NO03G02190, NO03G02190 (gene) Nannochloropsis oceanica

Overview
NameNO03G02190
Unique NameNO03G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1230
Alignment locationchr3:649517..650746 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:649517..650746 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019002Ribosome_biogenesis_Nop16
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO03G02190 vs. NCBI_GenBank
Match: EWM29681.1 (hypothetical protein Naga_100299g4 [Nannochloropsis gaditana])

HSP 1 Score: 67.0 bits (162), Expect = 4.000e-8
Identity = 47/115 (40.87%), Postives = 52/115 (45.22%), Query Frame = 0 
Query:    1 MKVRRGAKKIRLQGKRQNQ-----------------------------------------------------NTKALFSLPPDAQRDRNPRRRLMSEEDQLYIVKLLEEHGNDFK 63
            MKVRRGAKKIRLQGKRQN                                                      + + +FSLPP  +RDRNPRRR MS EDQ YIVKLL  HGND+K
Sbjct:    1 MKVRRGAKKIRLQGKRQNHSKFSKPKTGMHSVVQTVWEGKDSVRKNLQKLGVSDDPNRTTAFCASPTGSSGIDPQDVFSLPPAERRDRNPRRRPMSAEDQAYIVKLLMVHGNDYK 115
The following BLAST results are available for this feature:
BLAST of NO03G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29681.14.000e-840.87hypothetical protein Naga_100299g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005663NSK005663Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02190.1NO03G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572000gene_1405Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100299g4gene958Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02190.1NO03G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02190 ID=NO03G02190|Name=NO03G02190|organism=Nannochloropsis oceanica|type=gene|length=1230bp
ATGAAGGTCCGTCGAGGTGCGAAGAAGATTCGCCTCCAGGGAAAGCGCCA
AAACCAGAgtaagttcatcaagcctaaggcaggcatgcactctgttgtcc
agcccctatggcagggcaagcattccgtgcgggacaacctcgctcgtctc
ggtgtggcggatgatcccaatcgggctgtcgatacgatcaaaatgtcgtc
aacatcaaccggcgccacagATACCAAGGCACTTTTTAGCCTACCACCGG
ACGCGCAGCGGGACCGAAACCCGCGCCGACGTCTTATGAGTGAGGAGGAC
CAGTTGTACATTGTCAAGCTGTTGGAAGAGCATGGAAATGATTTCAAGgt
acgtttgtctagtgtggctttgatggggtaaggagtttctttttccagga
gtcaatacattcgtagctcaatttttggttgccaaaccgatcatggcttt
atttttccctctctctctctccctctgcttccatttctttctaaaaccaa
atccaagctctacttctagctgagtcctgctacgttcaaaagaccccatc
gtcaaggcactcaaatttgtagagcaagacaaatgatttcacacagaagc
ctcctcgctatcccaggatgagtcaagctgtgctcgggaggaatgttggg
gcaaacgggagggaaggaagaaggaagtggaggaatgcggttcttcacta
aaatggtggggattgctgtctttcgcttctggactctcgccatcctgtac
gctgccgctccttttgggccggttaggcattcagtcggagtccatcggga
cgttgggggcttacacttcatttcacatacatgtagatggatgagatatt
ttgtttaggtactgcactcgcttattccaatcatttttcacttttctgcg
agagaggggtgatgataattgatgaatttcgtctttgaaagtgccttaag
tcttgatgtgtgtgctagtcttcttgctcccctgccctgcgaggctcaca
cttagttacgcccagctcccctcacaatttccttcattttttctcacata
cgtaatgcatgcacacacacacacaaccactctctccatacgtagGCCAT
GGAACGTGACATGTCCCTCAACTGCTGGCAACATTTGGAAACCAAGCTCA
GGAGCATGGCCAAGCGCTACTTCTCCCTTTCGCCCGACCAATGCCTCGTG
CCCCTTCCTGTTACATCTTCCTTAACATAA
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protein sequence of NO03G02190.1

>NO03G02190.1-protein ID=NO03G02190.1-protein|Name=NO03G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MKVRRGAKKIRLQGKRQNQNTKALFSLPPDAQRDRNPRRRLMSEEDQLYI
VKLLEEHGNDFKAMERDMSLNCWQHLETKLRSMAKRYFSLSPDQCLVPLP
VTSSLT*
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Synonyms
Publications