NO03G03190, NO03G03190 (gene) Nannochloropsis oceanica

Overview
NameNO03G03190
Unique NameNO03G03190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2598
Alignment locationchr3:948243..950840 +

Link to JBrowse

Properties
Property NameValue
DescriptionRiboflavin kinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:948243..950840 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009231riboflavin biosynthetic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0008531riboflavin kinase activity
GO:0016301kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR023465Riboflavin_kinase_domain
IPR023468Riboflavin_kinase
IPR015865Riboflavin_kinase_bac/euk
Homology
BLAST of NO03G03190 vs. NCBI_GenBank
Match: EWM29736.1 (riboflavin kinase [Nannochloropsis gaditana])

HSP 1 Score: 228.8 bits (582), Expect = 1.400e-56
Identity = 106/141 (75.18%), Postives = 119/141 (84.40%), Query Frame = 0
Query:   36 LPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNNLGW 177
            LP LL A+VVKGFGRGSKLLGIPTANL+M+QVG +VD WPNGIY+GF  L+  +YKAVASIGTNPYFKNSQKTVEPHLL+EFPDDFYGEELKFLVCGYVRPE SF SL+ELV AIR+DI  AR ALE P+W+   +    W
Sbjct:   97 LPFLLKASVVKGFGRGSKLLGIPTANLNMDQVGPVVDSWPNGIYYGFSCLKGDVYKAVASIGTNPYFKNSQKTVEPHLLHEFPDDFYGEELKFLVCGYVRPERSFASLEELVAAIRSDIEVARTALEAPDWRMLGTREAAW 237          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_012229444.1 (PREDICTED: riboflavin kinase [Linepithema humile])

HSP 1 Score: 162.2 bits (409), Expect = 1.600e-36
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 0
Query:   36 LPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNNLGWTK 179
            LP  ++ TV++GFGRGSK LGIPTANL    V A+     NGIY+G+  LR +++K VASIG NPY+KN +K++E H+L++F +DFYGEELK ++ GY+RPE  F SL+EL+K I+NDIA     LEEP   K  +++   TK
Sbjct:    6 LPYFVSGTVIRGFGRGSKALGIPTANLPEPVVNALSKDLDNGIYYGWASLRGEVHKMVASIGWNPYYKNEKKSMEVHILHKFQNDFYGEELKVIIAGYIRPERDFSSLEELIKEIKNDIAITEQQLEEPVANKLKNDDFLTTK 148          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_011140404.1 (PREDICTED: riboflavin kinase [Harpegnathos saltator] >EFN83892.1 Riboflavin kinase [Harpegnathos saltator])

HSP 1 Score: 159.5 bits (402), Expect = 1.000e-35
Identity = 75/138 (54.35%), Postives = 94/138 (68.12%), Query Frame = 0
Query:   36 LPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNN 174
            LP     T+VKGFGRGSK LGIPTAN     V  + D    GIY+G+  L+ QIYK VASIG NPY+KN +K+VE HLL++F DD YGEELK ++ GY+RPE  F S +EL+K I+NDIA A   L+EP   K   ++
Sbjct:    6 LPYFAAGTIVKGFGRGSKALGIPTANFSESVVNTLPDDLNTGIYYGWASLQKQIYKMVASIGWNPYYKNEKKSVEVHLLHKFQDDLYGEELKVIIAGYIRPEKDFSSEEELIKEIKNDIAIAEKRLDEPVTNKLKDHD 143          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: OWZ09195.1 (Riboflavin kinase [Phytophthora megakarya])

HSP 1 Score: 159.5 bits (402), Expect = 1.000e-35
Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 0
Query:   31 LQALDLPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQ-IYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNNL 175
            ++ L   L L ATVV+GFGRG K LG PTANL  E +G +++  P GIY G+  +  +  YKAVASIG NPYFKN +KTVEPHLL++F  DFYG +LKFLV GY+RPE +F SL+ L+KAI++DI+ +   L+ PE K +S + L
Sbjct:    3 IEQLKTVLRLQATVVEGFGRGGKQLGCPTANLSSEDLGDLLEQLPTGIYCGWATVDGKGPYKAVASIGWNPYFKNKEKTVEPHLLHKFDKDFYGAQLKFLVTGYIRPEMNFSSLESLIKAIQDDISQSEVWLDTPEGKSWSQDAL 147          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_008898052.1 (hypothetical protein PPTG_06054 [Phytophthora parasitica INRA-310] >ETI32402.1 hypothetical protein F443_20770 [Phytophthora parasitica P1569] >ETK72771.1 hypothetical protein L915_20191 [Phytophthora parasitica] >ETL26237.1 hypothetical protein L916_20057 [Phytophthora parasitica] >ETL79438.1 hypothetical protein L917_19919 [Phytophthora parasitica] >ETM32687.1 hypothetical protein L914_19952 [Phytophthora parasitica] >ETN16977.1 hypothetical protein PPTG_06054 [Phytophthora parasitica INRA-310] >ETO61134.1 hypothetical protein F444_20788 [Phytophthora parasitica P1976] >ETP01658.1 hypothetical protein F441_21154 [Phytophthora parasitica CJ01A1] >ETP30421.1 hypothetical protein F442_20570 [Phytophthora parasitica P10297] >KUF86792.1 Riboflavin kinase [Phytophthora nicotianae])

