NO03G03160, NO03G03160 (gene) Nannochloropsis oceanica

Overview
NameNO03G03160
Unique NameNO03G03160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length746
Alignment locationchr3:942252..942997 +

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Properties
Property NameValue
DescriptionCytochrome c oxidase biogenesis protein cmc1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:942252..942997 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Homology
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_011397977.1 (COX assembly mitochondrial protein 2 [Auxenochlorella protothecoides] >KFM25089.1 COX assembly mitochondrial protein 2 [Auxenochlorella protothecoides])

HSP 1 Score: 81.6 bits (200), Expect = 1.300e-12
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0 
Query:    1 MHPPLHR-PHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKA 62
            MHPPL++  HP C  VIDAL  CH++  +AKFWG C ++K ALD CFR EK+D R +NF KA
Sbjct:    1 MHPPLYKNKHPSCIEVIDALNRCHKERSIAKFWGVCTDQKLALDACFRQEKKDNRARNFEKA 62
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_024573806.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG37437.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 80.9 bits (198), Expect = 2.200e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKE 85
            MH PL RPHPDCQ  I ALL CH  +P AKF+GACN+ K ALD+CF+ EK   R +N   A   D    + + ++  +V AE++
Sbjct:    1 MHAPLDRPHPDCQIEIKALLDCHNDNPYAKFFGACNDVKSALDQCFKKEKIRIRSENLRHAKASDAYVRRKMQERRDRVAAEEK 84
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BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_008911221.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI38032.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK78246.1 hypothetical protein, variant [Phytophthora parasitica] >ETL31681.1 hypothetical protein, variant [Phytophthora parasitica] >ETL84911.1 hypothetical protein, variant [Phytophthora parasitica] >ETM38094.1 hypothetical protein, variant [Phytophthora parasitica] >ETN03448.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO66801.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP07922.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP35952.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 79.7 bits (195), Expect = 4.900e-12
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ 87
            MH PL RPHPDCQ  I ALL CH  +P AKF+GAC E K ALD CF+ EK   R +NF  A   D    + + ++  +V AE++++
Sbjct:    1 MHAPLDRPHPDCQ-AIKALLECHENNPYAKFFGACGEVKTALDHCFKNEKIRMRSENFKHAKASDAYVRQKMQERRDRVAAEEKAR 85
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_008875424.1 (hypothetical protein H310_10750 [Aphanomyces invadans] >ETV96113.1 hypothetical protein H310_10750 [Aphanomyces invadans])

HSP 1 Score: 79.7 bits (195), Expect = 4.900e-12
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQA 82
            MH  L +PHP+CQ ++DAL  CH ++P  KF GACN+ K AL++CF  E   RRK N  KA   +  W +   QKEA   A
Sbjct:    1 MHSSLDKPHPECQAIVDALRECHAENPYGKFVGACNDMKAALNECFAKENAFRRKVNMDKARAFNKEWKEFKQQKEAAASA 81
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: KUF76763.1 (hypothetical protein AM587_10011162 [Phytophthora nicotianae])

HSP 1 Score: 77.0 bits (188), Expect = 3.200e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHV---------IDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ 87
            MH PL RPHPDCQ V         I ALL CH  +P AKF+GAC E K ALD CF+ EK   R +NF  A   D    + + ++  +V AE++++
Sbjct:    1 MHAPLDRPHPDCQAVRTAIRHRKEIKALLECHENNPYAKFFGACGEVKTALDHCFKNEKIRMRSENFKHAKASDAYVRQKMQERRDRVAAEEKAR 95
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_012205899.1 (hypothetical protein SPRG_11504 [Saprolegnia parasitica CBS 223.65] >KDO23411.1 hypothetical protein SPRG_11504 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKA 62
            MH  L RPHP+CQ ++DAL  CH ++PL KF GACN+ K AL++CF  E   RRK N  KA
Sbjct:    1 MHSSLDRPHPECQEIVDALRICHEENPLLKFGGACNDIKAALNQCFAKETHHRRKINLEKA 61
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_008619038.1 (hypothetical protein SDRG_14667 [Saprolegnia diclina VS20] >EQC27618.1 hypothetical protein SDRG_14667 [Saprolegnia diclina VS20])

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-10
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKA 62
            MH  L RPHP+CQ ++DAL  CH ++P  KF GACN+ K AL++CF  E   RRK N  KA
Sbjct:    1 MHSSLDRPHPECQEIVDALRICHEENPFLKFGGACNDIKAALNQCFAKETHHRRKINLEKA 61
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: OQR83185.1 (hypothetical protein THRCLA_23176 [Thraustotheca clavata])

