NO03G02000.1, NO03G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G02000.1
Unique NameNO03G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr3:608242..609579 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:608242..609579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G02000.1 vs.
Match: EWM29644.1 (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 5.100e-58
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0
Query:    1 MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKA 126
            MAGKGK GRG+GKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKK+
Sbjct:    1 MAGKGKGGRGSGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKTKAKKS 125          
The following BLAST results are available for this feature:
BLAST of NO03G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29644.15.100e-5897.60histone-fold-containing protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G02000NO03G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G02000.1NO03G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G02000.1.cds1NO03G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G02000.1 ID=NO03G02000.1|Name=NO03G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
TTGCCAATTCCAGGTCGCCTATGTGTATGTAGTCTTATTAGCACGCACCA
TGCCTTAAGTTTTCAAACGAGGGCCCCTAGAGTCAAATGCTAAGAATCAT
GCCTCAGCCTACCCGGCGATGTCGAGTGACGACATATACTGATCGTTATG
TGATGTTTTGGACCACAATCCAACAATTGACCAATCACATGCCGTGGCGC
TTGATAATTTTCCCAAACTCGGACCCCATGAACTGCTCCACCCACACTCC
GCATTTGATTATTTTTTCTCATCCCCAACACCGCCTCCCCGAATGCCTGC
ATGTCTCGCAGCACACGTTGCAGTGTCTCTCTCCACGCCTTTAAATGCTT
TGATGTATATGTATTTCTCTAGTTTTCAGTGAATGATCAGCATGTAGGCC
AGTGTCTTGCATTGCTGACGATTCTCATCCCTGACCCCACTTACGGGCAT
TTCAAAGAGGTCAGCACACACCCATCAACCCATCTCACATCCCACAACCC
ACACATATGGCCCAGGACACCATGTCAAGGTTTTTGCCCCCACGCCACTC
CTCTCACACACCATCAGATACAGAAAGCACCCTCACTCATCCTCCCTCCC
CACTTCTCACCCTGGAACAGAAAACCTCTCAACTTCTATAAAAAAAATGG
CTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTGTCCCGT
TCCTCGAAGGCTGGTCTCCAGTTCCCCGTGGGCCGTATCTCCCGCTTCCT
CAAGAAAGGCCGCTACGCTGCCCGCGTGGGGTCCGGTGCTCCCGTGTACC
TTGCCGCCGTCCTCGAATACCTGACGGCCGAGATCCTCGAGCTGGCCGGT
AACGCTGCCCGTGACAACAAGAAGACGCGCATTATTCCTCGCCACGTCCA
GTTGGCCGTCCGTAACGACGAGGAGCTCAACAAGCTGCTCGGTGGCGTGA
CCATTGCTTCCGGTGGTGTCCTCCCCAACATCCACTCCGTCCTCCTCCCT
AAGACCAAGGCGAAGAAGGCAACCAAGTAAATATCGACGTACAACCCACT
TAAAAAAGAGACGCTTGTCCTAGCTGGCAGCGCCCAATCCACGGTTTTTT
TAAAACCGCCCACACTGTCAATTCACTCAATATCCGCTCTTGTACCTGTT
TCTTTTGTCGCTTTTCTAGCTCCTCTCCTTACAGCCTTCTTCCCCTAGAT
TTGCTTTGGTGACAGCCTGGAAAGTGTCGAAGGAAAATGGAGGGGTATGA
GGTATGGAAAAGAAATGTGTACGAAGCCAAAACTCCGAAGAAAAAACAAC
AAAAACACACCACTGAGAAAGTATATCGCAACAGTTGG
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protein sequence of NO03G02000.1