HSP 1 Score: 159.1 bits (401), Expect = 1.300e-35
Identity = 79/145 (54.48%), Postives = 104/145 (71.72%), Query Frame = 0
Query:   31 LQALDLPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQ-IYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNNL 175
            ++ L   L L ATVV+GFGRG K LG PTANL  E +G +++  P GIY G+  +  +  YKAVASIG NPYFKN +KTVEPHLL++F  DFYG +LKFL+ GY+RPE +F SL+ L+KAI++DIA +   L+ PE K +S + L
Sbjct:    3 IEQLKTVLRLQATVVEGFGRGGKQLGCPTANLSSEDLGDLLELLPTGIYCGWATVDGKGPYKAVASIGWNPYFKNKEKTVEPHLLHKFDKDFYGAQLKFLITGYIRPEMNFSSLESLIKAIQDDIAQSDEWLDTPEGKSWSQDAL 147          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_011694255.1 (PREDICTED: riboflavin kinase isoform X1 [Wasmannia auropunctata])

HSP 1 Score: 159.1 bits (401), Expect = 1.300e-35
Identity = 73/137 (53.28%), Postives = 97/137 (70.80%), Query Frame = 0
Query:   37 PLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNN 174
            P  ++  +VKGFGRGSK LGIPTANL    V ++      GIY+G+  L  ++YK VASIG NPY+KN +K++E HLL++F DDFYGEELK ++ GY+RPE  F SLDEL+  I+NDIA A + LEEP   K  +++
Sbjct:    8 PYFVSGVIVKGFGRGSKALGIPTANLSESVVNSLPKNLSTGIYYGWAALNGEVYKMVASIGWNPYYKNEKKSLEVHLLHKFEDDFYGEELKVIIGGYIRPEKDFSSLDELITEIKNDIAIAESQLEEPVINKLKNDD 144          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_011166636.1 (PREDICTED: riboflavin kinase [Solenopsis invicta] >EFZ13679.1 hypothetical protein SINV_10326, partial [Solenopsis invicta])

HSP 1 Score: 158.3 bits (399), Expect = 2.300e-35
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 0
Query:   36 LPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNN 174
            LP  ++  ++KGFGRGS+ LGIPTANL    V A+      GIY+G+  L   +YK VASIG NPY+KN +K++E HLL++F DDFYGEELK ++ GY+RPE  F SLDELV  I+NDIA A   LEEP   K  +++
Sbjct:    6 LPFFVSGIIIKGFGRGSRALGIPTANLSEPVVSALPKDLNTGIYYGWASLHGTVYKMVASIGWNPYYKNEKKSMEVHLLHKFQDDFYGEELKVIISGYIRPERDFSSLDELVTEIKNDIAIAERQLEEPVVNKLKNDD 143          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_011634848.1 (PREDICTED: riboflavin kinase [Pogonomyrmex barbatus])

HSP 1 Score: 158.3 bits (399), Expect = 2.300e-35
Identity = 73/138 (52.90%), Postives = 97/138 (70.29%), Query Frame = 0
Query:   36 LPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNN 174
            LP  ++  VVKGFGRGSK LGIPTAN     V A+      G+Y+G+  L  Q+YK VASIG NPY+KN +K++E HLL++F +DFYG+ELK ++ GY+RPE  F SLD+L+K I+NDIA A   LEEP   K  +++
Sbjct:    6 LPYFVSGVVVKGFGRGSKALGIPTANFPESVVNALPKDLSTGVYYGWASLHGQVYKMVASIGWNPYYKNEKKSMEVHLLHKFQNDFYGDELKVIIVGYIRPERDFSSLDKLIKEIKNDIAIAEHQLEEPVLNKLKNHD 143          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_011882808.1 (PREDICTED: riboflavin kinase [Vollenhovia emeryi])

