NO03G01970, NO03G01970 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G01970
Unique Name	NO03G01970
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1837
Alignment location	chr3:602321..604157 -

Link to JBrowse

Properties


Property Name	Value
Description	Pescadillo homolog

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:602321..604157 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005730	nucleolus
GO:0005730	nucleolus
GO:0005654	nucleoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR036420	BRCT_dom_sf
IPR001357	BRCT_dom
IPR010613	PES

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Homology

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: EWM29641.1 (pescadillo-like protein [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 1.100e-47
Identity = 99/130 (76.15%), Postives = 108/130 (83.08%), Query Frame = 0

Query:    5 KEGEATEGGEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALP 135
            KE E   G E  E EE+ ENPD EV RRAKEEAAKATLFKGL+FFL REVPLSWVHLVLASFG  VGWEGEGSPF E + G+THQVVDRPV    R+ GREYVQPQWIFDSVNA++RLPVDLYGPG++LP
Sbjct:  395 KETEGVGGDEGEEMEEDGENPDPEVLRRAKEEAAKATLFKGLRFFLGREVPLSWVHLVLASFGGQVGWEGEGSPFAEADVGVTHQVVDRPVAAGSRRAGREYVQPQWIFDSVNARVRLPVDLYGPGKSLP 524

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: CBJ27966.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 181.8 bits (460), Expect = 3.200e-42
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 0

Query:   42 LFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLRGKA 164
            LFKGLKFF  REVP SW+ LV+ S G  VGWEGEGSPF+  + GITHQ+VDRPV  E R+  REY+QPQW+ DS+NA++ LPV  Y PG ALPPHLSPFVDD  EGY+PAYRE+LD LR  A
Sbjct:  429 LFKGLKFFFGREVPKSWLELVVTSCGGGVGWEGEGSPFSSADPGITHQIVDRPVLTEPRRKRREYLQPQWVLDSLNARVLLPVARYAPGAALPPHLSPFVDDASEGYVPAYREELDKLRSAA 550

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: XP_002900557.1 (pescadillo-like protein [Phytophthora infestans T30-4] >EEY59872.1 pescadillo-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 154.5 bits (389), Expect = 5.400e-34
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 0

Query:    5 KEGEATEG--GEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            +E EAT G   E +E         A+++   ++E ++ +LF GL FFL+REVP + + LVL S GA +GW+GEGSPF+EK   ITH ++DRP     R   REYVQPQW+FDSVN  M LP+  Y PG  LPPHLSPFV D++EGY P YR++LD L+
Sbjct:  321 EEDEATYGEMSEPLEAAFASNELAAQIYSEQRKERSEKSLFSGLTFFLSREVPAACLELVLRSHGATLGWDGEGSPFDEKNTRITHHLMDRP-HQGHRYFNREYVQPQWVFDSVNNGMLLPLTRYVPGAELPPHLSPFVSDQQEGYTPEYRKELDKLK 477

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: ETI35419.1 (hypothetical protein F443_18238 [Phytophthora parasitica P1569] >ETK75657.1 hypothetical protein L915_17763 [Phytophthora parasitica] >ETL29087.1 hypothetical protein L916_17664 [Phytophthora parasitica] >ETP05238.1 hypothetical protein F441_18113 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0

Query:    5 KEGEATEG--GEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            +E EAT G   E +E         A+++   ++E ++ +LF GL FFL+REVP   + LVL S GA +GW+GEGSPF+EK   ITH ++DRP     R   REYVQPQW+FDSVN  + LP+  Y PG  LPPHLSPFV+D++EGY P YR++LD L+
Sbjct:  341 EEEEATYGEMSEPLEAAFASNELAAQIYSEQRKERSEKSLFSGLTFFLSREVPAGCLELVLRSHGATLGWDGEGSPFDEKSTRITHHIMDRP-HQGHRYFNREYVQPQWVFDSVNNGILLPLTRYVPGAELPPHLSPFVNDQQEGYTPEYRKELDKLK 497

