NO03G02030, NO03G02030 (gene) Nannochloropsis oceanica

Overview
NameNO03G02030
Unique NameNO03G02030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr3:612853..613713 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:612853..613713 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009858DUF1415
Homology
BLAST of NO03G02030 vs. NCBI_GenBank
Match: WP_099378395.1 (DUF1415 domain-containing protein [Janthinobacterium sp. BJB426] >PHV27843.1 hypothetical protein CSQ93_12900 [Janthinobacterium sp. BJB426])

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-16
Identity = 68/179 (37.99%), Postives = 92/179 (51.40%), Query Frame = 0
Query:   90 NTDTDTDDD-AAIIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLTE--KIADKNAEALEELG 266
            NT T  DDD A IIA T AW+   VI   LCPFA+ V     ++YVV      +++  ++++E   L      +  TT+LI PY  + DF  + E     +  +E+  L  E+ VASFHP Y F     +DD  +Y  RSPYP  +LLR   +   A E   E  +I DKN   LE LG
Sbjct:    2 NTPTRHDDDNAVIIANTVAWLEKAVIGLNLCPFAKAVHVKKQIRYVVCESSNPEDLLAMLMDELQTLADTDPEQIDTTLLIHPYT-LNDFLDYNEFLDVADAAVEDMHLAGELQVASFHPNYQF-AETFEDDISNYTNRSPYPTLHLLREDSI-ERAVEAFPEASEIFDKNIATLEALG 177          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: OUX24651.1 (hypothetical protein CBE15_02730 [Euryarchaeota archaeon TMED255])

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-16
Identity = 58/170 (34.12%), Postives = 95/170 (55.88%), Query Frame = 0
Query:  104 RTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRV-WAYADEGLTEKIADKNAEALEELGIKEVRRR 273
            RT AW+++ V+   LCPFA  VI  D ++  V +    +++A + L+E   +   PE++ ATT+L+ P   +EDF  + +      D L +  L   + +ASFHPQY FGG +++ +  H+  RSPYP+ + LR + V     D    E+I  +N E LE +   E+++R
Sbjct:   23 RTRAWLNSFVLGLNLCPFAGPVIAADGLRLTVFQSSALEDIAAIYLKELHLICHSPESKIATTLLVLPVG-LEDFEVYLDFVDNATDLLGDQGLAGTIQLASFHPQYHFGGELEEANS-HFTNRSPYPMIHFLRQEMVARLLVDFSNPEEIPQRNIETLEAIDAAELQQR 190          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: EPJ48441.1 (hypothetical protein OFPI_29550 [Osedax symbiont Rs2])

HSP 1 Score: 95.1 bits (235), Expect = 3.700e-16
Identity = 60/170 (35.29%), Postives = 92/170 (54.12%), Query Frame = 0
Query:  105 TCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLR-AQRVWAYADEGLTEKIADKNAEALEELGIKEVRRRF 274
            T  W+  +V+   LCPFA+ V+K  +++Y +T     + +    L E   ++   E + ATT++I P A V DF  F E     E+ LE + L +E  +ASFHP Y+F  GV  DD  H+  RSPYP+ +++R  Q     A     E I ++N + L +LG  E+ +RF
Sbjct:   13 TQQWLETIVVGMNLCPFAKPVVKAQSLRYSLTPESDSEPLLRFFLAEIEKIVQASEQKIATTLMIMPNA-VADFYDFLELLAQCEELLESAQLADEFQLASFHPGYLF-AGVDSDDMSHWTNRSPYPMLHIIRQGQMSRLLASYPNPESIPERNIQLLRDLGRAEMIQRF 180          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: WP_091670958.1 (DUF1415 domain-containing protein [Massilia sp. PDC64] >SDF82669.1 hypothetical protein SAMN05428966_12413 [Massilia sp. PDC64])

