NO03G02030.1, NO03G02030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02030.1
Unique NameNO03G02030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr3:612853..613713 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:612853..613713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G02030.1 vs.
Match: EWM29625.1 (Protein of unknown function DUF1415 [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 2.500e-65
Identity = 135/212 (63.68%), Postives = 164/212 (77.36%), Query Frame = 0 
Query:   70 SSLLSFPHSSSCPSFLSPKDNTDTDTDDDAAIIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLEEALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEEVLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLTEKIADKNAEALEELGIKEVRRRFALDKIEVE 282
            S +++ P SSS  S  S   ++     DDAA+IART AWIHNMVIR PLCPFAEKV++D+TV+YVV R R++ ++   VLEEA AL+  PE  TATT+++AP AFVEDF AFYETERFLE  LE S L   VL+A+FHPQY FGGG+ + DPIH+EKRSP+PVFNLLRA+RVWAYA+EGLTEKIAD+N  AL  +GI EVRRRF L + EVE
Sbjct:  172 SKIVALPASSSTSSS-SFNPSSSPSGMDDAAVIARTQAWIHNMVIRIPLCPFAEKVVQDNTVRYVVVRARRKSDIIAHVLEEARALVETPEDVTATTIVLAPDAFVEDFSAFYETERFLEASLEASDLQHVVLLAAFHPQYTFGGGLSELDPIHFEKRSPFPVFNLLRAERVWAYANEGLTEKIADRNEAALAAIGIDEVRRRFTLSEKEVE 382
The following BLAST results are available for this feature:
BLAST of NO03G02030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29625.12.500e-6563.68Protein of unknown function DUF1415 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02030NO03G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02030.1NO03G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02030.1.cds1NO03G02030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02030.1 ID=NO03G02030.1|Name=NO03G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGACTGGGGCCGTCATCCCCGTAGCCCAGCTCCTGAGCCTGCCCTTCCT
CTTCCTCCTACTTGCCGAGGGTTCGCCATTACCATCAGCAGCCTTTGTAC
TCCCGGCACTGTCGCAGGCCAAAAGGCCACGCCCACCCTCAAGGCCCTTC
TCCTCCGATGCACTGATAAAACACGCTCGTTTCATCTTTGTCTCGTCCAG
CCCCGCCTCCTCCCTACTCTCCTTTCCTCACTCGTCATCCTGCCCTTCCT
TCCTCTCACCCAAAGACAACACCGATACCGATACTGACGACGACGCGGCC
ATCATTGCGCGTACTTGCGCCTGGATTCATAACATGGTGATCCGCACCCC
TCTCTGTCCTTTTGCGGAGAAGGTAATAAAAGACGACACCGTAAAATACG
TCGTCACCCGTGTCCGAAAGAGAAAAGAAGTTGCCGTGCTGGTGCTGGAG
GAGGCCCTCGCATTAATTGGGGTCCCTGAGACAGAGACAGCTACCACAGT
CTTGATCGCGCCTTATGCATTTGTTGAGGATTTTCCGGCATTCTACGAGA
CGGAACGGTTCCTGGAAGACCATCTAGAAGAGAGCCCATTGGGGGAGGAA
GTGCTCGTGGCGTCTTTTCACCCTCAGTACATGTTCGGTGGAGGGGTAAA
AGATGATGACCCGATTCATTATGAAAAGCGCTCCCCATATCCTGTGTTTA
ATTTGTTGAGAGCACAAAGGGTGTGGGCGTACGCGGATGAGGGTTTGACA
GAGAAGATCGCTGATAAGAACGCGGAGGCTTTGGAAGAGCTAGGGATAAA
GGAGGTGAGAAGACGGTTTGCATTGGACAAAATAGAGGTGGAGGGAGAAG
GGATAATCTGA
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protein sequence of NO03G02030.1

