NO03G03190.1, NO03G03190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G03190.1
Unique NameNO03G03190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2354
Alignment locationchr3:948243..950840 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:948243..950840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G03190.1 vs.
Match: EWM29736.1 (riboflavin kinase [Nannochloropsis gaditana])

HSP 1 Score: 234.6 bits (597), Expect = 2.500e-58
Identity = 113/160 (70.62%), Postives = 127/160 (79.38%), Query Frame = 0 
Query:   18 GDGGG-GEEVDAAKLQALDLPLLLTATVVKGFGRGSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNPYFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAIRNDIAFARAALEEPEWKKFSSNNLGW 177
            GDGG  G  V+ A      LP LL A+VVKGFGRGSKLLGIPTANL+M+QVG +VD WPNGIY+GF  L+  +YKAVASIGTNPYFKNSQKTVEPHLL+EFPDDFYGEELKFLVCGYVRPE SF SL+ELV AIR+DI  AR ALE P+W+   +    W
Sbjct:   78 GDGGSDGSAVNGAGGTTPQLPFLLKASVVKGFGRGSKLLGIPTANLNMDQVGPVVDSWPNGIYYGFSCLKGDVYKAVASIGTNPYFKNSQKTVEPHLLHEFPDDFYGEELKFLVCGYVRPERSFASLEELVAAIRSDIEVARTALEAPDWRMLGTREAAW 237
The following BLAST results are available for this feature:
BLAST of NO03G03190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29736.12.500e-5870.63riboflavin kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03190NO03G03190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G03190.1NO03G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G03190.1.cds1NO03G03190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03190.1.cds2NO03G03190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G03190.1.cds3NO03G03190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G03190.1 ID=NO03G03190.1|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp
CTTGATTGTCACGCGTAACATTTCGTATGTATTTCATGAATGAATGTGTG
AAAAAGAATTTGTTCTTTTTGTTATATTCTTCCTCTTCCCTTGCTTTACT
CTTCTACCTCTGCAATCCGTCTAGATGACTTTATTTTTGATCCTTCAATG
TCTCGGCATGTGTTTCGCCTCCTTTACTATCCATCCCACCACCTCTCCCT
CTTTCTCCCCAACGTCTACTCTAAACCTATATACACATATCCTCCCTCGC
AATCTCCATTAAACTGCCATTCGCGTACGATTCTTCGCTCGTCGTCGCGC
AAGAATTTTCCGTCCGTCCCTGTTTTTAAGACGACTCAAAAAGCCATGGG
CTCGCTTACGCCTGAGCAAACTAGGTTGATATGTCCGTTTAATGAGCTGC
ATGGCCTCTCCACCCGTGCTGTCCGTTGTAATCTCCTCTTCCAGCACCAT
GGGGGGGGGGATGAGGCGGGTGCTATTTTTGTTTTGGGGGGAGGCGGATA
TGGTGAGCTTGTGAACTCTCAGATTTATTACGTCGCAGTTTAAATCTGGG
CAACGTATAGGTAACAACAAGCAAATGAGTCCGTCACAGCTCTGGGCATA
ATTTAGCCCTGCCTTCTCCCATCTCCTCAGTGCCACCCCTCCAAGCCTTT
TCACTTACCAATACGTGCACCATCGATCATAGGGTCCGGTTTCTCTTCTC
GCGACCACACGAAGCCCAACGGCGCGGCTTGCTGCTGGATGTGAAGCTTC
TCCATGGCCTCGTCAACGTTGAAGACGCGGAGGTCGAAGAAGGGCCCCGT
CGTATTATTAGATTCCAGGGTGATGCTCCCGCTACTGGCTTCATCGCACG
CCCTACCTGAGGGAGGGGAGGCGGGCGTGGAGGACGACGACGACGGGGAG
GAAGAGGAGGAGTGTGGGAATTTGCCCGAAGATGATGAGGACGAGGATGA
GGACGAGGACATGGCGGACGACTGATGTTGGCCGGAGCACGTTAAAGCAG
CGGCACAAGGGAACGAGGGCGTCACATGTTGCCTGGCGGCACGGCACGCC
ACACCCGCCACTAGCCGCGACGTGGAAACCAAGGCACGCCGGGCCATGCC