HSP 1 Score: 95.1 bits (235), Expect = 3.700e-16
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 0
Query:   90 NTDTDTDDDAAIIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLTE--KIADKNAEALEELG 266
            +T  +  DD AIIA T  W+   VI   LCPFA+ V   D V+YVV+  R  + +   +++E   L      E  TT+LI PY  ++DF  F E     +  +E+  L  E+ +ASFHP Y F      +D  +Y  RSPYPV  +LR   +   A E + +  +I +KN E +E+LG
Sbjct:    2 STANENVDDDAIIAATRRWVDRAVIGLNLCPFAKAVQVKDQVRYVVSHARTPESLLDTLMDELQLLADTDPEEVDTTLLIHPYV-LQDFLDFNEFLDVADAAVEDMSLDGELQIASFHPDYQF-AETDPNDIENYTNRSPYPVLQILREDSI-DRAVEAIPDAAEIFEKNIETMEKLG 176          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: KRP19290.1 (hypothetical protein ABS23_04305 [SAR92 bacterium BACL16 MAG-120619-bin48] >KRP26825.1 hypothetical protein ABS22_01925 [SAR92 bacterium BACL16 MAG-120322-bin99])

HSP 1 Score: 94.7 bits (234), Expect = 4.800e-16
Identity = 60/170 (35.29%), Postives = 87/170 (51.18%), Query Frame = 0
Query:  105 TCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADE-GLTEKIADKNAEALEELGIKEVRRRF 274
            T AW+   ++   LCPFA   +  DT++  V+    R+ +    L E   + G  E E AT++L+ P A +EDF  + +  +  ED LEE  L   + +ASFHP+Y+F G    D   H+  RSPYPV + LR   V    D     E I  +N   LE +G  E+ RR+
Sbjct:    9 TRAWLQQFIVGLNLCPFARPFVGSDTLRITVSESDDRQVLINTFLRELDVIQGSTEGEIATSLLVMPNA-LEDFDDYLDFLQLAEDLLEELGLDGTIQLASFHPRYLFDGEAA-DSASHFSNRSPYPVIHFLREAMVSDALDHFPQPETIPQRNISTLEAIGRAEIERRW 176          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: WP_075795575.1 (DUF1415 domain-containing protein [Massilia putida])

HSP 1 Score: 94.7 bits (234), Expect = 4.800e-16
Identity = 64/178 (35.96%), Postives = 94/178 (52.81%), Query Frame = 0
Query:   90 NTDTDTDDDAAIIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLTE--KIADKNAEALEELG 266
            +T  +  DD AI+A T  W+   VI   LCPFA+ V   D V+YVV+  R  + +   +++E   L      +  TT+LI PY  ++DF  F E     +  LE+  L  E+ +ASFHP Y F      +D  +Y  RSPYPV  LLR   +   A E + +  +I +KN + +E+LG
Sbjct:    2 STANENVDDDAIVAATRRWVDRAVIGLNLCPFAKAVQVKDQVRYVVSHARSPESLLDTLMDELQLLADTDPEQIDTTLLIHPYV-LQDFLDFNEFLDVADAALEDMSLDGELQIASFHPDYQF-ADTDPNDIENYTNRSPYPVLQLLREDSI-DRAVEAIPDAAEIFEKNIDTMEKLG 176          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: WP_099400478.1 (DUF1415 domain-containing protein [Janthinobacterium sp. BJB312] >PHV35283.1 hypothetical protein CSQ94_01680 [Janthinobacterium sp. BJB312])

HSP 1 Score: 94.7 bits (234), Expect = 4.800e-16
Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = 0
Query:   96 DDDAAIIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLTE--KIADKNAEALEELG 266
            DD+A IIA T AW+   VI   LCPFA+ V     ++YVV      +++  ++++E   L      +  TT+LI PY  + DF  + E     +  +E+  L  E+ VASFHP Y F     +DD  +Y  RSPYP  +LLR   +   A E   E  +I DKN   LE LG
Sbjct:    9 DDNAVIIANTVAWLEKAVIGLNLCPFAKAVHVKKQIRYVVCESSNPEDLLAMLMDELQTLADTDPEQIDTTLLIHPYT-LNDFLDYNEFLDVADAAVEDMHLAGELQVASFHPNYQF-AETFEDDISNYTNRSPYPTLHLLREDSI-ERAVEAFPEASEIFDKNIATLEALG 177          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: WP_056127882.1 (MULTISPECIES: DUF1415 domain-containing protein [Massilia] >KQY11930.1 hypothetical protein ASD28_04750 [Massilia sp. Root133] >KQZ34479.1 hypothetical protein ASD92_09300 [Massilia sp. Root1485])

