NO03G02800.2, NO03G02800.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02800.2
Unique NameNO03G02800.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length694
Alignment locationchr3:840179..841368 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:840179..841368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02800.2 vs.
Match: CRG90515.1 (Nuclear cap-binding protein subunit 2 [Talaromyces islandicus])

HSP 1 Score: 176.4 bits (446), Expect = 7.700e-41
Identity = 80/141 (56.74%), Postives = 104/141 (73.76%), Query Frame = 0 
Query:   14 YWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQIHQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTLDERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQSMSD 155
            Y DR +   F+D  ++L+    +Y+GNLSF TTE QIH+ F+K G IKR++MGL+RF K PCGFCFVEY+ HQ ALD + ++ GT LDERI+R +LD G+   R+YGRG+SGGQVRDE R +YD GRGGYGR+   Q M +
Sbjct:   27 YNDRDEADKFEDPNDNLKDATTLYVGNLSFYTTEEQIHELFAKCGEIKRLVMGLDRFQKTPCGFCFVEYYTHQDALDCLKYIGGTKLDERIIRTDLDPGFQEGRQYGRGKSGGQVRDEYREEYDPGRGGYGRSLEEQRMRE 167
The following BLAST results are available for this feature:
BLAST of NO03G02800.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CRG90515.17.700e-4156.74Nuclear cap-binding protein subunit 2 [Talaromyces... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02800NO03G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02800.2NO03G02800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02800.2.cds1NO03G02800.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02800.2.cds2NO03G02800.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02800.2.cds3NO03G02800.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02800.2.cds4NO03G02800.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02800.2 ID=NO03G02800.2|Name=NO03G02800.2|organism=Nannochloropsis oceanica|type=mRNA|length=694bp
ACAGCAAGCAAGTAAGCATGGCGGAACTTTTGGACACGGACCCGCAGCCG
TTGGTGTACTGGGATCGCAAGCAGTTCACGAACTTCCAGGACCAGATCAA
TTCATTACGGGGTACCAAGGTAGTATACATTGGAAATCTCAGCTTTCAAA
CTACTGAGCCCCAGATCCATCAGGCTTTCTCCAAGGTTGGTTCCATCAAG
CGCGTCATCATGGGCCTCAACCGATTTACCAAGGAGCCCTGCGGCTTTTG
CTTTGTCGAGTACTTTGAACATCAGTGCGCGCTGGACGCCGTTGCCTTTT
TGCACGGTACCACCTTAGACGAGCGCATCGTTCGCGTGGAGCTGGACTGG
GGCTACCACCCGTCCAGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGT
GCGCGATGAAAAGCGCTTGGACTACGACGAAGGCCGTGGTGGCTATGGGC
GGGCGGCCATGTATCAATCGATGTCTGATCCCCTTGCCGAGGCACCCATT
CCTCCATCCATAGGTAAGGTTGGAGCACAGAAAGCGGTGGGATGACAGCT
ATCACAACACACCATTCAAATGTTCTGTATTACATACATACAGTTTCTGG
GAGACGGCCGCAGCGGCCTGGAGTGCCATAATATTTTGCATTGGGTGCGT
CGGCTGTGTGCGGGGGTGGTGTACAAATCGAGAAAGGAAATTCA
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protein sequence of NO03G02800.2

