NO03G02010, NO03G02010 (gene) Nannochloropsis oceanica

Overview
NameNO03G02010
Unique NameNO03G02010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr3:609825..610493 -

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Properties
Property NameValue
Description4-hydroxy-4-methyl-2-oxoglutarate aldolase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:609825..610493 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036704RraA/RraA-like_sf
IPR005493RNase_E_inh/diMeMenaQ_MeTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_028875073.1 (RraA family protein [Tepidiphilus margaritifer])

HSP 1 Score: 194.1 bits (492), Expect = 4.500e-46
Identity = 94/157 (59.87%), Postives = 117/157 (74.52%), Query Frame = 0
Query:   65 FATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            F TADLCD+HE +++V      RSYG   +  G + T+K FE+N LVR +L+EPG G +LV+DGGGSLRRAL GDN+A LAVKNGWAGVI+YG IRDSA + RLPLGV AL T+P K+ K+  G RDV V+F GVTF PG + YAD+DG++VS   L
Sbjct:    3 FHTADLCDAHEDRVRVL-APMLRSYGGARAAGGPVRTLKIFEDNALVREMLAEPGQGAMLVIDGGGSLRRALLGDNLAELAVKNGWAGVIVYGCIRDSAAIGRLPLGVWALATHPQKTVKRGEGQRDVPVSFGGVTFAPGMFAYADEDGVIVSDVPL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_077296774.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase [Aquaspirillum sp. LM1] >AQR64180.1 ribonuclease activity regulator protein RraA [Aquaspirillum sp. LM1])

HSP 1 Score: 193.7 bits (491), Expect = 5.900e-46
Identity = 91/157 (57.96%), Postives = 119/157 (75.80%), Query Frame = 0
Query:   65 FATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            F T DLCD+H   L+V     F+ +G  A FSG++VT+K FE+N LVR  L++PG G+VLVVDGGGSLR AL GD IA LAVKN WAG+++YG IRDS  ++ LP+GV+AL T+P+KS K+  GD ++ V F GVTFTPG ++YAD+DG++VSA AL
Sbjct:    3 FQTTDLCDAHSDHLRVV-APMFKRFGGHAQFSGQVVTLKLFEDNSLVRDTLAQPGEGRVLVVDGGGSLRCALVGDQIAELAVKNQWAGIVVYGCIRDSVAINALPIGVRALDTHPLKSIKKGVGDVEIPVTFGGVTFTPGDWLYADEDGVIVSAQAL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_011238345.1 (RraA family protein [Aromatoleum aromaticum] >Q5P203.1 RecName: Full=Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Short=HMG aldolase; AltName: Full=Oxaloacetate decarboxylase; Short=OAA decarboxylase; AltName: Full=Regulator of ribonuclease activity homolog; AltName: Full=RraA-like protein >CAI08661.1 Demethylmenaquinone methyltransferase [Aromatoleum aromaticum EbN1])

HSP 1 Score: 193.7 bits (491), Expect = 5.900e-46
Identity = 92/157 (58.60%), Postives = 118/157 (75.16%), Query Frame = 0
Query:   65 FATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            F TADLCD++E ++++     FRSYG   +F G+I T+K FE+N LVRT L  PG GKVLVVDGGGS+R AL GD +A L VKN WAGVI+YG IRDS  +  + LGV ALG++P+KS K+  GD D+ V F GVTFTPGH++YAD+DG+VVS ++L
Sbjct:    3 FQTADLCDANESRVKIV-SPMFRSYGGRGAFCGRITTLKVFEDNSLVRTALEGPGQGKVLVVDGGGSMRCALVGDQLALLGVKNQWAGVIVYGCIRDSKAIGTMELGVFALGSHPLKSIKKGAGDVDIAVTFGGVTFTPGHFIYADEDGVVVSESSL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_019918901.1 (RraA family protein [Methyloversatilis discipulorum])

HSP 1 Score: 193.4 bits (490), Expect = 7.800e-46
Identity = 89/155 (57.42%), Postives = 117/155 (75.48%), Query Frame = 0
Query:   67 TADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            TADLCD  E +L++     FRSYG  A+F G+I T+K FE+N LVR  L  PG+G+VLVVDGGGS+RRAL GD IAALAVKNGWAG+++YG IRDSA +  + +GV ALGT+P+K+ K++ G  D+ V+F G+ F PGHY+YAD DG++V   +L
Sbjct:    5 TADLCDQFESELRIC-APMFRSYGGRAAFGGQITTLKLFEDNGLVRKALEAPGDGRVLVVDGGGSMRRALVGDQIAALAVKNGWAGIVVYGCIRDSAAIGEMDIGVCALGTHPLKTVKRNEGQADLTVSFGGIDFVPGHYLYADADGVIVCPRSL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: OYW25685.1 (ribonuclease activity regulator protein RraA [Methyloversatilis sp. 12-65-5])