>NO03G02030.1-protein ID=NO03G02030.1-protein|Name=NO03G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MTGAVIPVAQLLSLPFLFLLLAEGSPLPSAAFVLPALSQAKRPRPPSRPF
SSDALIKHARFIFVSSSPASSLLSFPHSSSCPSFLSPKDNTDTDTDDDAA
IIARTCAWIHNMVIRTPLCPFAEKVIKDDTVKYVVTRVRKRKEVAVLVLE
EALALIGVPETETATTVLIAPYAFVEDFPAFYETERFLEDHLEESPLGEE
VLVASFHPQYMFGGGVKDDDPIHYEKRSPYPVFNLLRAQRVWAYADEGLT
EKIADKNAEALEELGIKEVRRRFALDKIEVEGEGII*
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mRNA from alignment at chr3:612853..613713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02030.1 ID=NO03G02030.1|Name=NO03G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp|location=Sequence derived from alignment at chr3:612853..613713+ (Nannochloropsis oceanica)
ATGACTGGGGCCGTCATCCCCGTAGCCCAGCTCCTGAGCCTGCCCTTCCT
CTTCCTCCTACTTGCCGAGGGTTCGCCATTACCATCAGCAGCCTTTGTAC
TCCCGGCACTGTCGCAGGCCAAAAGGCCACGCCCACCCTCAAGGCCCTTC
TCCTCCGATGCACTGATAAAACACGCTCGTTTCATCTTTGTCTCGTCCAG
CCCCGCCTCCTCCCTACTCTCCTTTCCTCACTCGTCATCCTGCCCTTCCT
TCCTCTCACCCAAAGACAACACCGATACCGATACTGACGACGACGCGGCC
ATCATTGCGCGTACTTGCGCCTGGATTCATAACATGGTGATCCGCACCCC
TCTCTGTCCTTTTGCGGAGAAGGTAATAAAAGACGACACCGTAAAATACG
TCGTCACCCGTGTCCGAAAGAGAAAAGAAGTTGCCGTGCTGGTGCTGGAG
GAGGCCCTCGCATTAATTGGGGTCCCTGAGACAGAGACAGCTACCACAGT
CTTGATCGCGCCTTATGCATTTGTTGAGGATTTTCCGGCATTCTACGAGA
CGGAACGGTTCCTGGAAGACCATCTAGAAGAGAGCCCATTGGGGGAGGAA
GTGCTCGTGGCGTCTTTTCACCCTCAGTACATGTTCGGTGGAGGGGTAAA
AGATGATGACCCGATTCATTATGAAAAGCGCTCCCCATATCCTGTGTTTA
ATTTGTTGAGAGCACAAAGGGTGTGGGCGTACGCGGATGAGGGTTTGACA
GAGAAGATCGCTGATAAGAACGCGGAGGCTTTGGAAGAGCTAGGGATAAA
GGAGGTGAGAAGACGGTTTGCATTGGACAAAATAGAGGTGGAGGGAGAAG
GGATAATCTGA
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Coding sequence (CDS) from alignment at chr3:612853..613713+

>NO03G02030.1 ID=NO03G02030.1|Name=NO03G02030.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr3:612853..613713+ (Nannochloropsis oceanica)
ATGACTGGGGCCGTCATCCCCGTAGCCCAGCTCCTGAGCCTGCCCTTCCT
CTTCCTCCTACTTGCCGAGGGTTCGCCATTACCATCAGCAGCCTTTGTAC
TCCCGGCACTGTCGCAGGCCAAAAGGCCACGCCCACCCTCAAGGCCCTTC
TCCTCCGATGCACTGATAAAACACGCTCGTTTCATCTTTGTCTCGTCCAG
CCCCGCCTCCTCCCTACTCTCCTTTCCTCACTCGTCATCCTGCCCTTCCT
TCCTCTCACCCAAAGACAACACCGATACCGATACTGACGACGACGCGGCC
ATCATTGCGCGTACTTGCGCCTGGATTCATAACATGGTGATCCGCACCCC
TCTCTGTCCTTTTGCGGAGAAGGTAATAAAAGACGACACCGTAAAATACG
TCGTCACCCGTGTCCGAAAGAGAAAAGAAGTTGCCGTGCTGGTGCTGGAG
GAGGCCCTCGCATTAATTGGGGTCCCTGAGACAGAGACAGCTACCACAGT
CTTGATCGCGCCTTATGCATTTGTTGAGGATTTTCCGGCATTCTACGAGA
CGGAACGGTTCCTGGAAGACCATCTAGAAGAGAGCCCATTGGGGGAGGAA
GTGCTCGTGGCGTCTTTTCACCCTCAGTACATGTTCGGTGGAGGGGTAAA
AGATGATGACCCGATTCATTATGAAAAGCGCTCCCCATATCCTGTGTTTA
ATTTGTTGAGAGCACAAAGGGTGTGGGCGTACGCGGATGAGGGTTTGACA
GAGAAGATCGCTGATAAGAACGCGGAGGCTTTGGAAGAGCTAGGGATAAA
GGAGGTGAGAAGACGGTTTGCATTGGACAAAATAGAGGTGGAGGGAGAAG
GGATAATCTGA
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Synonyms
Publications