NO03G02000, NO03G02000 (gene) Nannochloropsis oceanica

Overview
NameNO03G02000
Unique NameNO03G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr3:608242..609579 +

Link to JBrowse

Properties
Property NameValue
DescriptionHistone H2A
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:608242..609579 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR032454Histone_H2A_C
IPR002119Histone_H2A
Homology
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: PSC71088.1 (Histone H2A [Micractinium conductrix] >PSC71104.1 Histone H2A [Micractinium conductrix])

HSP 1 Score: 199.1 bits (505), Expect = 8.100e-48
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KKA
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKAGKKA 124
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: PSC71167.1 (Histone H2A [Micractinium conductrix] >PSC72080.1 Histone H2A [Micractinium conductrix] >PSC72168.1 Histone H2A [Micractinium conductrix] >PSC72210.1 Histone H2A [Micractinium conductrix])

HSP 1 Score: 199.1 bits (505), Expect = 8.100e-48
Identity = 103/125 (82.40%), Postives = 115/125 (92.00%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KKA
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKTGKKA 124
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: CBN77408.1 (histone H2A isoform 2 [Ectocarpus siliculosus] >CBN77453.1 histone H2A isoform 2 [Ectocarpus siliculosus] >CBN77457.1 histone H2A isoform 2 [Ectocarpus siliculosus])

HSP 1 Score: 198.7 bits (504), Expect = 1.100e-47
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+GKGK GR  GKK  +RS+KAGLQFPVGR+ RFLK+G+YA+RVG+GAPVYLAAVLEYLTAE+LELAGNAARDNKK RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH+VLLPK   KK
Sbjct:    1 MSGKGKGGR--GKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_013899880.1 (Histone H2A [Monoraphidium neglectum] >XP_013902663.1 Histone H2A [Monoraphidium neglectum] >KIZ00861.1 Histone H2A [Monoraphidium neglectum] >KIZ03644.1 Histone H2A [Monoraphidium neglectum])

HSP 1 Score: 198.7 bits (504), Expect = 1.100e-47
Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+G+GK    +GKK VSRSSKAGLQFPVGRI+R+LKKGRYA RVG+GAPVYLAAVLEYL AE+LEL+GNAARDNKK RI+PRH+QLA+RNDEEL+KLLGGVTIASGGVLPNIH VLLPKTK KK
Sbjct:    1 MSGRGKG--KSGKKPVSRSSKAGLQFPVGRIARYLKKGRYATRVGAGAPVYLAAVLEYLAAEVLELSGNAARDNKKNRIVPRHIQLAIRNDEELSKLLGGVTIASGGVLPNIHGVLLPKTKGKK 122
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_002951795.1 (histone H2A [Volvox carteri f. nagariensis] >EFJ47246.1 histone H2A [Volvox carteri f. nagariensis])

HSP 1 Score: 198.4 bits (503), Expect = 1.400e-47
Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            MAG+GK G+ AGKK VSRSSKAGLQFPVGRI+R+LKKG+YA R+G+GAPVYLAAVLEYLTAE+LELAGNAARDNKK RI+PRH+QLA+RNDEEL KLLG VTIASGGVLPNIH+VLLPK    KA
Sbjct:    1 MAGRGK-GKSAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGKA 124
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: CBJ33203.1 (histone protein [Ectocarpus siliculosus])

HSP 1 Score: 198.0 bits (502), Expect = 1.800e-47
Identity = 102/123 (82.93%), Postives = 112/123 (91.06%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAK 124
            M+GKGK GR  GKK  +RS+KAGLQFPVGR+ RFLKKG+YA+RVG+GAPVYLAAVLEYLTAE+LELAGNAARDNKK RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH+VLLPK   K
Sbjct:   46 MSGKGKGGR--GKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_005843638.1 (hypothetical protein CHLNCDRAFT_54972 [Chlorella variabilis] >XP_005843647.1 hypothetical protein CHLNCDRAFT_54989 [Chlorella variabilis] >EFN51536.1 hypothetical protein CHLNCDRAFT_54972 [Chlorella variabilis] >EFN51545.1 hypothetical protein CHLNCDRAFT_54989 [Chlorella variabilis])

HSP 1 Score: 198.0 bits (502), Expect = 1.800e-47
Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KK
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKK 123
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_005848689.1 (hypothetical protein CHLNCDRAFT_21904 [Chlorella variabilis] >EFN56587.1 hypothetical protein CHLNCDRAFT_21904 [Chlorella variabilis])

HSP 1 Score: 198.0 bits (502), Expect = 1.800e-47
Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK 125
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KK
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKSGKK 123
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: PSC72071.1 (Histone H2A [Micractinium conductrix])