>NO03G02000.1-protein ID=NO03G02000.1-protein|Name=NO03G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKTKAKKATK*
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mRNA from alignment at chr3:608242..609579+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G02000.1 ID=NO03G02000.1|Name=NO03G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp|location=Sequence derived from alignment at chr3:608242..609579+ (Nannochloropsis oceanica)
TTGCCAATTCCAGGTCGCCTATGTGTATGTAGTCTTATTAGCACGCACCA TGCCTTAAGTTTTCAAACGAGGGCCCCTAGAGTCAAATGCTAAGAATCAT GCCTCAGCCTACCCGGCGATGTCGAGTGACGACATATACTGATCGTTATG TGATGTTTTGGACCACAATCCAACAATTGACCAATCACATGCCGTGGCGC TTGATAATTTTCCCAAACTCGGACCCCATGAACTGCTCCACCCACACTCC GCATTTGATTATTTTTTCTCATCCCCAACACCGCCTCCCCGAATGCCTGC ATGTCTCGCAGCACACGTTGCAGTGTCTCTCTCCACGCCTTTAAATGCTT TGATGTATATGTATTTCTCTAGTTTTCAGTGAATGATCAGCATGTAGGCC AGTGTCTTGCATTGCTGACGATTCTCATCCCTGACCCCACTTACGGGCAT TTCAAAGAGGTCAGCACACACCCATCAACCCATCTCACATCCCACAACCC ACACATATGGCCCAGGACACCATGTCAAGGTTTTTGCCCCCACGCCACTC CTCTCACACACCATCAGATACAGAAAGCACCCTCACTCATCCTCCCTCCC CACTTCTCACCCTGGAACAGAAAACCTCTCAACTTCTATAAAAAAAATGG CTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTGTCCCGT TCCTCGAAGGCTGGTCTCCAGTTCCCCGTGGGCCGTATCTCCCGCTTCCT CAAGAAAGGCCGCTACGCTGCCCGCGTGGGGTCCGGTGCTCCCGTGTACC TTGCCGCCGTCCTCGAATACCTGACGGCCGAGATCCTCGAGCTGGCCGGT AACGCTGCCCGTGACAACAAGAAGACGCGCATTATTCCTCGCCACGTCCA GTTGGCCGTCCGTAACGACGAGGAGCTCAACAAGCTGCTCGGTGGCGTGA CCATTGCTTCCGGTGGTGTCCTCCCCAACATCCACTCCGTCCTCCTCCCT AAGACCAAGGCGAAGAAGGCAACCAAGTAAATATCGACGTACAACCCACT TAAAAAAGAGACGCTTGTCCTAGCTGGCAGCGCCCAATCCACGGTTTTTT TAAAACCGCCCACACTGTCAATTCACTCAATATCCGCTCTTGTACCTGTT TCTTTTGTCGCTTTTCTAGCTCCTCTCCTTACAGCCTTCTTCCCCTAGAT TTGCTTTGGTGACAGCCTGGAAAGTGTCGAAGGAAAATGGAGGGGTATGA GGTATGGAAAAGAAATGTGTACGAAGCCAAAACTCCGAAGAAAAAACAAC AAAAACACACCACTGAGAAAGTATATCGCAACAGTTGG
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Coding sequence (CDS) from alignment at chr3:608242..609579+

>NO03G02000.1 ID=NO03G02000.1|Name=NO03G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=384bp|location=Sequence derived from alignment at chr3:608242..609579+ (Nannochloropsis oceanica)
ATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTGTC
CCGTTCCTCGAAGGCTGGTCTCCAGTTCCCCGTGGGCCGTATCTCCCGCT
TCCTCAAGAAAGGCCGCTACGCTGCCCGCGTGGGGTCCGGTGCTCCCGTG
TACCTTGCCGCCGTCCTCGAATACCTGACGGCCGAGATCCTCGAGCTGGC
CGGTAACGCTGCCCGTGACAACAAGAAGACGCGCATTATTCCTCGCCACG
TCCAGTTGGCCGTCCGTAACGACGAGGAGCTCAACAAGCTGCTCGGTGGC
GTGACCATTGCTTCCGGTGGTGTCCTCCCCAACATCCACTCCGTCCTCCT
CCCTAAGACCAAGGCGAAGAAGGCAACCAAGTAA
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Synonyms
Publications