NO03G02670, NO03G02670 (gene) Nannochloropsis oceanica

Overview
NameNO03G02670
Unique NameNO03G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1628
Alignment locationchr3:763319..764946 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:763319..764946 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
Homology
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BLAST of NO03G02670 vs. NCBI_GenBank
Match: EWM29719.1 (hypothetical protein Naga_100124g13 [Nannochloropsis gaditana])

HSP 1 Score: 244.6 bits (623), Expect = 2.400e-61
Identity = 115/148 (77.70%), Postives = 136/148 (91.89%), Query Frame = 0 
Query:   33 KEYIVNISKPLGVAVEEVGDGSGIVYVVEAGDKAQAAGMEVGDVIVGCSFIFDDSYLVNVTGKGVEKVESLIRSRGPDYVCLRVKKGCEYHLLDKEDLDAMRREYDEEATLEPEEKEARWIKLAQSIFIDDLGWRPEGEEGEEEEESW 181
            +EY+VN+SKPLGVAVEE GDGSG+VYVVEA +KAQAAG+EVGDVIVGCSFIFDDSYLVNVTGKGVE+VESLIRSRGPDYVCLR++KGC+YHLL++ DLDA R  YD+EATLEPEE+EARWI+ A+SIFID+ GW+    EG+EE+E+W
Sbjct:   99 EEYVVNVSKPLGVAVEEAGDGSGMVYVVEANEKAQAAGVEVGDVIVGCSFIFDDSYLVNVTGKGVERVESLIRSRGPDYVCLRLRKGCDYHLLERGDLDARRETYDDEATLEPEEQEARWIRRAESIFIDEWGWQTPEGEGDEEQENW 246
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BLAST of NO03G02670 vs. NCBI_GenBank
Match: CBJ31443.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6 bits (187), Expect = 8.600e-11
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = 0 
Query:   36 IVNISKPLGVAVEEVGDGSGIVYVVEAGDKAQAAGMEVGDVIVGCSFIFDDSYLVNVTGKGVEKVESLIRSRGPDYVCLRVKKG 120
            I N++KPLG+ +EE  D + +VY+   GDKA+AAG++VGDV+ G S +F D  + +V  K +E++ SL+R R   +  +RV++G
Sbjct:  202 IANMTKPLGITIEESTDKAQLVYLTSVGDKAEAAGLQVGDVLTGVSAVFGDE-VWSVKDKHIEEIRSLVRCRPEPFSLIRVERG 284
The following BLAST results are available for this feature:
BLAST of NO03G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29719.12.400e-6177.70hypothetical protein Naga_100124g13 [Nannochlorops... [more]
CBJ31443.18.600e-1142.86conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005629NSK005629Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02670.1NO03G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G02670.2NO03G02670.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|6612gene_1457Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100124g13gene928Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02670.1NO03G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G02670.2NO03G02670.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02670 ID=NO03G02670|Name=NO03G02670|organism=Nannochloropsis oceanica|type=gene|length=1628bp
CACACAAGCCCCTTCTGCTCCTGTGTGATGGGGACAAAGGACAAGTCGAG
AACGGGTGAGTTTGGAGCAAAGGAGTGTGGCAGAAGGCAGAAGGATAAGA
GGCAAGTTGAAGAGACCGCTGCAGCAGCGTCGGTTTCTGGGGGCCACCAC
GGCACCGGCGTACGCAAGGAACAGGCGGTAAACAAGGCATCCTCATTCTT
CCCCGTTGCCTCAGGGATTTATGAAAGCGACGACAAGCTGCCTGTTTATG
AGGGGTGGCAGTGACGCTGAATTGTATTCGGAGGTAGAAAAGAAATAACC
TGGCATAGATGGCTGCTTGAATTCCCACTGCTCCCTCCACCAGGAGTACG
TCAAACACCTTTTTCGAAGCTTCCAAGTCCAACCCGGCTGCCGCGTGCCT
CTTTCCACTACACAGCGTCGATGTCCTTCCTCTCAACCACAACACACTCG
CCACAGGCATGCCTCGCTCCTTTTCCTGTCGCTCTCTTGTCGGTCTGAGT
CTCATCATCTGCACGACGCTGGAGCAGGCCGCCCAGGCCTTCGTCATCGG
TAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCATTACGCCAGGTCCCA
GCCGATGGCAGCGCCAGGGTATCCGCACCATTATCTACTCATCACCGTCC
AATAAGTTTTACGGCAACTCGTTCCAACgtaagtctgaattcttccgagc
ggacttatgccacgcctgtgtacgcagtggcctgagtattatttagccag
ttgaccctcgtgtcgtccttgtcaacaaacgaaacctgccttacaaattc
atgctttcgatcgcctgtgatcaagattttcattcaggtctctctctttc
gcaaaaccctttgaccagCACTAGGCGCCCCGCCACCACAGGCCGACGAA
CCGCAAGGAAGCTTTTCGCTAGGTTTGCAGTCCGAGACAGCAGGAACACA
ATTTGAGGTACGCTCTATCTCCGACTTGAGACGTTTATCTCATGTTTCTC
TTCCTTCATACGACCCTATGCCTAAATCGAAACCCAGATTGGCGTTCCTC
CAACGCACAATTTTTTTTTTTTCCCTCCCTTCGTAACAAGGAGTACATCG
TCAACATCAGCAAGCCCCTAGGTGTCGCCGTGGAAGAGGTGGGAGACGGC
TCGGGCATAGTTTATGTTGTAGAAGCAGGAGACAAGGCCCAAGCAGCGGG
GATGGAAGTGGGGGACGTGATTGTAGGATGCTCCTTCATTTTCGATGATT
CATATTTGGTCAACGTGACGGGAAAGGGAGTGGAAAAGGTGGAATCGCTC
ATTCGGTCCCGTGGGCCGGATTACGTGTGTTTGCGCGTGAAGAAGGGATG
TGAGTACCATCTGTTGGACAAGGAGGATCTCGACGCCATGCGGCGGGAAT
ATGATGAGGAAGCCACCTTGGAGCCGGAGGAGAAAGAGGCACGATGGATT
AAGTTGGCGCAGAGTATTTTTATCGATGATTTGGGCTGGAGACCTGAGGG
CGAGGAAGGAGAAGAGGAAGAGGAGTCATGGTGAAGGAAAAGAGGGGCGA
AAAGCACGCGCCACTCGCACATAAGTAAGTAAGACAGCGTGACCGCGAAA
ATGAAATAATCTGACATCGTGATCATGA
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protein sequence of NO03G02670.1