HSP 1 Score: 197.6 bits (501), Expect = 2.400e-47
Identity = 102/125 (81.60%), Postives = 114/125 (91.20%), Query Frame = 0 
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            M+G+GK G+ +GKK VS+SSKAGLQFPVGRI+R+LKKGRYA R+G+GAPVYLAAVLEYL AE+LELAGNA RDNKKTRIIPRH+QLAVRNDEEL+KLL GVTIA GGVLPNIHSVLLPK   KKA
Sbjct:    1 MSGRGK-GKTSGKKAVSKSSKAGLQFPVGRIARYLKKGRYAERIGAGAPVYLAAVLEYLAAEVLELAGNATRDNKKTRIIPRHIQLAVRNDEELSKLLAGVTIAEGGVLPNIHSVLLPKKTGKKA 124
[Close]
BLAST of NO03G02000 vs. NCBI_GenBank
Match: XP_008610094.1 (histone H2A.1 [Saprolegnia diclina VS20] >XP_012204658.1 histone H2A.1 [Saprolegnia parasitica CBS 223.65] >EQC36673.1 histone H2A.1 [Saprolegnia diclina VS20] >KDO24590.1 histone H2A.1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 197.2 bits (500), Expect = 3.100e-47
Identity = 107/134 (79.85%), Postives = 117/134 (87.31%), Query Frame = 0 
Query:    1 MAGKGKA--GRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPK-----TKAKKATK 128
            M+GKGKA  GRGA  K  SRSSKAGLQFPVGR++RFLKKGR+A R+G GAPVYLAAVLEYL AEILELAGNAARDNKK+RIIPRH+QLAVRNDEELNKLLG VTIASGGVLPNIH++LLPK     TK  K+TK
Sbjct:    1 MSGKGKATGGRGAKGKASSRSSKAGLQFPVGRVARFLKKGRFAQRIGGGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGDVTIASGGVLPNIHNILLPKKTSLPTKEAKSTK 134
The following BLAST results are available for this feature:
BLAST of NO03G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PSC71088.18.100e-4882.40Histone H2A [Micractinium conductrix] >PSC71104.1 ... [more]
PSC71167.18.100e-4882.40Histone H2A [Micractinium conductrix] >PSC72080.1 ... [more]
CBN77408.11.100e-4782.26histone H2A isoform 2 [Ectocarpus siliculosus] >CB... [more]
XP_013899880.11.100e-4782.26Histone H2A [Monoraphidium neglectum] >XP_01390266... [more]
XP_002951795.11.400e-4781.60histone H2A [Volvox carteri f. nagariensis] >EFJ47... [more]
CBJ33203.11.800e-4782.93histone protein [Ectocarpus siliculosus][more]
XP_005843638.11.800e-4782.26hypothetical protein CHLNCDRAFT_54972 [Chlorella v... [more]
XP_005848689.11.800e-4782.26hypothetical protein CHLNCDRAFT_21904 [Chlorella v... [more]
PSC72071.12.400e-4781.60Histone H2A [Micractinium conductrix][more]
XP_008610094.13.100e-4779.85histone H2A.1 [Saprolegnia diclina VS20] >XP_01220... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005700NSK005700Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02000.1NO03G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571934gene_1386Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g34gene989Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02000.1NO03G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02000 ID=NO03G02000|Name=NO03G02000|organism=Nannochloropsis oceanica|type=gene|length=1338bp
TTGCCAATTCCAGGTCGCCTATGTGTATGTAGTCTTATTAGCACGCACCA
TGCCTTAAGTTTTCAAACGAGGGCCCCTAGAGTCAAATGCTAAGAATCAT
GCCTCAGCCTACCCGGCGATGTCGAGTGACGACATATACTGATCGTTATG
TGATGTTTTGGACCACAATCCAACAATTGACCAATCACATGCCGTGGCGC
TTGATAATTTTCCCAAACTCGGACCCCATGAACTGCTCCACCCACACTCC
GCATTTGATTATTTTTTCTCATCCCCAACACCGCCTCCCCGAATGCCTGC
ATGTCTCGCAGCACACGTTGCAGTGTCTCTCTCCACGCCTTTAAATGCTT
TGATGTATATGTATTTCTCTAGTTTTCAGTGAATGATCAGCATGTAGGCC
AGTGTCTTGCATTGCTGACGATTCTCATCCCTGACCCCACTTACGGGCAT
TTCAAAGAGGTCAGCACACACCCATCAACCCATCTCACATCCCACAACCC
ACACATATGGCCCAGGACACCATGTCAAGGTTTTTGCCCCCACGCCACTC
CTCTCACACACCATCAGATACAGAAAGCACCCTCACTCATCCTCCCTCCC
CACTTCTCACCCTGGAACAGAAAACCTCTCAACTTCTATAAAAAAAATGG
CTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTGTCCCGT
TCCTCGAAGGCTGGTCTCCAGTTCCCCGTGGGCCGTATCTCCCGCTTCCT
CAAGAAAGGCCGCTACGCTGCCCGCGTGGGGTCCGGTGCTCCCGTGTACC
TTGCCGCCGTCCTCGAATACCTGACGGCCGAGATCCTCGAGCTGGCCGGT
AACGCTGCCCGTGACAACAAGAAGACGCGCATTATTCCTCGCCACGTCCA
GTTGGCCGTCCGTAACGACGAGGAGCTCAACAAGCTGCTCGGTGGCGTGA
CCATTGCTTCCGGTGGTGTCCTCCCCAACATCCACTCCGTCCTCCTCCCT
AAGACCAAGGCGAAGAAGGCAACCAAGTAAATATCGACGTACAACCCACT
TAAAAAAGAGACGCTTGTCCTAGCTGGCAGCGCCCAATCCACGGTTTTTT
TAAAACCGCCCACACTGTCAATTCACTCAATATCCGCTCTTGTACCTGTT
TCTTTTGTCGCTTTTCTAGCTCCTCTCCTTACAGCCTTCTTCCCCTAGAT
TTGCTTTGGTGACAGCCTGGAAAGTGTCGAAGGAAAATGGAGGGGTATGA
GGTATGGAAAAGAAATGTGTACGAAGCCAAAACTCCGAAGAAAAAACAAC
AAAAACACACCACTGAGAAAGTATATCGCAACAGTTGG
back to top

protein sequence of NO03G02000.1

>NO03G02000.1-protein ID=NO03G02000.1-protein|Name=NO03G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKTKAKKATK*
back to top
Synonyms
Publications