NO03G02240, NO03G02240 (gene) Nannochloropsis oceanica

Overview
NameNO03G02240
Unique NameNO03G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length680
Alignment locationchr3:659682..660361 +

Link to JBrowse

Properties
Property NameValue
DescriptionGamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:659682..660361 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019379Gamma_Secretase_Asp_P_PEN2
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO03G02240 vs. NCBI_GenBank
Match: XP_005852657.1 (hypothetical protein NGA_2091620 [Nannochloropsis gaditana CCMP526] >EKU23175.1 hypothetical protein NGA_2091620 [Nannochloropsis gaditana CCMP526] >EWM29661.1 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 1.800e-39
Identity = 79/127 (62.20%), Postives = 98/127 (77.17%), Query Frame = 0 
Query:    1 MVRTFMPQPTLEDAQVVLAKRFFFMGCLGLPWLFAVSVMYFWPKVYSGSKISSTGNS---SMVRRDGGPQHGNPELRKWVGRSFAGAVLGFGILIGWVILFQLRWRGWGSGVLNYMISAPESYSSGW 125
            MVRTF+PQPT +DAQV+LAKRFF +GCLGLPWL+AVSV+YFWPK++       TG +   S + R+ GP+    ELRKWV RS  GA++GFG+L  W+I FQLRW+ WG GVL YM+SAP+SYSSGW
Sbjct:    1 MVRTFIPQPTQDDAQVLLAKRFFVVGCLGLPWLWAVSVLYFWPKLHGNETAEQTGQAHGDSNLNRE-GPRVAKSELRKWVNRSLVGAIVGFGLLFAWLIFFQLRWQKWGYGVLPYMVSAPQSYSSGW 126
[Close]
BLAST of NO03G02240 vs. NCBI_GenBank
Match: XP_002296614.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87310.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.9 bits (180), Expect = 3.800e-10
Identity = 43/128 (33.59%), Postives = 63/128 (49.22%), Query Frame = 0 
Query:   15 QVVLAKRFFFMGCLGLPWLFAVSVMYFWPKVYS---------GSKISSTGNSSMVRRDGGPQHG---------NPELRKWVGRSFAGAVLGFGILIGWVILFQLRWRGWGSGVLNYMISAPESYSSGW 125
            ++ L+KR FF+GCLGLPWL+  +V+YF  KV+          G K       S    +GG +             EL KWV RS  GA+L   + + WVI FQ+    +G     +++ A E  ++GW
Sbjct:   20 EITLSKRMFFVGCLGLPWLWICNVLYFRLKVFGPMVMFDYWPGQKCKYISERSAANEEGGDEENEEQLFSLRERQELEKWVKRSTRGAMLVVSVFLAWVITFQVNKDNFGDRW--FVMDATEEEATGW 145
The following BLAST results are available for this feature:
BLAST of NO03G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852657.11.800e-3962.20hypothetical protein NGA_2091620 [Nannochloropsis ... [more]
XP_002296614.13.800e-1033.59predicted protein [Thalassiosira pseudonana CCMP13... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005668NSK005668Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02240.1NO03G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572016gene_1410Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100112g21gene963Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02240.1NO03G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02240 ID=NO03G02240|Name=NO03G02240|organism=Nannochloropsis oceanica|type=gene|length=680bp
GGGGGAAAATGCAAATGCAACGATGGAGATGATGTAAGAGCTTCATCTCT
TTGTCCGTGTGTGTACGCGTATATGTGTTTGTTGTGTTGTGGTAATGCAT
TGTGTTGTCAAGGCACGTCACATCTGCCTCGTTTGGTCATCAATTACGAC
AATCGCTCACAACCCAGCAGCCCATTTTTCTTCTCAACATCACACTCACA
CAGATTACCAAAACACCAACCATGGTGCGCACCTTCATGCCGCAGCCGAC
ACTGGAGGACGCTCAAGTCGTGTTGGCGAAGCGCTTCTTTTTTATGGGTT
GTTTGGGTTTGCCTTGGCTTTTTGCCGTCTCTGTCATGTACTTCTGGCCT
AAGGTTTACAGCGGGAGCAAAATCAGCAGCACGGGCAACAGCAGCATGGT
AAGAAGAGATGGAGGGCCACAACACGGTAACCCCGAGCTGCGGAAGTGGG
TAGGCCGGTCGTTTGCTGGGGCCGTTTTGGGTTTTGGCATCCTCATTGGA
TGGGTCATCTTGTTTCAATTGCGGTGGCGAGGGTGGGGGTCTGGGGTTCT
GAACTACATGATCAGTGCGCCCGAGAGTTATTCGTCGGGATGGTAAGTAT
TGAGTGGAGAAAGAAAAAATAGAAACCAAAATTTTCGTATGTAAAGAAGG
GTGAAAGCGTGGTCTGATATGCCAATTACA
back to top

protein sequence of NO03G02240.1

>NO03G02240.1-protein ID=NO03G02240.1-protein|Name=NO03G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MVRTFMPQPTLEDAQVVLAKRFFFMGCLGLPWLFAVSVMYFWPKVYSGSK
ISSTGNSSMVRRDGGPQHGNPELRKWVGRSFAGAVLGFGILIGWVILFQL
RWRGWGSGVLNYMISAPESYSSGW*
back to top
Synonyms
Publications