NO03G02570, NO03G02570 (gene) Nannochloropsis oceanica

Overview
NameNO03G02570
Unique NameNO03G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1434
Alignment locationchr3:741743..743176 +

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Properties
Property NameValue
DescriptionInositol phosphoceramide mannosyltransferase 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:741743..743176 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR007577GlycoTrfase_DXD_sugar-bd_CS
Homology
BLAST of NO03G02570 vs. NCBI_GenBank
Match: EKE08478.1 (hypothetical protein ACD_17C00148G0003, partial [uncultured bacterium])

HSP 1 Score: 118.6 bits (296), Expect = 4.200e-23
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 0
Query:   84 IPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLD-LHSEAGPTFYAGFSNTGTVE----LNNGLIGALPQHPILSSLIERI 221
            IPK +H IWLG   P+R++A + +W K HP    W + LWTD ++        NK  +  A N G+KSDILRYE+L ++GG YVD D EC++  D LH      FY G       +    + N LIG++P HPIL + + RI
Sbjct:   75 IPKKIHQIWLGGTLPDRYRALQTSWQKHHPE---WEYHLWTDADVETF--PFSNKERFEKAMNVGEKSDILRYEILSQFGGLYVDTDFECIQPFDSLHFLC--DFYVGLETPHAKDTEAAIGNALIGSIPHHPILQACLHRI 209          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: XP_005836918.1 (hypothetical protein GUITHDRAFT_67557, partial [Guillardia theta CCMP2712] >EKX49938.1 hypothetical protein GUITHDRAFT_67557, partial [Guillardia theta CCMP2712])

HSP 1 Score: 118.6 bits (296), Expect = 4.200e-23
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 0
Query:   91 IWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLD-LHSEAGPTFYAGFSNTGTVELNNGLIGA 207
            IWLG   PE+F A+R TW+  HP    W H LWT++++  L  ++ N  AY  APN G KSD+LR E++ R+GG Y+D+D EC++S D LH      FYAG SN G +E++NG+  A
Sbjct:    1 IWLGGNIPEQFLAWRNTWIDLHPE---WQHILWTEEDVEEL--AMLNPEAYKNAPNLGAKSDLLRLEVVWRFGGLYIDIDFECLKSFDVLHDHL--DFYAGLSNVGAMEISNGIFAA 110          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: OGN56246.1 (hypothetical protein A2796_04890 [Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39] >OGN57080.1 hypothetical protein A3C42_06945 [Chlamydiae bacterium RIFCSPHIGHO2_02_FULL_45_9] >OGN60718.1 hypothetical protein A3D96_02200 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_44_59] >OGN66978.1 hypothetical protein A2978_02430 [Chlamydiae bacterium RIFCSPLOWO2_01_FULL_44_52] >OGN67529.1 hypothetical protein A3I67_03645 [Chlamydiae bacterium RIFCSPLOWO2_02_FULL_45_22] >OGN71232.1 hypothetical protein A3F79_02670 [Chlamydiae bacterium RIFCSPLOWO2_12_FULL_45_20])

HSP 1 Score: 118.6 bits (296), Expect = 4.200e-23
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 0
Query:   84 IPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLD-LHSEAGPTFYAGFSNTGTVE----LNNGLIGALPQHPILSSLIERI 221
            IPK +H IWLG   P+R++A + +W K HP    W + LWTD ++        NK  +  A N G+KSDILRYE+L ++GG YVD D EC++  D LH      FY G       +    + N LIG++P HPIL + + RI
Sbjct:   75 IPKKIHQIWLGGTLPDRYRALQTSWQKHHPE---WEYHLWTDADVETF--PFSNKERFEKAMNVGEKSDILRYEILSQFGGLYVDTDFECIQPFDSLHFLC--DFYVGLETPHAKDTEAAIGNALIGSIPHHPILQACLHRI 209          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: WP_098038654.1 (hypothetical protein [Estrella lausannensis] >CRX38792.1 Conserved putative secreted protein [Estrella lausannensis])

