NO03G01890, NO03G01890 (gene) Nannochloropsis oceanica

Overview
NameNO03G01890
Unique NameNO03G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1531
Alignment locationchr3:581985..583515 +

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Properties
Property NameValue
DescriptionRibosomal protein L35
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:581985..583515 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR001780Ribosomal_L35A
Homology
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: CBJ32915.1 (ribosomal protein L35 [Ectocarpus siliculosus])

HSP 1 Score: 170.2 bits (430), Expect = 5.200e-39
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = 0 
Query:   61 EPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            +PVRLYVKGV+LG+KRGLR   +HT+L+KI G+++K+   FYLGKR+AYIYKAKTLKN TKYR +WGKV R HG+NGVVRAKFR NLPPKAIG PVRVMLYPS I
Sbjct:   52 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASNFYLGKRIAYIYKAKTLKNGTKYRVVWGKVCRGHGTNGVVRAKFRTNLPPKAIGAPVRVMLYPSKI 156
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: XP_009836749.1 (hypothetical protein H257_11490 [Aphanomyces astaci] >ETV73813.1 hypothetical protein H257_11490 [Aphanomyces astaci])

HSP 1 Score: 163.7 bits (413), Expect = 4.900e-37
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = 0 
Query:   59 KSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            + +P RLYVKGV +GYKRG   Q  HT+LV+I GL ++KDV FYLGKR+AYIYKAK LKN++K+R IWGKVTRAHG NGVVRAKFR+NLP  A+G PVRVMLYPS +
Sbjct:    5 EGQPTRLYVKGVFMGYKRGFTNQHAHTSLVQIQGLQDRKDVDFYLGKRIAYIYKAKALKNDSKFRVIWGKVTRAHGQNGVVRAKFRKNLPANAMGKPVRVMLYPSRV 111
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: XP_008869809.1 (hypothetical protein H310_06490 [Aphanomyces invadans] >ETW01961.1 hypothetical protein H310_06490 [Aphanomyces invadans])

HSP 1 Score: 163.3 bits (412), Expect = 6.400e-37
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 0 
Query:   59 KSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            + +P RLYVKGV +GYKRG   Q  HT+LV+I GL ++KDV FYLGKR+AYIYKAK LKN++K+R IWGK+TRAHG NGVVRAKFR+NLP  A+G PVRVMLYPS +
Sbjct:    5 EGQPTRLYVKGVFMGYKRGFTNQHAHTSLVQIQGLQDRKDVDFYLGKRIAYIYKAKALKNDSKFRVIWGKITRAHGQNGVVRAKFRKNLPANAMGKPVRVMLYPSRV 111
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: OQS06477.1 (60S ribosomal protein L35a-4 [Thraustotheca clavata])

HSP 1 Score: 163.3 bits (412), Expect = 6.400e-37
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 0 
Query:   59 KSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            + +P RLYVKGV +GYKRG   Q  HT+L++I GL ++KDV FYLGKRVAYIYKAKTLKN+TK+R IWGKVTRAHG NGVVRAKFR+NLP  A+G  VRVMLYPS +
Sbjct:    5 EGQPTRLYVKGVFMGYKRGFTNQHAHTSLIQIQGLSDRKDVDFYLGKRVAYIYKAKTLKNDTKFRVIWGKVTRAHGQNGVVRAKFRKNLPSAAMGKQVRVMLYPSRL 111
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: XP_005818688.1 (large subunit ribosomal protein L35Ae, cytoplasmic [Guillardia theta CCMP2712] >EKX31708.1 large subunit ribosomal protein L35Ae, cytoplasmic [Guillardia theta CCMP2712])

HSP 1 Score: 162.5 bits (410), Expect = 1.100e-36
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 0 
Query:   53 KMVKNMKSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            K VK  K++PVRLYVKG VLGY+RGLR Q  HT+L+KI+G+ +K    FYLGKRV YIYK +     TK+R IWG++TRAHGSNG VRAKF+RNLPPKA+GG VRVMLYPS I
Sbjct:   11 KTVKTFKTQPVRLYVKGAVLGYRRGLRNQYEHTSLIKIEGVRDKDATEFYLGKRVVYIYKGQKEIRGTKFRTIWGRITRAHGSNGTVRAKFQRNLPPKALGGSVRVMLYPSRI 123
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: CCA15530.1 (DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14])

HSP 1 Score: 161.4 bits (407), Expect = 2.400e-36
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0 
Query:   53 KMVKNMKSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            KMV +  S+P RLYVKGV LGYKRGLR Q +HT L+KI  L +KKDV FYLGK++ YIYK K +KNNTKYR IWGKV RAHG+NGVVRAKF +NLP +A+   VRVMLYPS +
Sbjct:  613 KMVAS-SSQPTRLYVKGVFLGYKRGLRNQYSHTALIKIQSLQDKKDVDFYLGKKIVYIYKGKNMKNNTKYRTIWGKVCRAHGNNGVVRAKFAKNLPAEAMSASVRVMLYPSRV 724
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: CCA15532.1 (DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14])