AGCACCGAAGGGCATCATTGCGTTTATAACACTGTGTTGTGTCATGAGTG
CGGGAATGTGGTGCGTGACTTGTCAAGCAATAACGAGGAAGCACCCGCAT
CACGGGAGCGATGATCTCAATCATCTTTCAGTAAAAAGTTACACGGCAGA
CTCGGCGGACAAACGAGATAGGACGTTATTGAGTCTTTCGAAGGCCTGGG
CGAGTCCCGCTGTCGCGTCATGTCTCTCTGATGGTCTGCAAAGAGCTACG
GCTTCGTAATCCAGGTGAGGCCGTGCATGGCTGGATAAAAGGGTGGGCAA
CAACGCGTGGACACGCAAGACAACACCGACGCCAAAATTGTGAAGGTCGC
CAATCATTGCTGATCGCCCTCTGTCGTCAGTCAGCCGTGCCCCCTCACAC
ATACGCATCCAAACCCAGACCCACAGACAGCCGAGTACGTACGCGAGCCT
CACTGCCACGCCTACCGCTATTATAGCAGCAAGAGCACATTGCTTTGACA
TGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAAA
GGGGACGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACT
CGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGG
GAAGCAAACTGCTAGGGATCCCGACAGCTAACTTGGACATGGAACAAGTA
GGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCTT
TCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCCT
ACTTCAAAAACAGTCAGAAGACAGTCGAACCTCACCTCCTGTATGAGTTT
CCGGACGACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGT
GCGTCCTGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTC
GCAATGACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAG
AAGTTTTCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGACT
ACAGTTGCGGTATTTGTGGTGGTAGTGTAAGAGGAGGAAGGAGGATGAGA
AAAAGGGAGGTCAGGAGGAGGACGAGGAAGACGAGGAGGAGAGGGAAAAG
GAGGAGAAAGAGCAATTTTGACTGCATCGATGATGATGATTGAGATAATT
AAACGAATGAGTGGCTTTTGTATATAGATGTATAAGAAAGAAATCACTTT
CTTG
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protein sequence of NO03G03190.1

>NO03G03190.1-protein ID=NO03G03190.1-protein|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MSSETAPAPIYGEGGGKGDGGGGEEVDAAKLQALDLPLLLTATVVKGFGR
GSKLLGIPTANLDMEQVGAMVDYWPNGIYFGFVFLRDQIYKAVASIGTNP
YFKNSQKTVEPHLLYEFPDDFYGEELKFLVCGYVRPEASFPSLDELVKAI
RNDIAFARAALEEPEWKKFSSNNLGWTKSVAC*
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mRNA from alignment at chr3:948243..950840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G03190.1 ID=NO03G03190.1|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at chr3:948243..950840+ (Nannochloropsis oceanica)
CTTGATTGTCACGCGTAACATTTCGTATGTATTTCATGAATGAATGTGTG
AAAAAGAATTTGTTCTTTTTGTTATATTCTTCCTCTTCCCTTGCTTTACT
CTTCTACCTCTGCAATCCGTCTAGATGACTTTATTTTTGATCCTTCAATG
TCTCGGCATGTGTTTCGCCTCCTTTACTATCCATCCCACCACCTCTCCCT
CTTTCTCCCCAACGTCTACTCTAAACCTATATACACATATCCTCCCTCGC
AATCTCCATTAAACTGCCATTCGCGTACGATTCTTCGCTCGTCGTCGCGC
AAGAATTTTCCGTCCGTCCCTGTTTTTAAGACGACTCAAAAAGCCATGGG
CTCGCTTACGCCTGAGCAAACTAGGTTGATATGTCCGTTTAATGAGCTGC
ATGGCCTCTCCACCCGTGCTGTCCGTTGTAATCTCCTCTTCCAGCACCAT
GGGGGGGGGGATGAGGCGGGTGCTATTTTTGTTTTGGGGGGAGGCGGATA
TGGTGAGCTTGTGAACTCTCAGATTTATTACGTCGCAGTTTAAATCTGGG
CAACGTATAGGTAACAACAAGCAAATGAGTCCGTCACAGCTCTGGGCATA
ATTTAGCCCTGCCTTCTCCCATCTCCTCAGTGCCACCCCTCCAAGCCTTT
TCACTTACCAATACGTGCACCATCGATCATAGGGTCCGGTTTCTCTTCTC
GCGACCACACGAAGCCCAACGGCGCGGCTTGCTGCTGGATGTGAAGCTTC
TCCATGGCCTCGTCAACGTTGAAGACGCGGAGGTCGAAGAAGGGCCCCGT