HSP 1 Score: 158.3 bits (399), Expect = 2.300e-35
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0
Query:   36 LPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNN 174
            LP  ++  +VKGFGRGS+ LGIPTANL    V A+      GIY+G+  L  ++YK VASIG NPY+KN  K++E HLL+EF DDFYGEELK ++ GY+RPE  F SLDEL+  I+NDI  A   LEEP   K  +++
Sbjct:    6 LPCFVSGVIVKGFGRGSRTLGIPTANLPQTVVDALPKDLSTGIYYGWASLHGEVYKMVASIGWNPYYKNKTKSMEVHLLHEFEDDFYGEELKVIISGYIRPEKDFSSLDELIVEIKNDIVVAERQLEEPVVNKLKNDD 143          
BLAST of NO03G03190 vs. NCBI_GenBank
Match: XP_009520825.1 (hypothetical protein PHYSODRAFT_257792 [Phytophthora sojae] >EGZ25537.1 hypothetical protein PHYSODRAFT_257792 [Phytophthora sojae])

HSP 1 Score: 156.0 bits (393), Expect = 1.100e-34
Identity = 77/145 (53.10%), Postives = 105/145 (72.41%), Query Frame = 0
Query:   31 LQALDLPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQ-IYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNNL 175
            ++ L+  L L ATVV+GFGRG K LG PTANL  + +G +++  P+GIY G+  +  +  YKAVASIG NPYFKN +KTVEPHLL++F  DFYG +LKFL+ GY+RPE +F SL+ L+KAI++DIA +   L+  E K +S + L
Sbjct:    3 IKQLETVLRLQATVVEGFGRGGKQLGCPTANLSSKDLGDLLEQLPSGIYCGWATVDGKGPYKAVASIGWNPYFKNKEKTVEPHLLHKFEKDFYGAQLKFLISGYIRPEMNFSSLEALIKAIQDDIAQSEEWLDTTEGKSWSQDAL 147          
The following BLAST results are available for this feature:
BLAST of NO03G03190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29736.11.400e-5675.18riboflavin kinase [Nannochloropsis gaditana][more]
XP_012229444.11.600e-3652.45PREDICTED: riboflavin kinase [Linepithema humile][more]
XP_011140404.11.000e-3554.35PREDICTED: riboflavin kinase [Harpegnathos saltato... [more]
OWZ09195.11.000e-3554.48Riboflavin kinase [Phytophthora megakarya][more]
XP_008898052.11.300e-3554.48hypothetical protein PPTG_06054 [Phytophthora para... [more]
XP_011694255.11.300e-3553.28PREDICTED: riboflavin kinase isoform X1 [Wasmannia... [more]
XP_011166636.12.300e-3553.62PREDICTED: riboflavin kinase [Solenopsis invicta] ... [more]
XP_011634848.12.300e-3552.90PREDICTED: riboflavin kinase [Pogonomyrmex barbatu... [more]
XP_011882808.12.300e-3553.62PREDICTED: riboflavin kinase [Vollenhovia emeryi][more]
XP_009520825.11.100e-3453.10hypothetical protein PHYSODRAFT_257792 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03190.1NO03G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572481gene_1513Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03190.1NO03G03190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03190 ID=NO03G03190|Name=NO03G03190|organism=Nannochloropsis oceanica|type=gene|length=2598bp
CTTGATTGTCACGCGTAACATTTCGTATGTATTTCATGAATGAATGTGTG
AAAAAGAATTTGTTCTTTTTGTTATATTCTTCCTCTTCCCTTGCTTTACT
CTTCTACCTCTGCAATCCGTCTAGATGACTTTATTTTTGATCCTTCAATG
TCTCGGCATGTGTTTCGCCTCCTTTACTATCCATCCCACCACCTCTCCCT
CTTTCTCCCCAACGTCTACTCTAAACCTATATACACATATCCTCCCTCGC
AATCTCCATTAAACTGCCATTCGCGTACGATTCTTCGCTCGTCGTCGCGC