HSP 1 Score: 161.4 bits (407), Expect = 2.400e-36
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0 
Query:   53 KMVKNMKSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            KMV +  S+P RLYVKGV LGYKRGLR Q +HT L+KI  L +KKDV FYLGK++ YIYK K +KNNTKYR IWGKV RAHG+NGVVRAKF +NLP +A+   VRVMLYPS +
Sbjct:  608 KMVAS-SSQPTRLYVKGVFLGYKRGLRNQYSHTALIKIQSLQDKKDVDFYLGKKIVYIYKGKNMKNNTKYRTIWGKVCRAHGNNGVVRAKFAKNLPAEAMSASVRVMLYPSRV 719
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: OQR87579.1 (60S ribosomal protein L35a-4 [Achlya hypogyna])

HSP 1 Score: 161.0 bits (406), Expect = 3.200e-36
Identity = 76/107 (71.03%), Postives = 88/107 (82.24%), Query Frame = 0 
Query:   59 KSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            + +P RLYVKGV +GY RG   Q  HT+L++I GL ++KDV FYLGKRVAYIYKAKTLKN+TK+R IWGKVTRAHG NGVVRAKFR+NLP  A+G  VRVMLYPS I
Sbjct:    5 EGQPTRLYVKGVFMGYMRGFTNQHAHTSLLQIQGLQDRKDVDFYLGKRVAYIYKAKTLKNDTKFRVIWGKVTRAHGQNGVVRAKFRKNLPAAAMGKQVRVMLYPSRI 111
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: XP_008911720.1 (hypothetical protein PPTG_16133 [Phytophthora parasitica INRA-310] >ETI37496.1 hypothetical protein F443_16527 [Phytophthora parasitica P1569] >ETK77730.1 hypothetical protein L915_16054 [Phytophthora parasitica] >ETL31167.1 hypothetical protein L916_15947 [Phytophthora parasitica] >ETL84407.1 hypothetical protein L917_15748 [Phytophthora parasitica] >ETM37600.1 hypothetical protein L914_15882 [Phytophthora parasitica] >ETN03176.1 hypothetical protein PPTG_16133 [Phytophthora parasitica INRA-310] >ETO66286.1 hypothetical protein F444_16497 [Phytophthora parasitica P1976] >ETP07378.1 hypothetical protein F441_16338 [Phytophthora parasitica CJ01A1] >ETP35428.1 hypothetical protein F442_16364 [Phytophthora parasitica P10297] >KUF79000.1 60S ribosomal protein L35a [Phytophthora nicotianae])

HSP 1 Score: 160.6 bits (405), Expect = 4.100e-36
Identity = 76/105 (72.38%), Postives = 87/105 (82.86%), Query Frame = 0 
Query:   61 EPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            +P RLYVKGV LGYKRGLR Q +HT LVKI GL +KKDV FYLGK++AYIYKAK+LKN T++R IWGKV RAHGSNGVVRAKF +NLP + I   VRVMLYPS +
Sbjct:    7 QPTRLYVKGVFLGYKRGLRNQYSHTALVKIQGLTDKKDVDFYLGKKIAYIYKAKSLKNGTQFRVIWGKVMRAHGSNGVVRAKFAKNLPAEGISKSVRVMLYPSRV 111
[Close]
BLAST of NO03G01890 vs. NCBI_GenBank
Match: XP_024573476.1 (dead deah box helicase [Plasmopara halstedii] >CEG37107.1 dead deah box helicase [Plasmopara halstedii])