HSP 1 Score: 94.4 bits (233), Expect = 6.300e-16
Identity = 64/178 (35.96%), Postives = 94/178 (52.81%), Query Frame = 0
Query:   90 NTDTDTDDDAAIIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLTE--KIADKNAEALEELG 266
            +T  +  DD AIIA T  W+   VI   LCPFA+ V   D V+YVV+  R  + +   +++E   L      +  TT+LI PY  ++DF  F E     +  +E+  L  E+ +ASFHP Y F      +D  ++  RSPYPV  LLR   +   A E + +  +I +KN E +E+LG
Sbjct:    2 STTNENVDDDAIIAATRRWVDRAVIGLNLCPFAKAVQVKDQVRYVVSHARAPESLLDTLMDELQLLADTDPEQVDTTLLIHPYV-LQDFLDFNEFLDVADAAVEDMSLDGELQIASFHPDYQF-ADTDPNDIENFTNRSPYPVLQLLREDSI-DRAVEAIPDAAEIFEKNIETMEQLG 176          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: WP_087049500.1 (DUF1415 domain-containing protein [Caballeronia ptereochthonis] >SAL00137.1 hypothetical protein AWB83_06201 [Caballeronia ptereochthonis])

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-15
Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 0
Query:   91 TDTDTDDDAAIIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETA-TTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRA----QRVWAYADEGLTEKIADKNAEALEELG 266
            TD  T D+  +IA T  W+   VI   LCPFA+ V     ++YVV+  R  +++ V + EE L L+   + ET  TT+ + P AF  DF  + +   F E  L++  LG E+ +ASFHPQY F  G + DD  +Y  R+PYP+F+LLR     + V A+ D      I ++N + L  LG
Sbjct:    2 TDGSTRDE--VIAATQHWLTRAVIGLNLCPFAKSVHVKKQIRYVVSEARGVEDLVVELAEE-LRLLKETDPETVDTTLFVTPRAFA-DFADYNDALFFAERLLDQMGLGGELQIASFHPQYRF-EGTEPDDIDNYTNRAPYPIFHLLREASIDRAVDAFPD---ASDIYERNIDTLRRLG 173          
BLAST of NO03G02030 vs. NCBI_GenBank
Match: WP_104005288.1 (DUF1415 domain-containing protein [Marinobacterium lutimaris] >SEG83832.1 hypothetical protein SAMN05444390_10634 [Marinobacterium lutimaris])

