NO03G03120, NO03G03120 (gene) Nannochloropsis oceanica

Overview
NameNO03G03120
Unique NameNO03G03120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1986
Alignment locationchr3:932418..934403 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:932418..934403 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
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BLAST of NO03G03120 vs. NCBI_GenBank
Match: EWM29781.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 357.5 bits (916), Expect = 5.300e-95
Identity = 178/211 (84.36%), Postives = 192/211 (91.00%), Query Frame = 0 
Query:    1 MEEAGEEEEGVLYVHCNRCQQSLSSFYKSSCGHCFCVDCATTHFAKDPCCPVCGLRLSQKHFRGPFDVGISAGEPVEAAMYKNVFTSNRLDEVLQKALLCLPAVEDVINLVTTQLYLENQRSQILREKVERKLRKARGDLKLTVQEARSKIAILSSQLTEAEAWKRKLNDELSTAKQEVYEVHRKNKSMEQMLARLRNDGHAIPAALPLPS 212
            ME+  EEEEGVLYVHCNRCQQ LSSFYKSSCGHCFCV+CAT HFAKDPCCPVCGLRLSQKHFRGPFDVGIS  EP+E  M+KNVF+SNRLDEVLQ+AL  LPAVEDVI+LVTTQLYLENQRSQ  RE+VERK RK RGDLKLTVQEARSKIA+LSSQL EAEAWKRKLNDEL+TAKQE +E HRKNKSMEQ+LARLRNDGHAIP+AL  P+
Sbjct:    1 MEDTCEEEEGVLYVHCNRCQQVLSSFYKSSCGHCFCVECATAHFAKDPCCPVCGLRLSQKHFRGPFDVGISIAEPIETIMFKNVFSSNRLDEVLQRALQSLPAVEDVISLVTTQLYLENQRSQFQRERVERKWRKVRGDLKLTVQEARSKIALLSSQLAEAEAWKRKLNDELATAKQEAHEFHRKNKSMEQILARLRNDGHAIPSALSSPA 211
The following BLAST results are available for this feature:
BLAST of NO03G03120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29781.15.300e-9584.36conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005581NSK005581Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03120.1NO03G03120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667432gene_1506Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g33gene883Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03120.1NO03G03120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03120 ID=NO03G03120|Name=NO03G03120|organism=Nannochloropsis oceanica|type=gene|length=1986bp
ACAGGCAAGCAGCCCTCAACAGTCCATCCCCCCCTTGCCACTTCATCAGC
CATGGAAGAAGCCGGCGAGGAGGAAGAGGGCGTACTATACGTCCACTGCA
ATCGGTGCCAGCAGAGCCTCTCCTCCTTCTACAAATCCTCTTGTGGGCAC
TGCTTTTGCGTGGACTGTGCCACCACTCATTTCGCTAAAGACCCCTGCTG
CCCCGTCTGTGGCCTTCGCCTCTCCCAAAAGCACTTCCGGGGACCCTTCG
ACGTAGGCATCTCTGCAGGCGAGCCCGTGGAAGCGGCCATGTACAAGAAC
GTCTTCACTTCCAATCGATTGGATGAGGTTCTGCAAAAGGCCTTATTGTG
CTTACCAGCGGTCGAAGACGTCATCAACCTCGTTACCACCCAGTTGTACC
