NO03G02800, NO03G02800 (gene) Nannochloropsis oceanica

Overview
NameNO03G02800
Unique NameNO03G02800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1190
Alignment locationchr3:840179..841368 +

Link to JBrowse

Properties
Property NameValue
DescriptionNuclear cap-binding protein subunit 2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:840179..841368 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005846nuclear cap binding complex
Vocabulary: Molecular Function
TermDefinition
GO:0000339RNA cap binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0045292mRNA cis splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR027157NCBP2
IPR000504RRM_dom
Homology
BLAST of NO03G02800 vs. NCBI_GenBank
Match: CRG90515.1 (Nuclear cap-binding protein subunit 2 [Talaromyces islandicus])

HSP 1 Score: 176.4 bits (446), Expect = 7.700e-41
Identity = 80/141 (56.74%), Postives = 104/141 (73.76%), Query Frame = 0
Query:   14 YWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQSMSD 155
            Y DR +   F+D  ++L+    +Y+GNLSF TTE QIH+ F+K G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGR+   Q M +
Sbjct:   27 YNDRDEADKFEDPNDNLKDATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFQKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFQEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRSLEEQRMRE 167          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_020121117.1 (Nuclear cap-binding protein subunit 2 [Talaromyces atroroseus] >OKL60996.1 Nuclear cap-binding protein subunit 2 [Talaromyces atroroseus])

HSP 1 Score: 175.6 bits (444), Expect = 1.300e-40
Identity = 78/135 (57.78%), Postives = 102/135 (75.56%), Query Frame = 0
Query:   16 DRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ 151
            DR++   ++D  ++LR    +Y+GNLSF TTE QIH+ F+K G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGR+   Q
Sbjct:   29 DREEAEKYEDPADNLRNATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFQKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFQEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRSVAEQ 163          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_024702424.1 (small subunit of nuclear cap-binding protein complex [Aspergillus steynii IBT 23096] >PLB47122.1 small subunit of nuclear cap-binding protein complex [Aspergillus steynii IBT 23096])

HSP 1 Score: 175.6 bits (444), Expect = 1.300e-40
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 0
Query:    5 LDTDPQPLVYWDRKQFTNFQDQIN-------SLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D   +P  Y+  K+   +QD++         LRG   +Y+GNLSF TTE QIH+ FSK G +KR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:    9 VDRLDRPSAYYVGKKKRRYQDEMEEQEDQNAKLRGATTLYVGNLSFYTTEEQIHELFSKCGEVKRLVMGLDRFNKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 157          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: OQD67325.1 (hypothetical protein PENDEC_c039G06918 [Penicillium decumbens])

HSP 1 Score: 173.3 bits (438), Expect = 6.600e-40
Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D I+ L+G   +Y+GNLSF TTE QIH+ FSK G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   39 EDPIDKLQGATTLYVGNLSFYTTEEQIHELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYIHQDALDCLKYIGGTKLDERIIRADLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 161          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: EPS40288.1 (hypothetical protein H072_5905 [Dactylellina haptotyla CBS 200.50])

HSP 1 Score: 172.6 bits (436), Expect = 1.100e-39
Identity = 85/152 (55.92%), Postives = 108/152 (71.05%), Query Frame = 0
Query:   10 QPLVYWDRKQFTN---FQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQSMSDPLAE 159
            +P  Y+D+    N    Q + + L+    +Y+GNLSF TTE QIH+ FSK G IKR++MGL+RF K PCGFCFVEY+ H+ ALD + ++ GT LDERIVR +LD G+   R+YGRG+SGGQVRDE R DYD GRGGYGR+   QS S+  AE
Sbjct:   13 RPSTYYDKSNKRNREEVQHREDPLKDATTLYVGNLSFYTTEEQIHELFSKCGEIKRLVMGLDRFAKTPCGFCFVEYYTHEDALDCMKYVGGTKLDERIVRTDLDPGFKEGRQYGRGKSGGQVRDEYREDYDAGRGGYGRS--LQSASEMGAE 162          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_016641353.1 (hypothetical protein SAPIO_CDS7720 [Scedosporium apiospermum] >KEZ41554.1 hypothetical protein SAPIO_CDS7720 [Scedosporium apiospermum])

