NO03G03140, NO03G03140 (gene) Nannochloropsis oceanica

Overview
NameNO03G03140
Unique NameNO03G03140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3344
Alignment locationchr3:937592..940935 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:937592..940935 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G03140 vs. NCBI_GenBank
Match: EWM29729.1 (hypothetical protein Naga_100022g31 [Nannochloropsis gaditana])

HSP 1 Score: 348.6 bits (893), Expect = 6.400e-92
Identity = 255/662 (38.52%), Postives = 337/662 (50.91%), Query Frame = 0 
Query:    1 MSLRDLIYSQSQGTEYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEAAIWRRTMNRFRSAPESVKWRGLRPSRGAPLYHWPTSLLADCQNRPALMHLTLLRKLLVMCLAVRDVPSVAATLRLIQELQPRVDVASLEANTWLLTRLAEREAAATAKEIENDHVAATVSTSGSQLHDTSTDPTSR-PYACRLLLFLRNVMGGRIELPMTAGDVVGEQPKAVAPPDYLRVLALSKLLNFLISGGYLGYAQDLVRQEAFLRPFGPSPHVLAIRALLPCLEAAXXXXXXXXXXXXXXXXXXXXXXXCRGGKRISVEAAFARMVRDPSKFFTAGLTNLQSQXXXXXXXXXXXXXXXXXXXXKGVEALIRDLDKALATGV-APSGVLAVRIGLLRLRGDAKDRRTVLRAVHANCQTNPDSPRAQQLGYMALKLVKGQDDEEALGFLKRWVRLDPTADEAVGGVVHAFRRQLLRSYRDPTTPVLISRARLVRALVDRLLTLLPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGVEETNDNLTRPWKTVLSSIDWFQRANVQGVLAGRYEAWSPACRGLEESASLDLFEPMGVRGERQGGREDAFLYNWYEILKEEAAEEESGSEGRKRTRQKRTERDALWAAVK 661
            MSLR+LIYSQ                                    LLEAA+WR+   R R  P S +WRGLRPSR APLYHWPTS+L DCQ++P L+H  LL++LL + +A RDV +VA TL L+  LQPR++  S E N WLLT LA REA  T     +D       T+ ++       P+++ P A RLLLFLR +M  RI+LP  A   V    K +APP+ LR+LAL+KL+NFL+ GG L  A++ ++QE+FLRPF  SP++ +++AL  CLEA                          GG        F  +   PS+ F  G     S                     +  +A + ++ +A+  G    SG+LA  + +LR+ G  + R  V   V A CQ +PDSPRAQ++ + A  L +GQD +  L  LKRW  LDP++D A+ G++HA+RRQLLRSYRDP +PVL+SR RL RAL+DRLLTL PP              XXXXXXXXXXX                         EG          P +  +  + W  R  ++  LAG YEAWSP CRG E SA L+LF    V       RE AF Y W  +L         G +G  R+R +  E + +WA VK
Sbjct:    1 MSLRELIYSQQDDVH-------GSDCPSTEEQQPIHAPQGLEVANGLLEAAMWRQ---RSRDTPRSCRWRGLRPSRRAPLYHWPTSILPDCQDKPVLLHTVLLQRLLTLFVAARDVAAVATTLGLLHALQPRLEDTSFEGNLWLLTELAAREAGDTPYSGRDD-------TNDAEAGARRRLPSAQGPRARRLLLFLRTMMSARIQLPEAAD--VENGHKTIAPPNTLRILALAKLVNFLVEGGRLSEAREALQQESFLRPFAASPYLRSMKALFACLEAGLSDGG--------------------GGDGGRGRRFFNDLAAAPSRCFAPGPPQRGS-----------------PASLRWAQAALEEILRAMDAGKDLQSGLLATSLAMLRMGGGQRRRERVCNLVLARCQRHPDSPRAQEIAHSASLLARGQDHKATLRHLKRWQALDPSSDRALAGLLHAYRRQLLRSYRDPKSPVLLSRPRLTRALIDRLLTLPPP------------LGXXXXXXXXXXXHLRYFRLLAAYLGPLPPHRPGGLHREG----------PGRAPV-RLHWGDRGALESALAGAYEAWSPGCRGAEGSA-LELF---NVADLGPCPRERAFSYQWDRVL---------GEDGWPRSR-RGGEMERMWALVK 569
The following BLAST results are available for this feature:
BLAST of NO03G03140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29729.16.400e-9238.52hypothetical protein Naga_100022g31 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005579NSK005579Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03140.1NO03G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572459gene_1508Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g31gene881Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03140.1NO03G03140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03140 ID=NO03G03140|Name=NO03G03140|organism=Nannochloropsis oceanica|type=gene|length=3344bp
ATGTCGCTGCGAGATCTCATCTACTCTCAAAGCCAAGGCACTGAGTACAA
TGAGGACGACGAGGAAGAGGGTCAACGGCATCAACAGACGCAAGAGGAGC
AGGAACGGGATGAAGTAGCGGCCGCCGCGACCACAGGCCTTCTCGAGGCA
GCAATTTGGCGGCGGACGATGAATAGGTTTAGGAGCGCACCTGAATCAGT
CAAGTGGCGCGGGTTGCGGCCAAGCCGCGGCGCCCCTTTATACCACTGGC
CCACTAGCCTTCTTGCAGACTGCCAGAACCGACCGGCCTTGATGCACCTC
ACGCTCCTCCGAAAGCTCCTCGTCATGTGCCTGGCTGTGCGTGATGTGCC
GAGTGTGGCGGCGACACTTAGGCTTATCCAAGAATTGCAGCCCCGCGTGG
ACGTTGCGAGTCTGGAAGCCAACACGTGGCTCTTGACCCGGTTAGCCGAG
CGTGAAGCAGCCGCCACCGCCAAGGAAATCGAAAACGATCATGTTGCTGC
GACTGTGTCTACGAGTGGCAGCCAACTGCACGACACTAGCACAGATCCAA
CCTCTCGTCCCTATGCCTGTCGCCTACTACTGTTCCTGCGTAATGTCATG
GGAGGCCGCATCGAGCTGCCTATGACGGCGGGGGACGTGGTGGGGGAGCA
GCCAAAAGCAGTGGCACCACCTGACTATCTCCGAGTCCTTGCCTTATCTA
AATTATTGAACTTCCTCATCTCGGGTGGATATTTGGGATATGCACAGGAT
TTGGTGAGACAGGAGGCGTTTTTGCGCCCTTTTGGTCCGAGTCCGCATGT
GCTGGCCATTCGGGCGTTACTTCCTTGCTTGGAGGCTGCGCGTACGTGTA
TGACTGAGGCAACAGAGGTGGAAGAGGGGGAAGAGGAGGATGAAGAGGAG
AGCGGTGAATGCAGAGGGGGCAAGAGAATAAGTGTAGAAGCGGCGTTTGC
CCGAATGGTGCGTGACCCGAGCAAGTTCTTCACAGCTGGCCTGACAAACC
TTCAGTCACAGCACCACCAGCAACGCGAGCAGCACCAACACCACCAGCAG
CACCAGCGGCGACTGCAACGTAAGGGCGTGGAGGCGCTTATCCGAGACCT
GGATAAAGCACTCGCCACAGGAGTGGCCCCCTCAGGGGTGCTGGCTGTCC
GTATCGGATTGCTCCGCCTGCGAGGGGATGCCAAAGACCGACGAACTGTC
TTGAGGGCTGTACATGCGAATTGTCAAACCAATCCTGATTCCCCCCGGGC
GCAACAGCTGGGTTATATGGCCCTGAAGCTTGTGAAGGGACAAGATGATG
AGGAGGCGCTGGGTTTCTTGAAGAGATGGGTGCGGCTCGACCCAACGGCG
GATGAGGCGGTTGGAGGGGTGGTGCATGCGTTTCGACGGCAGCTGCTTCG
CTCCTATgtgcgtagtactatcacgacatttactcctcgtccttttcctt
tttcttctttattttctttatcgccttcgccaactccttcatcttcacct
tcttcaatgtccgttctgtgtgaacatttctttgggtgtagcgtcttccg
acagtttcacgccttattgtctcgttcggtctatccatctctaacaggcg
cccaagcggcactcttacacctcaatcctcactctcactcttcctctctc
tctcccacacatacacacacattcattcattcatagCGAGATCCCACTAC
TCCCGTCCTCATCAGTCGAGCCCGGCTGGTTCGCGCCCTGGTCGATCGCC
TATTAACCCTTCTCCCACCCTCCTCCTCCTCCTTCTCCTCCTCTTCCTCT
GCGTCCACCCTCCATCTCCACCTCAAGTACTTCCGGTGGCTTGCGATGTA
CTTAGGCCCCGTACCAGAGAAGCAGAGGGAAGAGGAGGAGGAGGAGGAGG
AGAAGGATGAACCGAGGGAGGAAGGGGTGGAGGAAACAAACGACAACTTG
ACCCGCCCGTGGAAAACTGTATTATCATCGATTGATTGGTTCCAGCGGGC
