NO03G02100, NO03G02100 (gene) Nannochloropsis oceanica

Overview
NameNO03G02100
Unique NameNO03G02100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1196
Alignment locationchr3:626076..627271 +

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Properties
Property NameValue
DescriptionSelenium binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:626076..627271 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO03G02100 vs. NCBI_GenBank
Match: EWM29693.1 (selenium binding protein [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 1.300e-26
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0
Query:   77 VKTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDF 152
            V +I+VEACKQCQCFKKR EILE+  K LKP L FVLN E+PTKGVFIVRTD GEVLWSMTGLTRPFQPLKAVDF
Sbjct:   73 VSSIVVEACKQCQCFKKRAEILEQHLKVLKPELKFVLNPERPTKGVFIVRTDTGEVLWSMTGLTRPFQPLKAVDF 147          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_008802752.1 (PREDICTED: uncharacterized protein LOC103716503 [Phoenix dactylifera])

HSP 1 Score: 82.4 bits (202), Expect = 1.400e-12
Identity = 36/85 (42.35%), Postives = 57/85 (67.06%), Query Frame = 0
Query:   78 KTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            KTI+VEACKQC  FK R  ++++  +   PG++  +N EKP +G F +R + GEV  S+  + RPF P+K +D E V +++V+K+
Sbjct:   99 KTIIVEACKQCTSFKTRANMVKEGLEKAVPGISVSVNPEKPRRGCFEIRKESGEVFVSLLNMPRPFTPMKKLDMEKVIEDIVEKI 183          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_020243674.1 (selenoprotein H-like, partial [Asparagus officinalis])

HSP 1 Score: 80.1 bits (196), Expect = 7.000e-12
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0
Query:   80 IMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            I++EACKQC  FK R  I+++  ++  PG+   +N EKP +G F VR   GE+  S+ GL RPF P+K +D + V +++V+K+
Sbjct:   38 IVIEACKQCNSFKTRANIVKEGLESAIPGIDVTINPEKPRRGCFEVRKASGEIFISLLGLKRPFTPMKNLDMDEVVEDIVNKI 120          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_009402262.1 (PREDICTED: selenoprotein H [Musa acuminata subsp. malaccensis])

HSP 1 Score: 78.6 bits (192), Expect = 2.000e-11
Identity = 32/87 (36.78%), Postives = 56/87 (64.37%), Query Frame = 0
Query:   76 AVKTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            A KTI++EACKQC  FK R   +++  ++  PG+   +N +KP +G F +R + G+V  S+  + RPF P+K +D + V ++++ K+
Sbjct:   94 AAKTIIIEACKQCTSFKTRAVKVKEGLESAVPGIVVAVNPDKPRRGCFEIREENGQVFVSLLNMPRPFTPMKKLDMDAVVEDIIKKI 180          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_006371804.1 (uncharacterized protein KIAA1211 [Populus trichocarpa] >PNS22607.1 hypothetical protein POPTR_T130400v3 [Populus trichocarpa])

HSP 1 Score: 77.4 bits (189), Expect = 4.500e-11
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 0
Query:   78 KTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            KTI++E CKQC  FK R   ++ +  +  PG++ +LN EKP +G F +R + GE   S+  + RPF PLKA+D + V  +++D++
Sbjct:  118 KTIVIEHCKQCNAFKTRAIQVKDSLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQNMKRPFPPLKALDMDRVISDIIDRV 202          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_010922346.1 (PREDICTED: selenoprotein H [Elaeis guineensis])

HSP 1 Score: 77.4 bits (189), Expect = 4.500e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   78 KTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            KTI+VEACKQC  FK R  ++++  +   P ++  +N EKP +G F +R + GEV  S+  + RPF P+K +D E V +++  K+
Sbjct:   99 KTIIVEACKQCNSFKTRANMVKEGLEKAVPDISVSVNPEKPRRGCFEIRKESGEVFVSLLNMPRPFTPMKKLDMEKVIEDIAKKI 183          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_006371848.2 (LOW QUALITY PROTEIN: helicase SWR1 [Populus trichocarpa])

HSP 1 Score: 77.4 bits (189), Expect = 4.500e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   78 KTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            KTI++E CKQC  FK R   ++    +  PG++ +LN EKP +G F +R + GE   S+  + RPF PLKA+D + V  +++D++
Sbjct:  118 KTIVIEHCKQCNAFKTRAIQVKDGLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQNMKRPFSPLKALDMDRVISDIIDRV 202          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_011045029.1 (PREDICTED: uncharacterized protein LOC105140055 [Populus euphratica])

HSP 1 Score: 77.0 bits (188), Expect = 5.900e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   78 KTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            KTI++E CKQC  FK R   ++    +  PG++ +LN EKP +G F +R + GE   S+  + RPF PLKA+D + V  +++D++
Sbjct:  113 KTIVIEHCKQCNAFKTRAIQVKDGLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQNMKRPFPPLKALDMDQVISDIIDRV 197          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: XP_011015271.1 (PREDICTED: selenoprotein H-like [Populus euphratica])