>NO03G02800.2-protein ID=NO03G02800.2-protein|Name=NO03G02800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MAELLDTDPQPLVYWDRKQFTNFQDQINSLRGTKVVYIGNLSFQTTEPQI
HQAFSKVGSIKRVIMGLNRFTKEPCGFCFVEYFEHQCALDAVAFLHGTTL
DERIVRVELDWGYHPSRRYGRGESGGQVRDEKRLDYDEGRGGYGRAAMYQ
SMSDPLAEAPIPPSIGKVGAQKAVG*
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mRNA from alignment at chr3:840179..841368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02800.2 ID=NO03G02800.2|Name=NO03G02800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp|location=Sequence derived from alignment at chr3:840179..841368+ (Nannochloropsis oceanica)
ACAGCAAGCAAGTAAGCATGGCGGAACTTTTGGACACGGACCCGCAGCCG
TTGGTGTACTGGGATCGCAAGCAGTTCACGAACTTCCAGGACCAGGTAAG
CTTTTGCGGGGAGCCATTGGACGTAAGTGCGCGGTGCCTTTCGACAACCT
CCTTTGCCCTGACCAGTCAGACCAAAGCATTCCCAGCTTGGAAGAGTATT
ATTTTCCTCTGCAGTCGACAAGCGCCGTAACGGAGCCCGTCGGTCATGCT
TGAGGAGGCAGACAGACGGACACGACCTAGAAACTTTCCGTCAAGGCCGC
CGCGGATGCTCACACACCAATAACATGCACATGTGCACAGATCAATTCAT
TACGGGGTACCAAGGTAGTATACATTGGAAATCTCAGCTTTCAAACTACT
GAGCCCCAGATCCATCAGGCTTTCTCCAAGGTACGAACTGCGTTTTGTTA
GCTGAAACTATCACTCTCACTACTCTTACGCCGTTATCCCAAACCCCTAT
TGGGGTCAAATAGGTTGGTTCCATCAAGCGCGTCATCATGGGCCTCAACC
GATTTACCAAGGAGCCCTGCGGCTTTTGCTTTGTCGAGTGCGTTATGGGT
TTGAGGAAGGATGAGTTGGAGATGGCCGGGAGTAAGGTGTCTGCTGCAAT
TCCAATATCCAGCACTCTCACTCCCGCATAATGTATTTAGCTCTGACCTT
TACCCCATGTCTATTTAAACATTTCATACCTACACTTGGTCATGTTTTTG
CGCAGGTACTTTGAACATCAGTGCGCGCTGGACGCCGTTGCCTTTTTGCA
CGGTACCACCTTAGACGAGCGCATCGTTCGCGTGGAGCTGGACTGGGGCT
ACCACCCGTCCAGACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGTGCGC
GATGAAAAGCGCTTGGACTACGACGAAGGCCGTGGTGGCTATGGGCGGGC
GGCCATGTATCAATCGATGTCTGATCCCCTTGCCGAGGCACCCATTCCTC
CATCCATAGGTAAGGTTGGAGCACAGAAAGCGGTGGGATGACAGCTATCA
CAACACACCATTCAAATGTTCTGTATTACATACATACAGTTTCTGGGAGA
CGGCCGCAGCGGCCTGGAGTGCCATAATATTTTGCATTGGGTGCGTCGGC
TGTGTGCGGGGGTGGTGTACAAATCGAGAAAGGAAATTCA
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Coding sequence (CDS) from alignment at chr3:840179..841368+

>NO03G02800.2 ID=NO03G02800.2|Name=NO03G02800.2|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at chr3:840179..841368+ (Nannochloropsis oceanica)
ATGGCGGAACTTTTGGACACGGACCCGCAGCCGTTGGTGTACTGGGATCG
CAAGCAGTTCACGAACTTCCAGGACCAGATCAATTCATTACGGGGTACCA
AGGTAGTATACATTGGAAATCTCAGCTTTCAAACTACTGAGCCCCAGATC
CATCAGGCTTTCTCCAAGGTTGGTTCCATCAAGCGCGTCATCATGGGCCT
CAACCGATTTACCAAGGAGCCCTGCGGCTTTTGCTTTGTCGAGTACTTTG
AACATCAGTGCGCGCTGGACGCCGTTGCCTTTTTGCACGGTACCACCTTA
GACGAGCGCATCGTTCGCGTGGAGCTGGACTGGGGCTACCACCCGTCCAG
ACGGTACGGTCGCGGGGAAAGCGGTGGTCAGGTGCGCGATGAAAAGCGCT
TGGACTACGACGAAGGCCGTGGTGGCTATGGGCGGGCGGCCATGTATCAA
TCGATGTCTGATCCCCTTGCCGAGGCACCCATTCCTCCATCCATAGGTAA
GGTTGGAGCACAGAAAGCGGTGGGATGA
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Synonyms
Publications