AAATGTCCAGGGAGTGCTAGCTGGGAGGTATGAGGCATGGAGTCCTGCTT
GTCGCGGTCTAGAGGAAAGTGCCTCCTTGGACTTGTTCGAGCCCATGGGG
GTTCGAGGAGAGAGACAGGGAGGGAGGGAGGACGCGTTTCTGTATAACTG
GTATGAGATTTTGAAAGAGGAGGCAGCGGAGGAGGAGAGTGGGTCGGAGG
GGAGGAAAAGGACGAGGCAAAAGAGGACGGAGAGGGATGCGCTCTGGGCA
GCTGTCAAGTATTCGCGCACTGGTTTGCATGATCAGCGAGAGAACGAAGA
GGACGAGAACGAGGAGGGGGAGCACGGGAGGGCGGAAGGGCATGGAGCCA
ATTACCGCCACGATTATGACGACGAAGACACCGAGAGCGAGGATGAGGAT
GATACAGGGGGCCCAATATTCCTCCAACACGGAAAGGACGATGCGGATGA
CCTCCTCCTCGAAACAGTTTGCGGTCGAACCGACGACAAAGACAACGATC
CTCCCCTTACGCCAGCAGCAGCAGCGGAAGAGCCCCTCCTCCCTCCCTCC
CTACGTCAAGGCCTCCTTCTCCTCACCTACAAAGCAGTGGTCGCCGCCCA
CTTTATGGGTCCCCAGAACCCGTACACCATCTTCGCCGTCCGTTCCTTGT
GGGAAAAAACACAAGGAGGCCCTCTTCTTGGCAAACGCACTGCCGCCCCT
CCTGCCCTCGCACCCCACTTCGGCCACTGGCTTCTCTTTTCCAAGCTCCG
AGGTGTGTTTGGGATTGATGTACGTGCATCGTTGTTGCTGAGTGATGGTT
ACATCTTGGCTATGAATCAAGTGCAGGTGCCACCGCACCTCTCCCTCTTA
CCGATGGAGGAAGGCCGAGCAAGAGAAGGACCCCTTAATTTGGGCTTGGC
GGAGGCGGCATGCGGTTGGCCATTGCCTGCGCTTCATCCACCGCGTGTGT
TACCTCCTGCTGCTGCAGCAGCAGGAGCAGGGGAAGCGGTGGATGGGATG
GTGTTTCGTCCTCGGCCTTTGCCGATGGCGACGGCGAGAGCCTCTCAGGT
GCTGATTCGAAGGGCATTCAGTAAGGCAAAGAGGGATCGGGAGCAAAAGA
GGGAAGAGAAGGAGGGGAAAGAGAAACGGCAAAAATGTAAAAGGGGGAGT
GGAGGTGGTAATGGGCAGAAGGAGGCGGCTGAGAAGGAGGAGAACGAAGA
GGAGGAGGAGGAGGAGAATGCATGTGAGATAGGTATGAAGGATGTTGATT
GAGAAAAATGAAGATTCAACAAGGATGGAGATAGAGCTTTGAATGCCTTG
GTTCATAAAAGGAAAAAAAGTTTGTACAAGAGTGGCCCTGGAAA
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protein sequence of NO03G03140.1

>NO03G03140.1-protein ID=NO03G03140.1-protein|Name=NO03G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=991bp
MSLRDLIYSQSQGTEYNEDDEEEGQRHQQTQEEQERDEVAAAATTGLLEA
AIWRRTMNRFRSAPESVKWRGLRPSRGAPLYHWPTSLLADCQNRPALMHL
TLLRKLLVMCLAVRDVPSVAATLRLIQELQPRVDVASLEANTWLLTRLAE
REAAATAKEIENDHVAATVSTSGSQLHDTSTDPTSRPYACRLLLFLRNVM
GGRIELPMTAGDVVGEQPKAVAPPDYLRVLALSKLLNFLISGGYLGYAQD
LVRQEAFLRPFGPSPHVLAIRALLPCLEAARTCMTEATEVEEGEEEDEEE
SGECRGGKRISVEAAFARMVRDPSKFFTAGLTNLQSQHHQQREQHQHHQQ
HQRRLQRKGVEALIRDLDKALATGVAPSGVLAVRIGLLRLRGDAKDRRTV
LRAVHANCQTNPDSPRAQQLGYMALKLVKGQDDEEALGFLKRWVRLDPTA
DEAVGGVVHAFRRQLLRSYRDPTTPVLISRARLVRALVDRLLTLLPPSSS
SFSSSSSASTLHLHLKYFRWLAMYLGPVPEKQREEEEEEEEKDEPREEGV
EETNDNLTRPWKTVLSSIDWFQRANVQGVLAGRYEAWSPACRGLEESASL
DLFEPMGVRGERQGGREDAFLYNWYEILKEEAAEEESGSEGRKRTRQKRT
ERDALWAAVKYSRTGLHDQRENEEDENEEGEHGRAEGHGANYRHDYDDED
TESEDEDDTGGPIFLQHGKDDADDLLLETVCGRTDDKDNDPPLTPAAAAE
EPLLPPSLRQGLLLLTYKAVVAAHFMGPQNPYTIFAVRSLWEKTQGGPLL
GKRTAAPPALAPHFGHWLLFSKLRGVFGIDVRASLLLSDGYILAMNQVQV
PPHLSLLPMEEGRAREGPLNLGLAEAACGWPLPALHPPRVLPPAAAAAGA
GEAVDGMVFRPRPLPMATARASQVLIRRAFSKAKRDREQKREEKEGKEKR
QKCKRGSGGGNGQKEAAEKEENEEEEEEENACEIGMKDVD*
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Synonyms
Publications