HSP 1 Score: 117.1 bits (292), Expect = 1.200e-22
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 0
Query:   61 LTEYKYTLRILQGPPASSPNYACIPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECV--RSLDLHSEAGPTFYAGFSN-TGTVELN--NGLIGALPQHPILSSLIERI 221
            LTE  Y   +    PA S     IPK++H IWLGSP P++F+   KTW+K H    GW + LWT+  +  +  +L N   Y    N G KSDILRYE+L+++GG YVD D EC      D  +E    F+AG     G  +L+  N LIG+ P HP+L  +++ +
Sbjct:   65 LTETLYNNNLTPIYPALS-----IPKVVHQIWLGSPVPKKFEKIMKTWMKWH----GWEYKLWTEAEVAKI--TLVNPGIYQKVKNLGAKSDILRYEILYQFGGVYVDTDFECFCPAFFDWAAEQ-YDFFAGIETLKGCPKLHICNALIGSKPGHPLLQRMLQEL 217          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: EKD49037.1 (hypothetical protein ACD_64C00023G0001 [uncultured bacterium])

HSP 1 Score: 115.9 bits (289), Expect = 2.700e-22
Identity = 67/168 (39.88%), Postives = 92/168 (54.76%), Query Frame = 0
Query:   56 FLHQALTEY-KYTLRILQGPPASSPNYACIPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFS--NTGTVELNNGLIGALPQHPILSSLIERI 221
            FL+QA   Y +Y   +LQ  P   P    IPKI+H IW+G P PE F+ + +TW + HP    W + LW DD  +  L  L N+  Y  + + G KSD+L++E+++RYGG Y DVD EC+R LD  +     FY      +   V+L   L  A P HP+L   IE I
Sbjct:   62 FLNQARDLYDRYNPSVLQ--PHEQP---IIPKIIHQIWIGGPLPEVFKKYMQTWQELHP---DWHYVLW-DDAKVKELFPLYNQRFYDESESMGVKSDLLKWEIVYRYGGVYADVDFECLRPLDQLNHT-YDFYTALQPFDAFFVQLGAALFAAYPGHPVLRHCIETI 219          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: OGH95988.1 (hypothetical protein A2X43_03580 [Candidatus Margulisbacteria bacterium GWD2_39_127] >OGI02506.1 hypothetical protein A2X42_07465 [Candidatus Margulisbacteria bacterium GWF2_38_17] >OGI10999.1 hypothetical protein A2X41_01990 [Candidatus Margulisbacteria bacterium GWE2_39_32])

HSP 1 Score: 113.2 bits (282), Expect = 1.800e-21
Identity = 59/168 (35.12%), Postives = 89/168 (52.98%), Query Frame = 0
Query:   57 LHQALTEYKYTLRILQGPPASSPNYACIPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLD-LHSEAGPTFYAGFSNTGTVELNNGLIGALPQHPILSSLIERIHTQ 224
            L + L    YT +++ G          IPK +H IWLG          +++W + HP    W ++LWTD  +  L   + N+  +    NYG KSDILRYE+L+++GG YVD D EC    D +H +    F+AG   +    LNN LIG++  HP+L   I+ ++T+
Sbjct:   33 LLEQLFNANYTNKVINGQ---------IPKKIHQIWLGXXXXXXXXXXQESWKRFHP---DWEYYLWTDKEVKKL--EMINRELFSRTSNYGAKSDILRYEILNQFGGLYVDTDFECFHPFDTIHEQC--HFFAGLVYSEAPLLNNALIGSVAGHPVLKLCIDSLNTR 184          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: KKP29179.1 (hypothetical protein UR12_C0013G0009 [candidate division TM6 bacterium GW2011_GWF2_30_66])

HSP 1 Score: 112.8 bits (281), Expect = 2.300e-21
Identity = 60/180 (33.33%), Postives = 91/180 (50.56%), Query Frame = 0
Query:   79 PNYAC-IPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDD--------------------------NIIP-----LLD----SLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFS--NTGTVELNNGLIGALPQHPILSSLIERI 221
            P   C +PKILH+IWLG   PE++  +  +W K  P    W++  W D+                          N +P     ++D    +  NK  +  + NYGQ+SDIL++E L+R+GG Y+DVD EC+  LD+ +     FYAG    +TG ++L + ++ A P HPIL   +E I
Sbjct:   90 PQEICKVPKILHYIWLGKKLPEQYMQYLNSWFKYQP---DWTYVFWVDNSKNYDLGELXXXXXXXXXXYLEASNINNLPEQKKIVIDVKNINFDNKKFFYESRNYGQRSDILKWEALYRFGGVYIDVDFECINPLDILNHT-YDFYAGIQPLDTGIIQLGSAIVAACPHHPILKRCVETI 265          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: EKD49038.1 (surface protein SUR1 [uncultured bacterium])