CGTATTATTAGATTCCAGGGTGATGCTCCCGCTACTGGCTTCATCGCACG
CCCTACCTGAGGGAGGGGAGGCGGGCGTGGAGGACGACGACGACGGGGAG
GAAGAGGAGGAGTGTGGGAATTTGCCCGAAGATGATGAGGACGAGGATGA
GGACGAGGACATGGCGGACGACTGATGTTGGCCGGAGCACGTTAAAGCAG
CGGCACAAGGGAACGAGGGCGTCACATGTTGCCTGGCGGCACGGCACGCC
ACACCCGCCACTAGCCGCGACGTGGAAACCAAGGCACGCCGGGCCATGCC
AGCACCGAAGGGCATCATTGCGTTTATAACACTGTGTTGTGTCATGAGTG
CGGGAATGTGGTGCGTGACTTGTCAAGCAATAACGAGGAAGCACCCGCAT
CACGGGAGCGATGATCTCAATCATCTTTCAGTAAAAAGTTACACGGCAGA
CTCGGCGGACAAACGAGATAGGACGTTATTGAGTCTTTCGAAGGCCTGGG
CGAGTCCCGCTGTCGCGTCATGTCTCTCTGATGGTCTGCAAAGAGCTACG
GCTTCGTAATCCAGGTGAGGCCGTGCATGGCTGGATAAAAGGGTGGGCAA
CAACGCGTGGACACGCAAGACAACACCGACGCCAAAATTGTGAAGGTCGC
CAATCATTGCTGATCGCCCTCTGTCGTCAGTCAGCCGTGCCCCCTCACAC
ATACGCATCCAAACCCAGACCCACAGACAGCCGAGTACGTACGCGAGCCT
CACTGCCACGCCTACCGCTATTATAGCAGCAAGAGCACATTGCTTTGACA
TGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAAA
GGGGACGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCACT
CGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGGG
GAAGCAAACTGCTAGGGATCCCGACAGGTAAATACAAATTTCCTAAAATT
CAAGGTTTCGCCTGTTTTCTGTGTGCCATCATCCTCTTTCACGCAATTTC
CCCTCCTTGTTTCGGCATTCTTCCAAACACAGCTAACTTGGACATGGAAC
AAGTAGGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTC
GTCTTTCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAA
CCCCTACTTCAAAAACAGTCAGAAGGTACGCTCGAGGGAGTGTCAGACGT
TTGACTCGTCGGTTTCGAAGCTGTGCCTTACTTTAAGACACTACATACAT
TTATCATTAACCACATTTCTGTACCCACTTTTCTTCCTCCCTTACAACAC
ATATCCCTACACAGACAGTCGAACCTCACCTCCTGTATGAGTTTCCGGAC
GACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACGTGCGTCC
TGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATTCGCAATG
ACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAAGAAGTTT
TCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGACTACAGTT
GCGGTATTTGTGGTGGTAGTGTAAGAGGAGGAAGGAGGATGAGAAAAAGG
GAGGTCAGGAGGAGGACGAGGAAGACGAGGAGGAGAGGGAAAAGGAGGAG
AAAGAGCAATTTTGACTGCATCGATGATGATGATTGAGATAATTAAACGA
ATGAGTGGCTTTTGTATATAGATGTATAAGAAAGAAATCACTTTCTTG
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Coding sequence (CDS) from alignment at chr3:948243..950840+

>NO03G03190.1 ID=NO03G03190.1|Name=NO03G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr3:948243..950840+ (Nannochloropsis oceanica)
ATGTCCTCCGAAACGGCCCCAGCACCAATATATGGCGAAGGTGGAGGAAA
AGGGGACGGAGGCGGGGGAGAGGAGGTCGACGCCGCAAAGCTTCAGGCAC
TCGACCTCCCGCTGCTCCTCACGGCAACTGTGGTCAAGGGCTTTGGAAGG
GGAAGCAAACTGCTAGGGATCCCGACAGCTAACTTGGACATGGAACAAGT
AGGAGCCATGGTAGACTACTGGCCTAACGGCATCTATTTTGGTTTCGTCT
TTCTGCGAGACCAAATCTACAAAGCCGTGGCCAGCATCGGCACCAACCCC
TACTTCAAAAACAGTCAGAAGACAGTCGAACCTCACCTCCTGTATGAGTT
TCCGGACGACTTTTATGGAGAGGAGCTTAAATTTCTTGTTTGTGGGTACG
TGCGTCCTGAAGCTTCCTTTCCTTCGCTTGATGAGCTGGTGAAGGCCATT
CGCAATGACATTGCCTTTGCAAGAGCGGCGTTGGAGGAGCCGGAGTGGAA
GAAGTTTTCGAGTAATAATTTGGGATGGACTAAGAGTGTGGCATGTTGA
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Synonyms
Publications