HSP 1 Score: 172.2 bits (435), Expect = 1.500e-39
Identity = 79/131 (60.31%), Postives = 98/131 (74.81%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQSMSD 155
            Q   + L+    +Y+GNLSF TTE Q+++ FSKVG IKR++MGL+RFTK PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R DYDEGRGG GRA     M D
Sbjct:   46 QSPEDPLKDAATLYVGNLSFYTTEEQVYELFSKVGEIKRLVMGLDRFTKTPCGFCFVEYYTHQDALDCMKYIGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREDYDEGRGGLGRALQSDRMRD 176          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_002378107.1 (small subunit of nuclear cap-binding protein complex [Aspergillus flavus NRRL3357] >EED52943.1 small subunit of nuclear cap-binding protein complex [Aspergillus flavus NRRL3357] >KOC16124.1 small subunit of nuclear cap-binding protein [Aspergillus flavus AF70] >OOO07218.1 RNP-1 like RNA-binding protein [Aspergillus oryzae])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D  ++L+    +Y+GNLSF TTE QIH+ FSK G +KR++MGL+RFTK PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   38 EDPTDNLKNATTLYVGNLSFYTTEEQIHELFSKCGEVKRLVMGLDRFTKTPCGFCFVEYYTHQDALDCLKYVGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 160          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: XP_016612852.1 (hypothetical protein SPPG_00516 [Spizellomyces punctatus DAOM BR117] >KND04813.1 hypothetical protein SPPG_00516 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 0
Query:    1 MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYG 145
            M  L+ +  +P VY D K      D    +  +  +YIGNLSF TTE QI++ FSK G IKR+IMGL+RF K PCGFCFVEY+  Q A+D + F++GT LDERI+R +LD GY   R +GRG SGGQVRDE R DYDEGRGG+G
Sbjct:    1 MTSLVTSLGKPSVYKDNKYLGTDDDWEREIAASSTLYIGNLSFYTTEEQIYELFSKCGEIKRIIMGLDRFKKTPCGFCFVEYYNRQDAMDCMKFINGTKLDERIIRTDLDPGYKEGRNFGRGRSGGQVRDEHREDYDEGRGGWG 144          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: OQE20299.1 (hypothetical protein PENSTE_c013G01769 [Penicillium steckii])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 76/122 (62.30%), Postives = 96/122 (78.69%), Query Frame = 0
Query:   25 DQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            + +N L+G   +Y+GNLSF TTE QIH+ F+K G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   37 EPVNKLQGATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDALDCLKYVGGTKLDERIIRADLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 158          
BLAST of NO03G02800 vs. NCBI_GenBank
Match: PIG80837.1 (nuclear cap-binding protein subunit 2 [Aspergillus arachidicola])