HSP 1 Score: 193.4 bits (490), Expect = 7.800e-46
Identity = 89/155 (57.42%), Postives = 117/155 (75.48%), Query Frame = 0
Query:   67 TADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            TADLCD  E  L++     FRS+G  ++F G I T+K +E+N LVR  L  PG+GKVLVVDGGGS+RRAL GD IA LAVKNGWAG+++YG IRDSA + ++ +GV ALGT+P+K+ K++ G  D++V+F GV F PGHY+YAD DG++VS  AL
Sbjct:    5 TADLCDQFEADLRIC-APMFRSFGGRSAFGGPIATLKLYEDNGLVRKALENPGDGKVLVVDGGGSMRRALVGDQIAELAVKNGWAGIVVYGCIRDSAAISQMNIGVMALGTHPLKTVKRNEGQSDIMVSFGGVDFVPGHYLYADGDGVIVSTRAL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: KDD75270.1 (demethylmenaquinone methyltransferase [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 192.6 bits (488), Expect = 1.300e-45
Identity = 95/167 (56.89%), Postives = 118/167 (70.66%), Query Frame = 0
Query:   65 FATADLCD---------SHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATALH 223
            FATADLCD         +    +Q+  G  FR YG   SF G I TI+C+ENNPLVR  LSEPG+G+VLVVDGG S R AL GD +AA  V+NGWAGVI+ G +RD+A++  LPLGVKALG++P+KSSK+ PG RDV V+F G TF P  +VYAD DG++V+   LH
Sbjct:    9 FATADLCDEFVTVPVDVASVGDVQIVNGQ-FRDYGGNLSFCGPISTIRCYENNPLVREALSEPGHGRVLVVDGGASQRCALLGDQLAATGVRNGWAGVIVNGCVRDTAILQTLPLGVKALGSHPLKSSKRDPGRRDVAVSFGGATFAPSAWVYADGDGVLVAPAKLH 174          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: XP_003079279.2 (Regulator of ribonuclease activity A [Ostreococcus tauri] >CEF97936.1 Regulator of ribonuclease activity A [Ostreococcus tauri])

HSP 1 Score: 192.6 bits (488), Expect = 1.300e-45
Identity = 94/169 (55.62%), Postives = 116/169 (68.64%), Query Frame = 0
Query:   65 FATADLCDSHEP------------QLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            F T+D+CD H P            +++VA  NA + YG    F G++ T+ CFENNPLVR  L EPG G+VLVVDGGGS R AL GDN+A  A +NGW+GVI+ G +RDS  + +  +GVKA+GT+P+KSSK+ PG RDV V FAGVTF PG YVYAD DGIVVS   L
Sbjct:   33 FGTSDICDVHHPGLVDDVIGTSASRVRVARANALKDYGGLRRFRGEVSTVLCFENNPLVRLALEEPGLGRVLVVDGGGSERCALLGDNLAETAARNGWSGVIVNGCVRDSEDIAKFNVGVKAIGTHPLKSSKRDPGLRDVPVTFAGVTFVPGSYVYADADGIVVSPEKL 201          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: OUS48029.1 (Demethylmenaquinone methyltransferase [Ostreococcus tauri])

HSP 1 Score: 192.6 bits (488), Expect = 1.300e-45
Identity = 94/169 (55.62%), Postives = 116/169 (68.64%), Query Frame = 0
Query:   65 FATADLCDSHEP------------QLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            F T+D+CD H P            +++VA  NA + YG    F G++ T+ CFENNPLVR  L EPG G+VLVVDGGGS R AL GDN+A  A +NGW+GVI+ G +RDS  + +  +GVKA+GT+P+KSSK+ PG RDV V FAGVTF PG YVYAD DGIVVS   L
Sbjct:   49 FGTSDICDVHHPGVVDDVIGTSASRVRVARANALKDYGGLRRFRGEVSTVLCFENNPLVRLALEEPGLGRVLVVDGGGSERCALLGDNLAETAARNGWSGVIVNGCVRDSEDIAKFNVGVKAIGTHPLKSSKRDPGLRDVPVTFAGVTFVPGSYVYADADGIVVSPEKL 217          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: KPV50752.1 (hypothetical protein SE17_25095 [Kouleothrix aurantiaca])

HSP 1 Score: 191.4 bits (485), Expect = 2.900e-45
Identity = 90/155 (58.06%), Postives = 116/155 (74.84%), Query Frame = 0
Query:   67 TADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            T DLCD+H  +LQ+A    FR +G  A+F G I T+  +E+N LVR  L E G G+VLVVDGGGSLR AL GD +  + VKNGWAG++++G +RDSA + +LPLGV+AL TNP++S K+  G RDV VAFAGVTFTPGHY+YAD DGI+V+  +L
Sbjct:    5 TTDLCDAHADELQIA-APLFRDFGGTAAFGGPISTVHVYEDNVLVRAALEEAGAGRVLVVDGGGSLRCALVGDMLGEIGVKNGWAGIVVHGCVRDSAELAQLPLGVRALATNPLRSEKRGEGQRDVPVAFAGVTFTPGHYLYADADGIIVAPRSL 158          
BLAST of NO03G02010 vs. NCBI_GenBank
Match: WP_067170157.1 (RraA family protein [Sterolibacterium denitrificans] >KYC29352.1 ribonuclease activity regulator protein RraA [Sterolibacterium denitrificans] >SMB31011.1 putative regulator of ribonuclease activity [Sterolibacterium denitrificans])