HSP 1 Score: 73.6 bits (179), Expect = 3.500e-10
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDDGAWSK 71
            MH  L RPHP+CQ ++DAL  CH ++P  KF GACN+ K AL++CF  E   RRK N  KA + + A+ +
Sbjct:    1 MHSSLDRPHPECQEIVDALRLCHAENPWLKFGGACNDIKAALNQCFAKENLHRRKVNLEKARKFNKAYDE 70
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: OQR85339.1 (hypothetical protein ACHHYP_11924 [Achlya hypogyna])

HSP 1 Score: 73.6 bits (179), Expect = 3.500e-10
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0 
Query:    1 MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKA 62
            MH  L RPHP+CQ ++DAL  CH ++P  KF GACN+ K AL++CF  E   RRK N  KA
Sbjct:    1 MHSSLDRPHPECQEIVDALRLCHEENPWLKFGGACNDIKAALNQCFAKENMHRRKVNLEKA 61
[Close]
BLAST of NO03G03160 vs. NCBI_GenBank
Match: XP_020107247.1 (COX assembly mitochondrial protein 2 homolog [Ananas comosus] >XP_020107249.1 COX assembly mitochondrial protein 2 homolog [Ananas comosus] >XP_020107250.1 COX assembly mitochondrial protein 2 homolog [Ananas comosus] >OAY63857.1 COX assembly mitochondrial protein 1 [Ananas comosus])

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-9
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0 
Query:    1 MHPP--LHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEKEDRRKQNFAKAPRDD---GAWSKIVAQKE 77
            MHPP  LHR HP C  +I+A   CH  HP+AKF+G C E K  LD+CFR EK  +RK NF ++ +      A+ K +A+KE
Sbjct:    1 MHPPLTLHR-HPMCAEIIEAFQKCHTDHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEESKKFKERLQAYRKEMAEKE 80
The following BLAST results are available for this feature:
BLAST of NO03G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_011397977.11.300e-1258.06COX assembly mitochondrial protein 2 [Auxenochlore... [more]
XP_024573806.12.200e-1247.62Uncharacterized conserved protein [Plasmopara hals... [more]
XP_008911221.14.900e-1247.67hypothetical protein, variant [Phytophthora parasi... [more]
XP_008875424.14.900e-1246.91hypothetical protein H310_10750 [Aphanomyces invad... [more]
KUF76763.13.200e-1144.21hypothetical protein AM587_10011162 [Phytophthora ... [more]
XP_012205899.17.000e-1155.74hypothetical protein SPRG_11504 [Saprolegnia paras... [more]
XP_008619038.12.000e-1054.10hypothetical protein SDRG_14667 [Saprolegnia dicli... [more]
OQR83185.13.500e-1048.57hypothetical protein THRCLA_23176 [Thraustotheca c... [more]
OQR85339.13.500e-1054.10hypothetical protein ACHHYP_11924 [Achlya hypogyna... [more]
XP_020107247.11.000e-948.15COX assembly mitochondrial protein 2 homolog [Anan... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03160.1NO03G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572466gene_1509Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03160.1NO03G03160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03160 ID=NO03G03160|Name=NO03G03160|organism=Nannochloropsis oceanica|type=gene|length=746bp
ATGCACCCGCCGCTTCATCGGCCACATCCTGACTGTCAGCACgtaagttt
gtttccgtttgtacatggggaggaaggcaaatgtttaatcagtacccacc
cgtaaagtggagaagagaaggggaagagaggttggggcgagctattgaga
acgcagggagaaaggaacgcaaatccatttgactcgtgtgctgtcagaac
gaaaaccccgtcctttggcaacctcccctccccaaggcgtgctttcgtcc
cagcccccccctcaagcagaccgcacccttcacattgtgaatgaaagcat
tgaagcatgcgtgcagcaaagtacctgattttcattgtaatcctcactgt
cctcatgcagGTGATTGACGCTCTGCTTTCGTGCCACCGTCAGCATCCCT
TGGCCAAGTTTTGGGGGGCGTGCAACGAGGAGAAGTGGGCATTGGACAAA
TGCTTTCGGgtatgtacttcagccaagacacctttgtaagagttttgaca
taaactggaaagttcgcaatgcatcatacctgcgtgatggggttcttcgc
gtttttgacctcttacattgtttttccccctctcatctcctcgtctttca
cacaatcccattcctcgataattaagGTGGAGAAGGAAGACCGCCGGAAG
CAGAATTTTGCGAAGGCCCCTCGCGATGATGGGGCATGGTCCAAGATTGT
GGCACAAAAAGAAGCGCAAGTGCAGGCAGAGAAGGAAAGCCAATGA
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protein sequence of NO03G03160.1

>NO03G03160.1-protein ID=NO03G03160.1-protein|Name=NO03G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MHPPLHRPHPDCQHVIDALLSCHRQHPLAKFWGACNEEKWALDKCFRVEK
EDRRKQNFAKAPRDDGAWSKIVAQKEAQVQAEKESQ*
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Synonyms
Publications