HSP 1 Score: 112.1 bits (279), Expect = 3.900e-21
Identity = 61/171 (35.67%), Postives = 87/171 (50.88%), Query Frame = 0
Query:   82 ACIPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTD-----DNIIPLLDSLR-------------------------NKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFS--NTGTVELNNGLIGALPQHPILSSLIERI 221
            A IPK++H +WLG   P  F+++  +W K HP    W+   WTD     D    +L S                           NK  Y AA NYG+KSDIL++E+++R+GG YVD D EC++ LD ++     FY G    +T  V+L   L GA+P HP+L + +E I
Sbjct:   83 ARIPKLIHVMWLGGKLPHEFESYVASWRKYHP---DWTILFWTDNASNYDRGTEVLQSFSELEARLQSGKRGDQLVIDARNLAYDNKQFYDAAINYGEKSDILKWEIVYRFGGVYVDTDFECLQPLDPYNHTF-DFYTGMQPLDTNMVQLGAALYGAIPHHPVLKACVEMI 249          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: WP_021685995.1 (hypothetical protein [Treponema lecithinolyticum] >ERJ94489.1 hypothetical protein HMPREF9193_00022 [Treponema lecithinolyticum ATCC 700332])

HSP 1 Score: 112.1 bits (279), Expect = 3.900e-21
Identity = 53/137 (38.69%), Postives = 81/137 (59.12%), Query Frame = 0
Query:   84 IPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELNNGLIGALPQHPILSSLIERI 221
            IP  +H IW+GS  PE++  +  +W K +P    W + LW + +I+ LLD    KS ++ + N+G KSDI RY +L + GG Y D D EC++ L+  +E   T +AG   +   E+ NG+IG  P HP LS ++E +
Sbjct:   54 IPHKIHQIWIGSDLPEKYYDWCNSWKKLNPE---WEYKLWQEQDILDLLDG-PIKSIFLKSKNFGAKSDIARYVILQKEGGVYCDTDFECIKPLEKITET-CTMFAGIIFSEKPEIANGIIGTTPAHPFLSVILEEL 185          
BLAST of NO03G02570 vs. NCBI_GenBank
Match: WP_030672474.1 (hypothetical protein [Streptomyces sp. NRRL B-1347])