AAGAATTTTCCGTCCGTCCCTGTTTTTAAGACGACTCAAAAAGCCATGGG
CTCGCTTACGCCTGAGCAAACTAGGTTGATATGTCCGTTTAATGAGCTGC
ATGGCCTCTCCACCCGTGCTGTCCGTTGTAATCTCCTCTTCCAGCACCAT
GGGGGGGGGGATGAGGCGGGTGCTATTTTTGTTTTGGGGGGAGGCGGATA
TGGTGAGCTTGTGAACTCTCAGATTTATTACGTCGCAGTTTAAATCTGGG
CAACGTATAGGTAACAACAAGCAAATGAGTCCGTCACAGCTCTGGGCATA
ATTTAGCCCTGCCTTCTCCCATCTCCTCAGTGCCACCCCTCCAAGCCTTT
TCACTTACCAATACGTGCACCATCGATCATAGGGTCCGGTTTCTCTTCTC
GCGACCACACGAAGCCCAACGGCGCGGCTTGCTGCTGGATGTGAAGCTTC
TCCATGGCCTCGTCAACGTTGAAGACGCGGAGGTCGAAGAAGGGCCCCGT
CGTATTATTAGATTCCAGGGTGATGCTCCCGCTACTGGCTTCATCGCACG
CCCTACCTGAGGGAGGGGAGGCGGGCGTGGAGGACGACGACGACGGGGAG
GAAGAGGAGGAGTGTGGGAATTTGCCCGAAGATGATGAGGACGAGGATGA
GGACGAGGACATGGCGGACGACTGATGTTGGCCGGAGCACGTTAAAGCAG
CGGCACAAGGGAACGAGGGCGTCACATGTTGCCTGGCGGCACGGCACGCC
ACACCCGCCACTAGCCGCGACGTGGAAACCAAGGCACGCCGGGCCATGCC
AGCACCGAAGGGCATCATTGCGTTTATAACACTGTGTTGTGTCATGAGTG
CGGGAATGTGGTGCGTGACTTGTCAAGCAATAACGAGGAAGCACCCGCAT
CACGGGAGCGATGATCTCAATCATCTTTCAGTAAAAAGTTACACGGCAGA
CTCGGCGGACAAACGAGATAGGACGTTATTGAGTCTTTCGAAGGCCTGGG
CGAGTCCCGCTGTCGCGTCATGTCTCTCTGATGGTCTGCAAAGAGCTACG
GCTTCGTAATCCAGGTGAGGCCGTGCATGGCTGGATAAAAGGGTGGGCAA
CAACGCGTGGACACGCAAGACAACACCGACGCCAAAATTGTGAAGGTCGC
CAATCATTGCTGATCGCCCTCTGTCGTCAGTCAGCCGTGCCCCCTCACAC
ATACGCATCCAAACCCAGACCCACAGACAGCCGAGTACGTACGCGAGCCT
CACTGCCACGCCTACCGCTATTATAGCAGCAAGAGCACATTGCTTTGACA
TGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAAA
GGGGACGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACT
CGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGG
GAAGCAAACTGCTAGGGATCCCGACAGgtaaatacaaatttcctaaaatt
caaggtttcgcctgttttctgtgtgccatcatcctctttcacgcaatttc
ccctccttgtttcggcattcttccaaacacagCTAACTTGGACATGGAAC
AAGTAGGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTC
GTCTTTCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAA
CCCCTACTTCAAAAACAGTCAGAAGgtacgctcgagggagtgtcagacgt
ttgactcgtcggtttcgaagctgtgccttactttaagacactacatacat
ttatcattaaccacatttctgtacccacttttcttcctcccttacaacac
atatccctacacagACAGTCGAACCTCACCTCCTGTATGAGTTTCCGGAC
GACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGTGCGTCC
TGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTCGCAATG
ACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAGAAGTTT
TCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGACTACAGTT
GCGGTATTTGTGGTGGTAGTGTAAGAGGAGGAAGGAGGATGAGAAAAAGG
GAGGTCAGGAGGAGGACGAGGAAGACGAGGAGGAGAGGGAAAAGGAGGAG
AAAGAGCAATTTTGACTGCATCGATGATGATGATTGAGATAATTAAACGA
ATGAGTGGCTTTTGTATATAGATGTATAAGAAAGAAATCACTTTCTTG
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protein sequence of NO03G03190.1

>NO03G03190.1-protein ID=NO03G03190.1-protein|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MSSETAPAPIYGEGGGKGDGGGGEEVDAAKLQALDLPLLLTATVVKGFGR
GSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNP
YFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAI
RNDIAFARAALEEPEWKKFSSNNLGWTKSVAC*
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Synonyms
Publications