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-15
Identity = 60/187 (32.09%), Postives = 105/187 (56.15%), Query Frame = 0
Query:   93 TDTDDDAAIIARTC--AWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLR----AQRVWAYADEGLTEKIADKNAEALEELGIKEVRRRF 274
            T +D+     ART   AW+  MV+   LCPFA  V++++T++Y V+      ++    L++   L+  P+ E +TT++I P+  ++DF  F +     E  LE++ + +   +ASFHP Y+F  GV  DD  H+  R+P+P  +L+R    ++ + +YAD    E+I ++N   L E+G + +  RF
Sbjct:    3 TASDERLVEQARTLTQAWVEAMVVGLNLCPFAAPVVRNETIRYHVSEAGNEDDLLRDFLQQLSDLVETPQAELSTTLVITPW-LLQDFEEFLDLVADAEALLEQAGVEDLFQIASFHPGYLF-EGVDADDLSHWTNRAPFPTLHLIRQDEMSRALASYAD---PEQIPERNIARLREMGREGLIARF 184          
The following BLAST results are available for this feature:
BLAST of NO03G02030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_099378395.12.200e-1637.99DUF1415 domain-containing protein [Janthinobacteri... [more]
OUX24651.12.800e-1634.12hypothetical protein CBE15_02730 [Euryarchaeota ar... [more]
EPJ48441.13.700e-1635.29hypothetical protein OFPI_29550 [Osedax symbiont R... [more]
WP_091670958.13.700e-1636.52DUF1415 domain-containing protein [Massilia sp. PD... [more]
KRP19290.14.800e-1635.29hypothetical protein ABS23_04305 [SAR92 bacterium ... [more]
WP_075795575.14.800e-1635.96DUF1415 domain-containing protein [Massilia putida... [more]
WP_099400478.14.800e-1637.21DUF1415 domain-containing protein [Janthinobacteri... [more]
WP_056127882.16.300e-1635.96MULTISPECIES: DUF1415 domain-containing protein [M... [more]
WP_087049500.11.100e-1537.78DUF1415 domain-containing protein [Caballeronia pt... [more]
WP_104005288.11.100e-1532.09DUF1415 domain-containing protein [Marinobacterium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005696NSK005696Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02030.1NO03G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571942gene_1389Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g38gene986Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02030.1NO03G02030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02030 ID=NO03G02030|Name=NO03G02030|organism=Nannochloropsis oceanica|type=gene|length=861bp
ATGACTGGGGCCGTCATCCCCGTAGCCCAGCTCCTGAGCCTGCCCTTCCT
CTTCCTCCTACTTGCCGAGGGTTCGCCATTACCATCAGCAGCCTTTGTAC
TCCCGGCACTGTCGCAGGCCAAAAGGCCACGCCCACCCTCAAGGCCCTTC
TCCTCCGATGCACTGATAAAACACGCTCGTTTCATCTTTGTCTCGTCCAG
CCCCGCCTCCTCCCTACTCTCCTTTCCTCACTCGTCATCCTGCCCTTCCT
TCCTCTCACCCAAAGACAACACCGATACCGATACTGACGACGACGCGGCC
ATCATTGCGCGTACTTGCGCCTGGATTCATAACATGGTGATCCGCACCCC
TCTCTGTCCTTTTGCGGAGAAGGTAATAAAAGACGACACCGTAAAATACG
TCGTCACCCGTGTCCGAAAGAGAAAAGAAGTTGCCGTGCTGGTGCTGGAG
GAGGCCCTCGCATTAATTGGGGTCCCTGAGACAGAGACAGCTACCACAGT
CTTGATCGCGCCTTATGCATTTGTTGAGGATTTTCCGGCATTCTACGAGA
CGGAACGGTTCCTGGAAGACCATCTAGAAGAGAGCCCATTGGGGGAGGAA
GTGCTCGTGGCGTCTTTTCACCCTCAGTACATGTTCGGTGGAGGGGTAAA
AGATGATGACCCGATTCATTATGAAAAGCGCTCCCCATATCCTGTGTTTA
ATTTGTTGAGAGCACAAAGGGTGTGGGCGTACGCGGATGAGGGTTTGACA
GAGAAGATCGCTGATAAGAACGCGGAGGCTTTGGAAGAGCTAGGGATAAA
GGAGGTGAGAAGACGGTTTGCATTGGACAAAATAGAGGTGGAGGGAGAAG
GGATAATCTGA
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protein sequence of NO03G02030.1

>NO03G02030.1-protein ID=NO03G02030.1-protein|Name=NO03G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MTGAVIPVAQLLSLPFLFLLLAEGSPLPSAAFVLPALSQAKRPRPPSRPF
SSDALIKHARFIFVSSSPASSLLSFPHSSSCPSFLSPKDNTDTDTDDDAA
IIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLE
EALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEE
VLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLT
EKIADKNAEALEELGIKEVRRRFALDKIEVEGEGII*
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Synonyms
Publications