HSP 1 Score: 191.4 bits (485), Expect = 2.900e-45
Identity = 93/161 (57.76%), Postives = 117/161 (72.67%), Query Frame = 0
Query:   65 FATADLCDSHEPQLQVAE----GNAFRSYGQCASFSGKIVTIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGWAGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVTFTPGHYVYADQDGIVVSATAL 222
            FATADL D++E  L           FRSYG  A F G I T+K FE+N LVRT LS+PGNG+VLV+DGGGSLR AL GD +A LAVKNGWAG+++YG IRDS  +  + LGV AL T+P+KS K++ G+ D+ V F GV+F PGH++YAD DG++VS TAL
Sbjct:    7 FATADLLDANEAGLNAGTLHVVAPMFRSYGGRAVFGGPISTLKVFEDNSLVRTALSQPGNGRVLVIDGGGSLRCALVGDQLAELAVKNGWAGIVVYGCIRDSRAIGSMALGVFALATHPLKSIKRNVGEADLAVTFGGVSFVPGHFLYADADGVIVSQTAL 167          
The following BLAST results are available for this feature:
BLAST of NO03G02010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_028875073.14.500e-4659.87RraA family protein [Tepidiphilus margaritifer][more]
WP_077296774.15.900e-4657.96putative 4-hydroxy-4-methyl-2-oxoglutarate aldolas... [more]
WP_011238345.15.900e-4658.60RraA family protein [Aromatoleum aromaticum] >Q5P2... [more]
WP_019918901.17.800e-4657.42RraA family protein [Methyloversatilis discipuloru... [more]
OYW25685.17.800e-4657.42ribonuclease activity regulator protein RraA [Meth... [more]
KDD75270.11.300e-4556.89demethylmenaquinone methyltransferase [Helicospori... [more]
XP_003079279.21.300e-4555.62Regulator of ribonuclease activity A [Ostreococcus... [more]
OUS48029.11.300e-4555.62Demethylmenaquinone methyltransferase [Ostreococcu... [more]
KPV50752.12.900e-4558.06hypothetical protein SE17_25095 [Kouleothrix auran... [more]
WP_067170157.12.900e-4557.76RraA family protein [Sterolibacterium denitrifican... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005699NSK005699Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02010.1NO03G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571936gene_1387Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g35gene988Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02010.1NO03G02010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02010 ID=NO03G02010|Name=NO03G02010|organism=Nannochloropsis oceanica|type=gene|length=669bp
ATGCAGCGCATCGCCCTTCATTCCTTGCGACGGGTGGCACGAGCTCTTCC
TCAGCCTACTTCTTCACCTCGCGTCGTCATCTCGAGCCGGACCACCACCC
TCGCCCTCCTCCTCGCCGCATCCACTGCCAACCCTCTATGTCACTCTACC
GCCGCACACATGATGAGTTCTGTACAAGCTGTCCCCAAAATGTTTGCCAC
AGCCGATCTATGTGACAGCCACGAACCGCAGCTTCAGGTGGCGGAAGGAA
ACGCCTTTCGTTCCTATGGACAATGTGCGTCCTTCAGCGGAAAAATTGTC
ACCATCAAGTGCTTCGAGAACAATCCCTTAGTCCGCACGATTCTGAGTGA
GCCAGGAAACGGCAAAGTGTTGGTGGTCGACGGGGGAGGTTCCTTGCGCC
GGGCCTTGTTCGGTGATAACATTGCGGCATTGGCGGTGAAGAATGGGTGG
GCGGGCGTGATCATATACGGGGCGATTCGAGACTCGGCGGTGGTGGATCG
TCTGCCACTGGGGGTCAAGGCGTTGGGAACCAATCCCATCAAAAGCTCGA
AGCAGCATCCGGGGGATAGGGATGTAGTGGTGGCGTTTGCAGGGGTGACG
TTTACTCCGGGTCATTATGTCTACGCGGATCAGGATGGAATCGTGGTGTC
GGCGACGGCGCTTCATTAG
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protein sequence of NO03G02010.1

>NO03G02010.1-protein ID=NO03G02010.1-protein|Name=NO03G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MQRIALHSLRRVARALPQPTSSPRVVISSRTTTLALLLAASTANPLCHST
AAHMMSSVQAVPKMFATADLCDSHEPQLQVAEGNAFRSYGQCASFSGKIV
TIKCFENNPLVRTILSEPGNGKVLVVDGGGSLRRALFGDNIAALAVKNGW
AGVIIYGAIRDSAVVDRLPLGVKALGTNPIKSSKQHPGDRDVVVAFAGVT
FTPGHYVYADQDGIVVSATALH*
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Synonyms
Publications