NO03G02570.1, NO03G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02570.1
Unique NameNO03G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1251
Alignment locationchr3:741743..743176 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:741743..743176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02570.1 vs.
Match: XP_005830157.1 (hypothetical protein GUITHDRAFT_110904 [Guillardia theta CCMP2712]; EKX43177.1 hypothetical protein GUITHDRAFT_110904 [Guillardia theta CCMP2712])

HSP 1 Score: 155.2 bits (391), Expect = 4.000e-34
Identity = 94/256 (36.72%), Postives = 134/256 (52.34%), Query Frame = 0 
Query:   84 IPKILHHIWLGSPFPERFQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDS--LRNKSAYIAAPNYGQKSDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELNNGLIGALPQHPILSSLIERIHTQHFSLPPRPPLLPSEPSTLSSSPSTSPLPSKVPSNFAAILGFLGQGEAAAVKQAVEAGVRNVSSMGTIEATGPGLFTRVVAEHLQLLEEQSVHAGTRD-KILLAPPAWFYPMPNH 337
            IP+I+HHIW+G   P +FQ+ R  W+  HP ++GW H+LW D++I     S  + +  +Y +A NYG+KSDILR E+L+R+GG YVDVD +C+RS   H         G SN G +E+NNGLIG+ PQHP+L  L               PL    PST             +PS+   +L  L  G     K     G + V+S      TGPG FTR++    +  E+     G  D + ++ P  +FY +PN+
Sbjct:   89 IPRIIHHIWIGGKLPGKFQSLRDEWILLHPAQEGWKHYLWDDESIAQEFSSNPMDSAGSYASASNYGEKSDILRLEVLNRFGGVYVDVDFKCIRS--FHD------ILGLSNVGHIEVNNGLIGSAPQHPLLKVL---------------PLWHLVPST------------SMPSD--RLLCALSSGNETICK----TGTKFVNSFKLDRQTGPGYFTRMMISAWK--EKLHKPHGVDDLEWIVLPVRYFYSLPNN 301
The following BLAST results are available for this feature:
BLAST of NO03G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005830157.14.000e-3436.72hypothetical protein GUITHDRAFT_110904 [Guillardia... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02570NO03G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02570.1NO03G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02570.1.cds1NO03G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02570.1.cds2NO03G02570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G02570.1.cds3NO03G02570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02570.1 ID=NO03G02570.1|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
CAGCTTGCATACCAAACATGGAGGCCTCAACACCGGTGGCCAGTTTGCTG
GGGGACTGCGACCTCCAAGATTATGTCCATTTTTTCCTGGAGGACGACGC
GAGGCAGAAGCCTGTCATTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTG
CGTGCTGGCTGGACATCGCAAAAGAAGCAACATTCCTCCATCAAGCCTTG
ACCGAGTACAAATACACCCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTC
ACCCAATTATGCCTGTATCCCTAAAATCCTTCACCACATTTGGCTGGGCT
CTCCCTTCCCCGAACGCTTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAA
CACCCAACAGAAGACGGTTGGAGCCACTTCCTTTGGACGGATGATAACAT
AATTCCCCTCCTGGACAGCCTGCGGAACAAGTCTGCTTACATTGCGGCGC
CCAACTACGGACAAAAATCAGATATTCTGCGGTATGAACTATTGCATCGA
TACGGAGGAACTTACGTAGACGTGGACATGGAGTGTGTGCGGTCGTTGGA
CCTCCACTCGGAGGCAGGCCCGACCTTCTACGCGGGTTTCTCCAACACGG
GCACAGTCGAGCTGAACAACGGGCTCATCGGAGCCCTCCCGCAGCACCCT
ATCTTATCCAGCTTGATCGAGCGCATCCACACCCAGCATTTCTCGCTTCC
TCCTCGTCCCCCCCTTCTTCCTTCTGAGCCATCCACACTATCATCATCAC
CATCAACTTCACCATTACCATCAAAAGTACCCTCCAACTTTGCTGCAATT
TTAGGATTTCTCGGCCAGGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGA
AGCGGGAGTAAGGAATGTATCGTCCATGGGCACGATTGAGGCCACAGGAC
CAGGTCTCTTCACGCGGGTGGTAGCTGAGCACCTGCAACTGCTGGAGGAG
CAGTCAGTGCACGCGGGGACGAGAGATAAGATACTACTGGCCCCACCTGC
TTGGTTCTATCCCATGCCAAATCACGTAGCACATGTGTCCGTACCCTCCT
CCTCGCCCTCTTCTTCGTCCTCGAATGTTTATGTACTACCAGCCGTGACA
TACACTGTCCACCACTGGGCCCGCTCCTGGCAGCAACAAGAGCAGCACTT
GCACTACCCGAGTAAATAATCATACACATGCCAGGTTGCAGTTGAAGTAA
TGGAGACAAAACAAAGCTAGCCTCTACTTCTCAACTTCTCGCTCATGGGT
T
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protein sequence of NO03G02570.1

>NO03G02570.1-protein ID=NO03G02570.1-protein|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MEASTPVASLLGDCDLQDYVHFFLEDDARQKPVIAEEPSSRRCRACWLDI
AKEATFLHQALTEYKYTLRILQGPPASSPNYACIPKILHHIWLGSPFPER
FQAFRKTWLKQHPTEDGWSHFLWTDDNIIPLLDSLRNKSAYIAAPNYGQK
SDILRYELLHRYGGTYVDVDMECVRSLDLHSEAGPTFYAGFSNTGTVELN
NGLIGALPQHPILSSLIERIHTQHFSLPPRPPLLPSEPSTLSSSPSTSPL
PSKVPSNFAAILGFLGQGEAAAVKQAVEAGVRNVSSMGTIEATGPGLFTR
VVAEHLQLLEEQSVHAGTRDKILLAPPAWFYPMPNHVAHVSVPSSSPSSS
SSNVYVLPAVTYTVHHWARSWQQQEQHLHYPSK*
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mRNA from alignment at chr3:741743..743176+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02570.1 ID=NO03G02570.1|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at chr3:741743..743176+ (Nannochloropsis oceanica)
CAGCTTGCATACCAAACATGGAGGCCTCAACACCGGTGGCCAGTTTGCTG
GGGGACTGCGACCTCCAAGATTATGTCCATTTTTTCCTGGAGGACGACGC
GAGGCAGAAGCCTGTCATTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTG
CGTGCTGGCTGGACATCGCAAAAGAAGCAACATTCCTCCATCAAGCCTTG
ACCGAGTACAAATACACCCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTC
ACCCAATTATGCCTGTATCCCTAAAATCCTTCACCACATTTGGCTGGGCT
CTCCCTTCCCCGAACGCTTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAA
CACCCAACAGAAGACGGTAAATGGCCTATGTATCCCATATCGGGCTTTCT
TTTTACATGTGGCTTACATTCTTTTTTTTTTCGCACTTGAAAAGGTTGGA
GCCACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACAGCCTG
CGGAACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAATCAGA
TATTCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGTAGACG
TGGACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAGGCCCG
ACCTTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAACAACGG
GCTCATCGGGTGGGTGCGTTCATCAAATGACTTTTGAAAAACCAATTGAC
GGATTGGTCCCTTTTTTTCACGAAAAGTTTCGCCCGTCTAACATCTCTTG
TTCTCAATTCACAGAGCCCTCCCGCAGCACCCTATCTTATCCAGCTTGAT
CGAGCGCATCCACACCCAGCATTTCTCGCTTCCTCCTCGTCCCCCCCTTC
TTCCTTCTGAGCCATCCACACTATCATCATCACCATCAACTTCACCATTA
CCATCAAAAGTACCCTCCAACTTTGCTGCAATTTTAGGATTTCTCGGCCA
GGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGAAGCGGGAGTAAGGAATG
TATCGTCCATGGGCACGATTGAGGCCACAGGACCAGGTCTCTTCACGCGG
GTGGTAGCTGAGCACCTGCAACTGCTGGAGGAGCAGTCAGTGCACGCGGG
GACGAGAGATAAGATACTACTGGCCCCACCTGCTTGGTTCTATCCCATGC
CAAATCACGTAGCACATGTGTCCGTACCCTCCTCCTCGCCCTCTTCTTCG
TCCTCGAATGTTTATGTACTACCAGCCGTGACATACACTGTCCACCACTG
GGCCCGCTCCTGGCAGCAACAAGAGCAGCACTTGCACTACCCGAGTAAAT
AATCATACACATGCCAGGTTGCAGTTGAAGTAATGGAGACAAAACAAAGC
TAGCCTCTACTTCTCAACTTCTCGCTCATGGGTT
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Coding sequence (CDS) from alignment at chr3:741743..743176+

>NO03G02570.1 ID=NO03G02570.1|Name=NO03G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr3:741743..743176+ (Nannochloropsis oceanica)
ATGGAGGCCTCAACACCGGTGGCCAGTTTGCTGGGGGACTGCGACCTCCA
AGATTATGTCCATTTTTTCCTGGAGGACGACGCGAGGCAGAAGCCTGTCA
TTGCTGAGGAGCCGTCCTCGCGCCGCTGCCGTGCGTGCTGGCTGGACATC
GCAAAAGAAGCAACATTCCTCCATCAAGCCTTGACCGAGTACAAATACAC
CCTTCGCATCCTGCAGGGGCCGCCGGCTTCGTCACCCAATTATGCCTGTA
TCCCTAAAATCCTTCACCACATTTGGCTGGGCTCTCCCTTCCCCGAACGC
TTCCAAGCCTTCCGTAAAACCTGGCTGAAGCAACACCCAACAGAAGACGG
TTGGAGCCACTTCCTTTGGACGGATGATAACATAATTCCCCTCCTGGACA
GCCTGCGGAACAAGTCTGCTTACATTGCGGCGCCCAACTACGGACAAAAA
TCAGATATTCTGCGGTATGAACTATTGCATCGATACGGAGGAACTTACGT
AGACGTGGACATGGAGTGTGTGCGGTCGTTGGACCTCCACTCGGAGGCAG
GCCCGACCTTCTACGCGGGTTTCTCCAACACGGGCACAGTCGAGCTGAAC
AACGGGCTCATCGGAGCCCTCCCGCAGCACCCTATCTTATCCAGCTTGAT
CGAGCGCATCCACACCCAGCATTTCTCGCTTCCTCCTCGTCCCCCCCTTC
TTCCTTCTGAGCCATCCACACTATCATCATCACCATCAACTTCACCATTA
CCATCAAAAGTACCCTCCAACTTTGCTGCAATTTTAGGATTTCTCGGCCA
GGGAGAAGCGGCAGCGGTAAAGCAAGCCGTGGAAGCGGGAGTAAGGAATG
TATCGTCCATGGGCACGATTGAGGCCACAGGACCAGGTCTCTTCACGCGG
GTGGTAGCTGAGCACCTGCAACTGCTGGAGGAGCAGTCAGTGCACGCGGG
GACGAGAGATAAGATACTACTGGCCCCACCTGCTTGGTTCTATCCCATGC
CAAATCACGTAGCACATGTGTCCGTACCCTCCTCCTCGCCCTCTTCTTCG
TCCTCGAATGTTTATGTACTACCAGCCGTGACATACACTGTCCACCACTG
GGCCCGCTCCTGGCAGCAACAAGAGCAGCACTTGCACTACCCGAGTAAAT
AA
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Synonyms
Publications