HSP 1 Score: 110.5 bits (275), Expect = 1.100e-20
Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = 0
Query:   82 ACIPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDS-LRNKSA-YIAAPNYGQ-KSDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELNNGLIGALPQHPILSSLI 218
            A IP+++H IW+GSP P RF+A+R TW   HP    W   +WTDDN+ P+ +  L +++A Y  A   GQ ++D+LRYELL +YGG YVD D EC++ +    + G   +A +   G   + NGL+GA   H  +  LI
Sbjct:    3 AAIPRLIHWIWIGSPVPARFEAYRDTWASAHP---DWEMRVWTDDNLPPMYNQHLYDQAADYAPASMVGQFRADVLRYELLWQYGGVYVDADFECLQPITPLLD-GIDAFAAWETDGR-RIANGLMGAARSHRFIGRLI 136          
The following BLAST results are available for this feature:
BLAST of NO03G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EKE08478.14.200e-2341.55hypothetical protein ACD_17C00148G0003, partial [u... [more]
XP_005836918.14.200e-2347.01hypothetical protein GUITHDRAFT_67557, partial [Gu... [more]
OGN56246.14.200e-2341.55hypothetical protein A2796_04890 [Chlamydiae bacte... [more]
WP_098038654.11.200e-2240.00hypothetical protein [Estrella lausannensis] >CRX3... [more]
EKD49037.12.700e-2239.88hypothetical protein ACD_64C00023G0001 [uncultured... [more]
OGH95988.11.800e-2135.12hypothetical protein A2X43_03580 [Candidatus Margu... [more]
KKP29179.12.300e-2133.33hypothetical protein UR12_C0013G0009 [candidate di... [more]
EKD49038.13.900e-2135.67surface protein SUR1 [uncultured bacterium][more]
WP_021685995.13.900e-2138.69hypothetical protein [Treponema lecithinolyticum] ... [more]
WP_030672474.11.100e-2041.73hypothetical protein [Streptomyces sp. NRRL B-1347... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005642NSK005642Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02570.1NO03G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572107gene_1446Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100114g18gene937Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02570.1NO03G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02570 ID=NO03G02570|Name=NO03G02570|organism=Nannochloropsis oceanica|type=gene|length=1434bp
CAGCTTGCATACCAAACATGGAGGCCTCAACACCGGTGGCCAGTTTGCTG
GGGGACTGCGACCTCCAAGATTATGTCCATTTTTTCCTGGAGGACGACGC
GAGGCAGAAGCCTGTCATTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTG
CGTGCTGGCTGGACATCGCAAAAGAAGCAACATTCCTCCATCAAGCCTTG
ACCGAGTACAAATACACCCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTC
ACCCAATTATGCCTGTATCCCTAAAATCCTTCACCACATTTGGCTGGGCT
CTCCCTTCCCCGAACGCTTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAA
CACCCAACAGAAGACGgtaaatggcctatgtatcccatatcgggctttct
ttttacatgtggcttacattcttttttttttcgcacttgaaaagGTTGGA
GCCACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACAGCCTG
CGGAACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAATCAGA
TATTCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGTAGACG
TGGACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAGGCCCG
ACCTTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAACAACGG
GCTCATCGGgtgggtgcgttcatcaaatgacttttgaaaaaccaattgac
ggattggtccctttttttcacgaaaagtttcgcccgtctaacatctcttg
ttctcaattcacagAGCCCTCCCGCAGCACCCTATCTTATCCAGCTTGAT
CGAGCGCATCCACACCCAGCATTTCTCGCTTCCTCCTCGTCCCCCCCTTC
TTCCTTCTGAGCCATCCACACTATCATCATCACCATCAACTTCACCATTA
CCATCAAAAGTACCCTCCAACTTTGCTGCAATTTTAGGATTTCTCGGCCA
GGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGAAGCGGGAGTAAGGAATG
TATCGTCCATGGGCACGATTGAGGCCACAGGACCAGGTCTCTTCACGCGG
GTGGTAGCTGAGCACCTGCAACTGCTGGAGGAGCAGTCAGTGCACGCGGG
GACGAGAGATAAGATACTACTGGCCCCACCTGCTTGGTTCTATCCCATGC
CAAATCACGTAGCACATGTGTCCGTACCCTCCTCCTCGCCCTCTTCTTCG
TCCTCGAATGTTTATGTACTACCAGCCGTGACATACACTGTCCACCACTG
GGCCCGCTCCTGGCAGCAACAAGAGCAGCACTTGCACTACCCGAGTAAAT
AATCATACACATGCCAGGTTGCAGTTGAAGTAATGGAGACAAAACAAAGC
TAGCCTCTACTTCTCAACTTCTCGCTCATGGGTT
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protein sequence of NO03G02570.1

>NO03G02570.1-protein ID=NO03G02570.1-protein|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MEASTPVASLLGDCDLQDYVHFFLEDDARQKPVIAEEPSSRRCRACWLDI
AKEATFLHQALTEYKYTLRILQGPPASSPNYACIPKILHHIWLGSPFPER
FQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQK
SDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELN
NGLIGALPQHPILSSLIERIHTQHFSLPPRPPLLPSEPSTLSSSPSTSPL
PSKVPSNFAAILGFLGQGEAAAVKQAVEAGVRNVSSMGTIEATGPGLFTR
VVAEHLQLLEEQSVHAGTRDKILLAPPAWFYPMPNHVAHVSVPSSSPSSS
SSNVYVLPAVTYTVHHWARSWQQQEQHLHYPSK*
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Synonyms
Publications