NO03G02400, NO03G02400 (gene) Nannochloropsis oceanica

Overview
NameNO03G02400
Unique NameNO03G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr3:690290..691711 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:690290..691711 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
Vocabulary: Biological Process
TermDefinition
GO:0046907intracellular transport
Vocabulary: INTERPRO
TermDefinition
IPR015007NUP2/50/61
IPR000156Ran_bind_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO03G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005684NSK005684Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02400.1NO03G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|6004gene_1426Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02400.1NO03G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02400 ID=NO03G02400|Name=NO03G02400|organism=Nannochloropsis oceanica|type=gene|length=1422bp
ATGGCAACGACCACCGGCATCAGCGACCCTGCAATTAGGCATGAAGATCC
CACGATGACTGCCGCCTCTGAGACGACGACGACAACGACGACGACGACAA
CGACGACGACCGCGACGGAAGGCAGCAGCCCTGCACCCGAGTCGGGCTCG
GCGACAAAAAAAAAGCGGGGGGCTGGGGACGACTGGGCCAAGAGCAAGAA
CGACGTTGACAACGATGATTCAAGTGAGATCGCAGAAGAAGGCACTGTCT
CGGGCGAGTTTCGACGTGCGGATCCCGAGACGCTGAGCAAGCGGAGGATA
GTCAAGGCCCGTCGGCCACCTGGCATGGAAGGAGGAGATGGGTCACCTGC
AGGATCGGCGACGGGTGTGGAGGATAAGTCTGTGACCGCCAATCCCTTTG
CAGCCCTTTCTTTAACGAGAGCCAAGACTGATGCTATCGGGGGAGGTGGC
GTGTTCGGGAGTGGGTTCCCCCAGACGAATGCTGCTTCCATCCTCGGGGT
AAGTGGCGGGGGTGGGGGTTGGGGTAGCACGGGAGCGAAGGGAGTTGACA
TGGTGCGGCCAGGCACTGGACCAGGATTAGGCTCGGCGCCGGTTGGGTTT
GCTGCGTATAAACTCAATCCGTTTCAGAGCGCGGCTCCGAGTGCGGGAAC
TGGGGCGTCGTCGTCGTCGTTTGTCTCGTCGCCTTCGAAGAGGAAGCCAC
CCAGTGAGTTGGCGGGGGCGTCCGAGGCCAGTTCTCAATCACAGTTTGGT
AGGCCTGCTGCTTCGATCAATCAGGGGGGCGAGGATGAAGAAGATGGTAG
AGGTAGAGGGGGTAGTCCTGCCGGGGGAGTAGGGGAGGAGGATTTGGAAG
CGGAGCCGAATGTGACGTTTGACGTGCCCAAAGTGCATGGGTTAAAGGAC
GCATCTTACAAGCCCTTGACAGGCGAGGAGCTAGAGATATGCGTGTTGCA
ATTGCGCTCAAAATTGTACCGCTTGACAGAGGTGAAGACTAAAGATGATG
CGGCGGGAGGGGGAGGGGCGTCGTCCTCCTCATCGGCGCAGCCACGACGT
GACTGGGTGGAGACCGGCGTGGGACAAGCCAAGGTACTGAAACCACTGTC
GAGGAATGACAATTTCTCGGCGCCTGCCCGGATAGTGATGCGGCGGGAGC
CTGGGACGAGTGTCTTGATCAATACGTTGCTGAAGGAGCCGGTGGGGGTA
GCCAAGCATGCTGACAAGGCGTTGCGGCTCACATGTTTGGATGAGAATGG
AATGCCTTCTACGTTTTTGTTCCGGTTTAAGACAACGGATGAGATGGAGC
AAATGCTAGGGGAGATTGAGAGGCAACTGGCCATTGCCGCGGGACCAGGA
AGGGGGGGTGGGATAAAGGAGGAAGCAGCCGTGGGGGAAGGGAAGAAGAA
GGATAAGGCCAATGCCGTCTGA
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protein sequence of NO03G02400.1

>NO03G02400.1-protein ID=NO03G02400.1-protein|Name=NO03G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MATTTGISDPAIRHEDPTMTAASETTTTTTTTTTTTTATEGSSPAPESGS
ATKKKRGAGDDWAKSKNDVDNDDSSEIAEEGTVSGEFRRADPETLSKRRI
VKARRPPGMEGGDGSPAGSATGVEDKSVTANPFAALSLTRAKTDAIGGGG
VFGSGFPQTNAASILGVSGGGGGWGSTGAKGVDMVRPGTGPGLGSAPVGF
AAYKLNPFQSAAPSAGTGASSSSFVSSPSKRKPPSELAGASEASSQSQFG
RPAASINQGGEDEEDGRGRGGSPAGGVGEEDLEAEPNVTFDVPKVHGLKD
ASYKPLTGEELEICVLQLRSKLYRLTEVKTKDDAAGGGGASSSSSAQPRR
DWVETGVGQAKVLKPLSRNDNFSAPARIVMRREPGTSVLINTLLKEPVGV
AKHADKALRLTCLDENGMPSTFLFRFKTTDEMEQMLGEIERQLAIAAGPG
RGGGIKEEAAVGEGKKKDKANAV*
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Synonyms
Publications