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: ETL82324.1 (hypothetical protein L917_17500 [Phytophthora parasitica])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0

Query:    5 KEGEATEG--GEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            +E EAT G   E +E         A+++   ++E ++ +LF GL FFL+REVP   + LVL S GA +GW+GEGSPF+EK   ITH ++DRP     R   REYVQPQW+FDSVN  + LP+  Y PG  LPPHLSPFV+D++EGY P YR++LD L+
Sbjct:  341 EEEEATYGEMSEPLEAAFASNELAAQIYSEQRKERSEKSLFSGLTFFLSREVPAGCLELVLRSHGATLGWDGEGSPFDEKSTRITHHIMDRP-HQGHRYFNREYVQPQWVFDSVNNGILLPLTRYVPGAELPPHLSPFVNDQQEGYTPEYRKELDKLK 497

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: ETM35538.1 (hypothetical protein L914_17576 [Phytophthora parasitica] >ETO64170.1 hypothetical protein F444_18264 [Phytophthora parasitica P1976])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0

Query:    5 KEGEATEG--GEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            +E EAT G   E +E         A+++   ++E ++ +LF GL FFL+REVP   + LVL S GA +GW+GEGSPF+EK   ITH ++DRP     R   REYVQPQW+FDSVN  + LP+  Y PG  LPPHLSPFV+D++EGY P YR++LD L+
Sbjct:  341 EEEEATYGEMSEPLEAAFASNELAAQIYSEQRKERSEKSLFSGLTFFLSREVPAGCLELVLRSHGATLGWDGEGSPFDEKSTRITHHIMDRP-HQGHRYFNREYVQPQWVFDSVNNGILLPLTRYVPGAELPPHLSPFVNDQQEGYTPEYRKELDKLK 497

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: XP_008912887.1 (hypothetical protein PPTG_16897 [Phytophthora parasitica INRA-310] >ETN01808.1 hypothetical protein PPTG_16897 [Phytophthora parasitica INRA-310] >KUF98969.1 hypothetical protein AM588_10010834 [Phytophthora nicotianae])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0

Query:    5 KEGEATEG--GEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            +E EAT G   E +E         A+++   ++E ++ +LF GL FFL+REVP   + LVL S GA +GW+GEGSPF+EK   ITH ++DRP     R   REYVQPQW+FDSVN  + LP+  Y PG  LPPHLSPFV+D++EGY P YR++LD L+
Sbjct:  341 EEEEATYGEMSEPLEAAFASNELAAQIYSEKRKERSEKSLFSGLTFFLSREVPAGCLELVLRSHGATLGWDGEGSPFDEKSTRITHHIMDRP-HQGHRYFNREYVQPQWVFDSVNNGILLPLTRYVPGAELPPHLSPFVNDQQEGYTPEYRKELDKLK 497

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: ETP33374.1 (hypothetical protein F442_18080 [Phytophthora parasitica P10297])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0

Query:    5 KEGEATEG--GEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            +E EAT G   E +E         A+++   ++E ++ +LF GL FFL+REVP   + LVL S GA +GW+GEGSPF+EK   ITH ++DRP     R   REYVQPQW+FDSVN  + LP+  Y PG  LPPHLSPFV+D++EGY P YR++LD L+
Sbjct:  341 EEEEATYGEISEPLEAAFASNELAAQIYSEQRKERSEKSLFSGLTFFLSREVPAGCLELVLRSHGATLGWDGEGSPFDEKSTRITHHIMDRP-HQGHRYFNREYVQPQWVFDSVNNGILLPLTRYVPGAELPPHLSPFVNDQQEGYTPEYRKELDKLK 497

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: XP_024583699.1 (pescadillo-like protein [Plasmopara halstedii] >CEG47330.1 pescadillo-like protein [Plasmopara halstedii])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 72/134 (53.73%), Postives = 98/134 (73.13%), Query Frame = 0