HSP 1 Score: 160.6 bits (405), Expect = 4.100e-36
Identity = 75/105 (71.43%), Postives = 88/105 (83.81%), Query Frame = 0 
Query:   61 EPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            +P RLYVKGV LGYKRGLR Q +HT LVKI GL +KKDV FYLGK++AYIYKAK+LKN +K+R +WGKV RAHGSNGVVRAKF +NLP +A+   VRVMLYPS +
Sbjct:  544 QPTRLYVKGVFLGYKRGLRNQYSHTALVKIQGLTDKKDVDFYLGKKIAYIYKAKSLKNGSKFRVVWGKVMRAHGSNGVVRAKFAKNLPAEAMSKSVRVMLYPSRV 648
The following BLAST results are available for this feature:
BLAST of NO03G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ32915.15.200e-3974.29ribosomal protein L35 [Ectocarpus siliculosus][more]
XP_009836749.14.900e-3770.09hypothetical protein H257_11490 [Aphanomyces astac... [more]
XP_008869809.16.400e-3769.16hypothetical protein H310_06490 [Aphanomyces invad... [more]
OQS06477.16.400e-3771.0360S ribosomal protein L35a-4 [Thraustotheca clavat... [more]
XP_005818688.11.100e-3667.26large subunit ribosomal protein L35Ae, cytoplasmic... [more]
CCA15530.12.400e-3668.14DEAD/DEAH box RNA helicase putative [Albugo laibac... [more]
CCA15532.12.400e-3668.14DEAD/DEAH box RNA helicase putative [Albugo laibac... [more]
OQR87579.13.200e-3671.0360S ribosomal protein L35a-4 [Achlya hypogyna][more]
XP_008911720.14.100e-3672.38hypothetical protein PPTG_16133 [Phytophthora para... [more]
XP_024573476.14.100e-3671.43dead deah box helicase [Plasmopara halstedii] >CEG... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005713NSK005713Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01890.1NO03G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571904gene_1374Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01890.1NO03G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01890 ID=NO03G01890|Name=NO03G01890|organism=Nannochloropsis oceanica|type=gene|length=1531bp
CCCACACACACCTTTCTTCTCTTCTGCTTTCTCATGCAGACCCCTCCGTA
CTTTCAGGCTATGGCAAAGAGTCAAGTTGTTTTTGACCTCCTGTCTGTGG
CCGCGATAATTGTGGATGGTTGAGAGGTCGCCTTACCAATGGCCAGGCAG
GCCCCTTCATTCCTCTCCCTTCTTCGCTACCCCCTTCATCAGCCGCACTC
CTTTGTAATACTTGTCAAACCCATTTCATTCCCATCCTTCCTCATAATTA
ACAGGACCTATTCAGCAGAAGCAGAGGCAGCCCCGTTGTTTAGCAAGATG
GTCAAGAACATGAAGTCAGAGgtgagtttctgcgatgtgagtgatgtgat
gagcggaggcgagagggagggggaggaggcagggcttgtacgccagatgt
cggtcgatatccggcacctttatgtggagtgctatagcggctgctgccgg
cgcattgtgtggcagctagagtgatgctgctggtaatgggagcgctgcag
ggagttgctctcttgaggatgacgtgctgcgtgctgcgcctccaggggcg
actacggcaggagatcacgtctatttcgtgggtgattgtttagagaagcc
agggcgtttgggtttcctggctgcttatttgcgctgaacgtgtgcctgct
ggggaacatgttggctgcgcactgcgtggtagcgagagggagggtagacg
ggcgccatcccgggagtcccccaggtgtaacgatggaggtaacggaggcg
tctctacccttgttccagaatacatcgggaaagtgctgggttcatcggct
cgctggcacggacacggatgtgcttggaacgggtttggtcttcgcacacc
tcgagctttggataataaatcttagtaggaagatgtctgcctgctttcac
aactcacatttactgtagagtccactcattcccttcgtcactcctatcac
tactatattatattatcctttataacacagCCCGTACGCCTGTATGTGAA
GGGTGTTGTGCTGGGATACAAACGCGGCCTCCGCGAGCAGACGAACCACA
CCAACCTGGTGAAGATCGACGGGTTGGACGAGAAGAAGGACGTGGGCTTC
TACCTGGGCAAGCGCGTGGCTTACATCTATAAGGCCAAGACGCTGAAGAA
TAACACGAAATACCGCGCGATTTGGGGCAAAGTGACCCGGGCGCACGGCA
GCAACGGCGTGGTACGTGCCAAGTTTCGACGAAACCTCCCGCCCAAGGCG
ATCGGTGGGCCCGTGCGCGTGATGCTGTACCCTTCATCAATTTAAGGAGG
AGGAGGGAGAGGTGGGAGAAACAAGGAGGGGGGGGGGGGGGGAGAGAGAC
AAGGGGAGGGGGATTCCATAATGCACACTTTCTTTGGTTTCGAATCCGTG
AGTTTCCCTCGGTAGGTGAGTGGCGTGTGTAATGGATGGCGCATGTACGT
GCCTGTGGCAGTCACAGCTCACCAGGTGCGAAGGAAAGGCAGGGGCGGAG
AAAAGGGAAATCTCAATTTGAACGGAGGAGA
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protein sequence of NO03G01890.1

>NO03G01890.1-protein ID=NO03G01890.1-protein|Name=NO03G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MARQAPSFLSLLRYPLHQPHSFVILVKPISFPSFLIINRTYSAEAEAAPL
FSKMVKNMKSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVG
FYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPK
AIGGPVRVMLYPSSI*
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Synonyms
Publications