HSP 1 Score: 77.0 bits (188), Expect = 5.900e-11
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   78 KTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            KTI++E CKQC  FK R   ++    +  PG++ +LN EKP +G F +R + GE   S+  + RPF PLKA+D + V  +++D++
Sbjct:  118 KTIVIEHCKQCNAFKTRAIQVKDGLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQNMKRPFPPLKALDMDQVISDIIDRV 202          
BLAST of NO03G02100 vs. NCBI_GenBank
Match: OAY65970.1 (hypothetical protein ACMD2_12407 [Ananas comosus])

HSP 1 Score: 76.6 bits (187), Expect = 7.700e-11
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   76 AVKTIMVEACKQCQCFKKRFEILEKATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVDFELVAKELVDKL 163
            A KTI+VEACKQC  FK R   ++   ++  PG+T  +N EKP +G F +R D GEV  S+  + RPF+ +K +D + V  ++V K+
Sbjct:   90 ASKTIIVEACKQCNSFKTRAIKVKDGLESAVPGVTVTINPEKPRRGCFEIREDGGEVFVSLLDMPRPFKLMKNLDMDEVIVDIVKKI 176          
The following BLAST results are available for this feature:
BLAST of NO03G02100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29693.11.300e-2682.67selenium binding protein [Nannochloropsis gaditana... [more]
XP_008802752.11.400e-1242.35PREDICTED: uncharacterized protein LOC103716503 [P... [more]
XP_020243674.17.000e-1242.17selenoprotein H-like, partial [Asparagus officinal... [more]
XP_009402262.12.000e-1136.78PREDICTED: selenoprotein H [Musa acuminata subsp. ... [more]
XP_006371804.14.500e-1140.00uncharacterized protein KIAA1211 [Populus trichoca... [more]
XP_010922346.14.500e-1140.00PREDICTED: selenoprotein H [Elaeis guineensis][more]
XP_006371848.24.500e-1140.00LOW QUALITY PROTEIN: helicase SWR1 [Populus tricho... [more]
XP_011045029.15.900e-1140.00PREDICTED: uncharacterized protein LOC105140055 [P... [more]
XP_011015271.15.900e-1140.00PREDICTED: selenoprotein H-like [Populus euphratic... [more]
OAY65970.17.700e-1142.53hypothetical protein ACMD2_12407 [Ananas comosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005655NSK005655Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02100.1NO03G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571969gene_1396Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100114g7gene948Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02100.1NO03G02100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02100 ID=NO03G02100|Name=NO03G02100|organism=Nannochloropsis oceanica|type=gene|length=1196bp
ATGCCTCCCAAAAAGGCCAGCGCAGCTAAGAAGCCGGCGGTCAAGAAGgt
agagatttttttagtgttggttgatcttcgcggggaggtcgatgttcgtt
ggatgatgtcttcaggcatacaggagaggcggtgcatgtatcgaatagcc
gtggggcaatgtgaggatagactgtgggttatgactgatgtcctggctgg
gatggttgtgaaggattacgagggccttaggcggaagtagggacctgacc
tagctgtcaccgcgccgatagccgcatacacgcaaacgaccatcgtgatc
aaactaacgcaagaagtctactaagaagcgcatgaaaacggaatgattac
cagccctgagtgatagacatgcgctggtctctatttcacaagttccaaat
tttaacccatgtctcagacacatacatcacttccacaaacagACGGCGGC
CGCCATGGCCAAAAAGGTGGTCAAGGCCTCTCCTGCGCCTAAGAAAGCAC
CACCCGCGCCTAAGAGGGCTTCTGCTCCTAAACCGAAATCACTTCCTGCT
CCAAACAAATCCGATGCTGCTCCTACTCTTGCAAAGGCAACAACCGCTTC
TCCGGCCAAGAAAGCCGCGGCCGTGAAGACCATCATGGTTGAGGCCTGCA
AACAGTGCCAATgtaagagctcttggtagacattcaatttcaggatgtcg
ggatatttaagtgtatgatgccttttccagcacaccattaccccattcac
tcctgcacccgctcgtccactcctttggcagGCTTTAAGAAGCGCTTCGA
GATCCTCGAGAAAGCCACCAAGGCCCTCAAGCCCGGCTTGACCTTCGTTT
TGAATGCGGAGAAGCCCACAAAGGGCGTATTTATCGTCCGCACGGACAAG
GGGGAGGTGCTTTGGTCTATGACTGGACTCACGAGGCCGTTCCAACCTTT
GAAGgtatgtgaatggagatggagagaaaaaggaaagccagagaggaaaa
cggactaaaacggggatatactttttgcgaaatattcaccacacatggga
aataatcacggtgcgtttgtaattggtacataagcgtatcccatttcctc
tgatataaaaagtatttccaccctctcacccatcatgactgtacccagGC
GGTAGATTTCGAGCTTGTTGCCAAAGAGCTAGTGGACAAGCTTTAA
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protein sequence of NO03G02100.1

>NO03G02100.1-protein ID=NO03G02100.1-protein|Name=NO03G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MPPKKASAAKKPAVKKTAAAMAKKVVKASPAPKKAPPAPKRASAPKPKSL
PAPNKSDAAPTLAKATTASPAKKAAAVKTIMVEACKQCQCFKKRFEILEK
ATKALKPGLTFVLNAEKPTKGVFIVRTDKGEVLWSMTGLTRPFQPLKAVD
FELVAKELVDKL*
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Synonyms
Publications