Query:   27 AEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            A++H   ++E ++ +LF GL FFL+REVP + + LVL S GA +GW+G GSPF+EK+  ITH ++DRP     R   REYVQPQW+FDSVN  + LP+  Y PG  LPPHLSPFV+D++EGY P YR++L+ L+
Sbjct:  370 AQIHSDEQKERSEKSLFSGLTFFLSREVPSACLELVLRSHGAQLGWDGAGSPFDEKDPRITHHIMDRP-HQGHRYFNREYVQPQWVFDSVNNGILLPLTRYLPGADLPPHLSPFVNDQQEGYTPEYRKELEKLK 502

[Close]

BLAST of NO03G01970 vs. NCBI_GenBank
Match: KUF76539.1 (Pescadillo [Phytophthora nicotianae])

HSP 1 Score: 153.3 bits (386), Expect = 1.200e-33
Identity = 80/158 (50.63%), Postives = 106/158 (67.09%), Query Frame = 0

Query:    5 KEGEATEG--GEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFLAREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGRKGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIPAYREQLDLLR 161
            +E EAT G   E +E         A+++   ++E ++ +LF GL FFL+REVP   + LVL S GA +GW+GEGSPF+EK   ITH ++DRP     R   REYVQPQW+FDSVN  + LP+  Y PG  LPPHLSPFV+D++EGY P YR++LD L+
Sbjct:  341 EEEEATYGEMSEPLEAAFASNELAAQIYSEKRKERSEKSLFSGLTFFLSREVPAGCLELVLRSHGATLGWDGEGSPFDEKSTRITHHIMDRP-HQGHRYFNREYVQPQWVFDSVNNGILLPLTRYVPGAELPPHLSPFVNDQQEGYTPEYRKELDKLK 497

The following BLAST results are available for this feature:

BLAST of NO03G01970 vs. NCBI_GenBank

BLAST of NO03G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM29641.1	1.100e-47	76.15	pescadillo-like protein [Nannochloropsis gaditana]	[more]
CBJ27966.1	3.200e-42	67.21	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_002900557.1	5.400e-34	51.27	pescadillo-like protein [Phytophthora infestans T3...	[more]
ETI35419.1	1.200e-33	50.63	hypothetical protein F443_18238 [Phytophthora para...	[more]
ETL82324.1	1.200e-33	50.63	hypothetical protein L917_17500 [Phytophthora para...	[more]
ETM35538.1	1.200e-33	50.63	hypothetical protein L914_17576 [Phytophthora para...	[more]
XP_008912887.1	1.200e-33	50.63	hypothetical protein PPTG_16897 [Phytophthora para...	[more]
ETP33374.1	1.200e-33	50.63	hypothetical protein F442_18080 [Phytophthora para...	[more]
XP_024583699.1	1.200e-33	53.73	pescadillo-like protein [Plasmopara halstedii] >CE...	[more]
KUF76539.1	1.200e-33	50.63	Pescadillo [Phytophthora nicotianae]	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL070	nonsL070	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR001	ncniR001	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR053	ngnoR053	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005703	NSK005703	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G01970.1	NO03G01970.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|549046	gene_1383	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100050g32	gene991	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G01970.1	NO03G01970.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G01970 ID=NO03G01970|Name=NO03G01970|organism=Nannochloropsis oceanica|type=gene|length=1837bp
ATGCTGCTGGGCAAGGAGGGGGAGGCGACGGAGGGAGGGGAGCAGGTCGA
GGGGGAAGAGGAGGACGAGAACCCGGATGCGGAGGTGCATCGACGCGCCA
AGGAGGAGGCAGCCAAGGCAACATTATTTAAAGGGCTGAAGTTTTTCTTG
GCCCGGGAGGTGCCCTTGTCATGGGTTCATCTGGTGCTGGCGAGTTTCGG
GGCGCTGGTTGGGTGGGAGGGAGAAGGGTCTCCGTTTAACGAGAAGGAGA
AGGGGATTACTCATCAGGTGGTTGATCGGCCGGTGCCCCTGGAGGGGAGG
AAGGGGGGGAGGGAGTATGTGCAGCCACAGTGGATCTTTGACTCGGTGAA
TGCCAAAATGCGGCTGCCGGTGGACCTGTATGGGCCCGGTAGGGCGTTGC
CAgtacgtttagggggggaaaggggcgggggggggaagaagggagggaag
gggaggagtgaaatagagggatggaaaaaggattggtgcctgcttctcct
cgttctctcgttctctcacttagacattgcgccttgtgatatttctcaag
atactgaccgttctctctccctctccttccgctctccccacccttccatt
tcttcagCCGCATCTCTCCCCCTTTGTGGACGATGAGAAAGAGGGCTATA
TCCCCGCCTACCGGGAGCAGCTCGATCTGCTCAGAGGGAAAGCTGCTGCG
ACTGTGGCTGCCGCGGCTGAGGGGGAGGGGGAGGGAGGAAATGAAAAGGC
GGAGGAAGAGAGCAGCGAGGGAGAAGAGGAGGATGAGGAGGAGGATGGGG
AGGAGGAGGAGGAGGAGGAGGATTCAGTGCAGGGTTCAAAGAAGAGGAAG
gtgagtgatgtggagggaggagggtgagaggcaggggagggacgtgtgca
ttttagaacgccttctttctcatgatcttaagagagcatcttcgcatgaa
tgacaaggacaaaggaagatagagagaagaataaagatgcgggacgatga
agcatttgcgcacataagaggtagagacaaaaaccttccagcgagaagcc
aaaccactccaaaagggggaaggcacgaaaggcaaggccaccctccttct
ccgccggcgccgtgaggcaccggcggggaaattatgggaggacaggcgtg
tcaatgcgtgcgttctgttgaccgttgggtgggagagtcagccccgggga
aaagggttgaacgtgtttcatgcatcttgttatttgaaacatggacctct
tttcctgtctttcgggggggcgggtgcacctacggtttggtcgtttcgtt
gacggatttccgtgcgcacgacgagtggttgggatgcattgcctacattt
tgagtgggaaggttgacttgatacggtgataggagagagggcgggaggga
gagagggagggaggaaggagggaaggatgaggaggggagaatttaggttg
gttccaaatattaaatgtacgttaagaggctgaattctggtgaaattggt
gaattactcaagatgcactcaccataagtcacctgaaaactttctcctgt
cgttatctaccaccccaaaacagGGCAAAAAGGGCGGGGAGGCGGAGGAA
GATGAGGAGAAAGCCTTTGCCGAGATCATGATGCCCCGCAAGCACCAACG
GGCTTACCAGGTGGCAAGACGAGGAGAGGCGAAGCAGAAAGACAAGGTGG
ATGCCCTAATGGCCAAACGCCGGAAGATCGAAGCGGCCCATGGGACCGCA
ACGACGAAGCGTGGTGCCGGGGTTGCTGGACAAGGGAAGAAGGCAAGGAA
GGAGGGGAAGAAGGGGAAGAAAGGAGAGATGAAGTAA

protein sequence of NO03G01970.1

>NO03G01970.1-protein ID=NO03G01970.1-protein|Name=NO03G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MLLGKEGEATEGGEQVEGEEEDENPDAEVHRRAKEEAAKATLFKGLKFFL
AREVPLSWVHLVLASFGALVGWEGEGSPFNEKEKGITHQVVDRPVPLEGR
KGGREYVQPQWIFDSVNAKMRLPVDLYGPGRALPPHLSPFVDDEKEGYIP
AYREQLDLLRGKAAATVAAAAEGEGEGGNEKAEEESSEGEEEDEEEDGEE
EEEEEDSVQGSKKRKGKKGGEAEEDEEKAFAEIMMPRKHQRAYQVARRGE
AKQKDKVDALMAKRRKIEAAHGTATTKRGAGVAGQGKKARKEGKKGKKGE
MK*

Synonyms

Publications