TGGAGAATCAACGCAGTCAGATCCTGCGGGAGAAGGTGGAGCGGAAGCTC
AGGAAGGCACGGGGGGATCTGAAGCTCACGGTGCAGGAGGCCAGGAGTAA
GATTGCCATCCTTTCCTCCCAGCTTACAGAGGCAGAGGCTTGGAAACGCA
AACTTAgtacgtagagggaggggggaagggatggtgaggagcgagggaag
gcgatatttgtgtgtatgaggaagacgtaggaaaggttcttcataacgag
ttttcattcatccctctcttcctccctcccctccttccttctttcctcgg
catagATGACGAGCTATCCACGGCCAAGCAGGAGGTGTATGAGGTCCACC
GCAAGAATAAGTCCATGGAGCAGgtaagggggcgagaaattgggagagag
agacaaagttaaatcccatgggtgtcctcatctatgctcctcctcgcttg
gcaccgcaatctcctcctccttctcctcctcctccttctactcctttttc
cttctttgcctcatctcctccctcccccctctccttcccccttgccttgc
ccagATGCTTGCACGTCTTCGCAACGACGGCCACGCCATCCCTGCCGCCC
TTCCACTCCCCAGCCCGGCCTCGACACCTCCCCATCAATACCAACACCTC
CGCCAGCAACCGCAGCGATCGCAGCAGCAGCAGCAGCAGTACTACCCCCC
TCCTTCCCCACGTATCAGCGCCAGCAGCAGCAAGgtaagtggggaaatgc
acagagcaaatgtcattcactcctccctccttcccgccacttcttctcaa
ttcgcccctccctccctcctttcctacctacctacatcctcacctcagTC
CCCCAGTGGGCTCCAATTCCCGCAGCAGCAGCTGCTGCATCGTCCCGCCT
CCGCCGCCCGCACTATCTCCCCTCACCACCCAGGAGAAGGAGGCGGAGGA
GGAGGAGATGGAGGGAGGGGGTTCCAAAATTCTTTGGTTCAGCCTACCCC
ATCTCGGAGTATGAGTGCTGGCAGCAGCAACGGCAGCATTTCATTGTCTC
GCTCTCTGTCGCCGCATCATTATCATCATCATCGTGGGGGGGGCTTGGCC
GTCGGTGTAGGGGTGGGGGGGACGGGCGCTTGTTCACCCGCCGGGGGTCG
TTCCTCCCACGCGTCCTCCTCCTCGCCTTTTGGAGGGAGATCTTTTGGCG
CGGTAAGTGATTACAGAGTGCCTTATTGAGGGAGGGAGAGACGGAGGGAG
GAAGGGGAAAAGAGAAGGAGGGAGGAATGCTTTCTTTTCTTGCTCCTCTC
TGTAGGTACTCCTCTTTGTAGAAGGTCTTCTTCCGTACTGGAGGGGAAGA
AATGGAGAGAGGGGGGGGGAAGGACGAGAGGGGGGGAGGGAGGGCGAGAT
GTACCCTCGTAAGGCTGAGATTTACAACTACAACTACAGAAGCAACAACA
CCGCGACCAACAGACTGACAGATCTGGCAGCAGCAGCAGCAGCCACAAAA
ATTAGAGAAATTAAAGTCGAAGAAATATAGTGCCTGCTTTCCTTGTTGTT
GGGTGGGTGGGTGGGTGGGAGAGAGAGAAAGAGAGA
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protein sequence of NO03G03120.1

>NO03G03120.1-protein ID=NO03G03120.1-protein|Name=NO03G03120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MEEAGEEEEGVLYVHCNRCQQSLSSFYKSSCGHCFCVDCATTHFAKDPCC
PVCGLRLSQKHFRGPFDVGISAGEPVEAAMYKNVFTSNRLDEVLQKALLC
LPAVEDVINLVTTQLYLENQRSQILREKVERKLRKARGDLKLTVQEARSK
IAILSSQLTEAEAWKRKLNDELSTAKQEVYEVHRKNKSMEQMLARLRNDG
HAIPAALPLPSPASTPPHQYQHLRQQPQRSQQQQQQYYPPPSPRISASSS
KSPSGLQFPQQQLLHRPASAARTISPHHPGEGGGGGGDGGRGFQNSLVQP
TPSRSMSAGSSNGSISLSRSLSPHHYHHHRGGGLAVGVGVGGTGACSPAG
GRSSHASSSSPFGGRSFGAVSDYRVPY*
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Synonyms
Publications