>NO03G02670.1-protein ID=NO03G02670.1-protein|Name=NO03G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MPRSFSCRSLVGLSLIICTTLEQAAQAFVIGSSSSSSSSSSSITPGPSRW
QRQGIRTIIYSSPSNKFYGNSFQPLGAPPPQADEPQGSFSLGLQSETAGT
QFEEYIVNISKPLGVAVEEVGDGSGIVYVVEAGDKAQAAGMEVGDVIVGC
SFIFDDSYLVNVTGKGVEKVESLIRSRGPDYVCLRVKKGCEYHLLDKEDL
DAMRREYDEEATLEPEEKEARWIKLAQSIFIDDLGWRPEGEEGEEEEESW
*
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protein sequence of NO03G02670.2

>NO03G02670.2-protein ID=NO03G02670.2-protein|Name=NO03G02670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MFLFLHTTLCLNRNPDWRSSNAQFFFFPSLRNKEYIVNISKPLGVAVEEV
GDGSGIVYVVEAGDKAQAAGMEVGDVIVGCSFIFDDSYLVNVTGKGVEKV
ESLIRSRGPDYVCLRVKKGCEYHLLDKEDLDAMRREYDEEATLEPEEKEA
RWIKLAQSIFIDDLGWRPEGEEGEEEEESW*
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Synonyms
Publications