HSP 1 Score: 171.8 bits (434), Expect = 1.900e-39
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 0
Query:   24 QDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRA 147
            +D  ++L+    +Y+GNLSF TTE QIH+ FSK G +KR++MGL+RFTK PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGRA
Sbjct:   38 EDPTDNLKNATTLYVGNLSFYTTEEQIHELFSKCGEVKRLVMGLDRFTKTPCGFCFVEYYTHQDALDCLKYVGGTKLDERIIRTDLDPGFEEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRA 160          
The following BLAST results are available for this feature:
BLAST of NO03G02800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CRG90515.17.700e-4156.74Nuclear cap-binding protein subunit 2 [Talaromyces... [more]
XP_020121117.11.300e-4057.78Nuclear cap-binding protein subunit 2 [Talaromyces... [more]
XP_024702424.11.300e-4055.03small subunit of nuclear cap-binding protein compl... [more]
OQD67325.16.600e-4063.41hypothetical protein PENDEC_c039G06918 [Penicilliu... [more]
EPS40288.11.100e-3955.92hypothetical protein H072_5905 [Dactylellina hapto... [more]
XP_016641353.11.500e-3960.31hypothetical protein SAPIO_CDS7720 [Scedosporium a... [more]
XP_002378107.11.900e-3961.79small subunit of nuclear cap-binding protein compl... [more]
XP_016612852.11.900e-3956.25hypothetical protein SPPG_00516 [Spizellomyces pun... [more]
OQE20299.11.900e-3962.30hypothetical protein PENSTE_c013G01769 [Penicilliu... [more]
PIG80837.11.900e-3961.79nuclear cap-binding protein subunit 2 [Aspergillus... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005614NSK005614Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02800.1NO03G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G02800.2NO03G02800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572255gene_1472Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g67gene914Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02800.1NO03G02800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G02800.2NO03G02800.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02800 ID=NO03G02800|Name=NO03G02800|organism=Nannochloropsis oceanica|type=gene|length=1190bp
ACAGCAAGCAAGTAAGCATGGCGGAACTTTTGGACACGGACCCGCAGCCG
TTGGTGTACTGGGATCGCAAGCAGTTCACGAACTTCCAGGACCAGgtaag
cttttgcggggagccattggacgtaagtgcgcggtgcctttcgacaacct
cctttgccctgaccagtcagaccaaagcattcccagcttggaagagtatt
attttcctctgcagtcgacaagcgccgtaacggagcccgtcggtcatgct
tgaggaggcagacagacggacacgacctagaaactttccgtcaaggccgc
cgcggatgctcacacaccaataacatgcacatgtgcacagATCAATTCAT
TACGGGGTACCAAGGTAGTATACATTGGAAATCTCAGCTTTCAAACTACT
GAGCCCCAGATCCATCAGGCTTTCTCCAAGgtacgaactgcgttttgtta
gctgaaactatcactctcactactcttacgccgttatcccaaacccctat
tggggtcaaatagGTTGGTTCCATCAAGCGCGTCATCATGGGCCTCAACC
GATTTACCAAGGAGCCCTGCGGCTTTTGCTTTGTCGAgtgcgttatgggt
ttgaggaaggatgagttggagatggccgggagtaaggtgtctgctgcaat
tccaatatccagcactctcactcccgcataatgtatttagctctgacctt
taccccatgtctatttaaacatttcatacctacacttggtcatgtttttg
cgcagGTACTTTGAACATCAGTGCGCGCTGGACGCCGTTGCCTTTTTGCA
CGGTACCACCTTAGACGAGCGCATCGTTCGCGTGGAGCTGGACTGGGGCT
ACCACCCGTCCAGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGTGCGC
GATGAAAAGCGCTTGGACTACGACGAAGGCCGTGGTGGCTATGGGCGGGC
GGCCATGTATCAATCGATGTCTGATCCCCTTGCCGAGGCACCCATTCCTC
CATCCATAGgtaaggttggagcacagaaagcggtgggatgacagctatca
caacacaccattcaaatgttctgtattacatacatacagTTTCTGGGAGA
CGGCCGCAGCGGCCTGGAGTGCCATAATATTTTGCATTGGGTGCGTCGGC
TGTGTGCGGGGGTGGTGTACAAATCGAGAAAGGAAATTCA
back to top

protein sequence of NO03G02800.1

>NO03G02800.1-protein ID=NO03G02800.1-protein|Name=NO03G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQI
HQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTL
DERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ
SMSDPLAEAPIPPSIVSGRRPQRPGVP*
back to top

protein sequence of NO03G02800.2

>NO03G02800.2-protein ID=NO03G02800.2-protein|Name=NO03G02800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQI
HQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTL
DERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ
SMSDPLAEAPIPPSIGKVGAQKAVG*
back to top
Synonyms
Publications