
CCACGATGCATCCTTCCCCGTACTGCGTCGGAAAGGGGCTGCGTTAGGCA
CCACGGATGTGTCCTCATCGTTGGCAGAAATGGTGACGCAGAAGCAGCCG
CGGGTCTTGATGCTCTTCGCTGAGCCGAAATTTCCTCTCGCGGAATTAAC
CAGTCGCTTGGAGTCTATTTTTGACAAAAGCCACGTCATGGCCGCCTACG
CCCGTGCGGTTCTTCCAGCACTTCGATCCCCGCGAATTTTGGTATTGGGT
GGAGGGGAGACGCCTGCGCCGACTGACGATACAAGTAGTAGCAGCAGTAG
TAGCAGCACCATCCCTCATGCTGTCGGGTTCGCTTTATTCGGTGAGAATG
CCTTAAGTACGGAGGATGTGGGCCGACTAGCTTGCAGTTTGTTTGGATCG
TCCTGGCTTGGCAATTTTTCTTTGGATGAACGGTTAACCCGTCATTTGTT
CGTCCCCTCCAATATCACGTTGGGGAAGCAACCGCCTTGCTGTAAATATC
AGGCGGTGGAGGAAACACACGCTCACGATTTGCCTTTGTTTCGGTTGCAT
TCTGTGTTGTTTCCGGGATGTTCTCTGATGCTGAAGATTTTCGAACCGAG
GTATCGCCGGATGGTGAAGCAAGCGTTGGAGCGGAATGAGCCGTTTGGAC
TTTTGAACGCGGATGCGAGTGTGGGGACGTTGGCTAGCATAACGGAGGTG
TACCGCATGGAGGAAGACACCGGCATCAGCATCATCAAGATCACAGGCAC
CCGCCGCTTTGAAGTTCAGGCAAGCCACGTGGCCGACGACAGCTTCGGGC
TTTTGCGCGCCACAACTGCCAAGTTCTTTGAAGAGGACCCCGTGGAGGAC
ATGGAGGAGCTAGAGTCCCTGCGAGTGCAAGCCCGGGCATGTCTAGCGAG
CTCTCTGGCAGCGGCCTCGGCGTCGGCAATGGGTCCACCGCCACCGTCGT
TTTTGATGCAGGTAGGACAGCAGCAAGAGGGGAGCGCGGGAGGGAAGGAG
GCGGCGATACTTGCGGAGGAGTCGTTTGTGTTAAGTCAGTGGTTGGTAGA
TTCATATCAGAAAGTGTTGCCGGAACGGAAGAAGATGGAATGGCTAAGGA
CGACAAGCACCGCCACGAGAATGAGGGATTGTCTGGATTTGTTGTTGAGT
GTCGTCAGGCGAGGGATGGGTGAAAGAGGTGAAGGAGGTGGGGGCAGAAA
AGGCGGAGGAGCCGCTTTGTGA back to top
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