NO03G01890.1, NO03G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01890.1
Unique NameNO03G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length872
Alignment locationchr3:581985..583515 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:581985..583515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01890.1 vs.
Match: CBJ32915.1 (ribosomal protein L35 [Ectocarpus siliculosus])

HSP 1 Score: 170.2 bits (430), Expect = 5.200e-39
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = 0 
Query:   61 EPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVGFYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPKAIGGPVRVMLYPSSI 166
            +PVRLYVKGV+LG+KRGLR   +HT+L+KI G+++K+   FYLGKR+AYIYKAKTLKN TKYR +WGKV R HG+NGVVRAKFR NLPPKAIG PVRVMLYPS I
Sbjct:   52 QPVRLYVKGVMLGFKRGLRNTYHHTSLIKIQGVEDKEASNFYLGKRIAYIYKAKTLKNGTKYRVVWGKVCRGHGTNGVVRAKFRTNLPPKAIGAPVRVMLYPSKI 156
The following BLAST results are available for this feature:
BLAST of NO03G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ32915.15.200e-3974.29ribosomal protein L35 [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01890NO03G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01890.1NO03G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01890.1.cds1NO03G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01890.1.cds2NO03G01890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01890.1 ID=NO03G01890.1|Name=NO03G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=872bp
CCCACACACACCTTTCTTCTCTTCTGCTTTCTCATGCAGACCCCTCCGTA
CTTTCAGGCTATGGCAAAGAGTCAAGTTGTTTTTGACCTCCTGTCTGTGG
CCGCGATAATTGTGGATGGTTGAGAGGTCGCCTTACCAATGGCCAGGCAG
GCCCCTTCATTCCTCTCCCTTCTTCGCTACCCCCTTCATCAGCCGCACTC
CTTTGTAATACTTGTCAAACCCATTTCATTCCCATCCTTCCTCATAATTA
ACAGGACCTATTCAGCAGAAGCAGAGGCAGCCCCGTTGTTTAGCAAGATG
GTCAAGAACATGAAGTCAGAGCCCGTACGCCTGTATGTGAAGGGTGTTGT
GCTGGGATACAAACGCGGCCTCCGCGAGCAGACGAACCACACCAACCTGG
TGAAGATCGACGGGTTGGACGAGAAGAAGGACGTGGGCTTCTACCTGGGC
AAGCGCGTGGCTTACATCTATAAGGCCAAGACGCTGAAGAATAACACGAA
ATACCGCGCGATTTGGGGCAAAGTGACCCGGGCGCACGGCAGCAACGGCG
TGGTACGTGCCAAGTTTCGACGAAACCTCCCGCCCAAGGCGATCGGTGGG
CCCGTGCGCGTGATGCTGTACCCTTCATCAATTTAAGGAGGAGGAGGGAG
AGGTGGGAGAAACAAGGAGGGGGGGGGGGGGGGAGAGAGACAAGGGGAGG
GGGATTCCATAATGCACACTTTCTTTGGTTTCGAATCCGTGAGTTTCCCT
CGGTAGGTGAGTGGCGTGTGTAATGGATGGCGCATGTACGTGCCTGTGGC
AGTCACAGCTCACCAGGTGCGAAGGAAAGGCAGGGGCGGAGAAAAGGGAA
ATCTCAATTTGAACGGAGGAGA
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protein sequence of NO03G01890.1

>NO03G01890.1-protein ID=NO03G01890.1-protein|Name=NO03G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MARQAPSFLSLLRYPLHQPHSFVILVKPISFPSFLIINRTYSAEAEAAPL
FSKMVKNMKSEPVRLYVKGVVLGYKRGLREQTNHTNLVKIDGLDEKKDVG
FYLGKRVAYIYKAKTLKNNTKYRAIWGKVTRAHGSNGVVRAKFRRNLPPK
AIGGPVRVMLYPSSI*
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mRNA from alignment at chr3:581985..583515+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01890.1 ID=NO03G01890.1|Name=NO03G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp|location=Sequence derived from alignment at chr3:581985..583515+ (Nannochloropsis oceanica)
CCCACACACACCTTTCTTCTCTTCTGCTTTCTCATGCAGACCCCTCCGTA
CTTTCAGGCTATGGCAAAGAGTCAAGTTGTTTTTGACCTCCTGTCTGTGG
CCGCGATAATTGTGGATGGTTGAGAGGTCGCCTTACCAATGGCCAGGCAG
GCCCCTTCATTCCTCTCCCTTCTTCGCTACCCCCTTCATCAGCCGCACTC
CTTTGTAATACTTGTCAAACCCATTTCATTCCCATCCTTCCTCATAATTA
ACAGGACCTATTCAGCAGAAGCAGAGGCAGCCCCGTTGTTTAGCAAGATG
GTCAAGAACATGAAGTCAGAGGTGAGTTTCTGCGATGTGAGTGATGTGAT
GAGCGGAGGCGAGAGGGAGGGGGAGGAGGCAGGGCTTGTACGCCAGATGT
CGGTCGATATCCGGCACCTTTATGTGGAGTGCTATAGCGGCTGCTGCCGG
CGCATTGTGTGGCAGCTAGAGTGATGCTGCTGGTAATGGGAGCGCTGCAG
GGAGTTGCTCTCTTGAGGATGACGTGCTGCGTGCTGCGCCTCCAGGGGCG
ACTACGGCAGGAGATCACGTCTATTTCGTGGGTGATTGTTTAGAGAAGCC
AGGGCGTTTGGGTTTCCTGGCTGCTTATTTGCGCTGAACGTGTGCCTGCT
GGGGAACATGTTGGCTGCGCACTGCGTGGTAGCGAGAGGGAGGGTAGACG
GGCGCCATCCCGGGAGTCCCCCAGGTGTAACGATGGAGGTAACGGAGGCG
TCTCTACCCTTGTTCCAGAATACATCGGGAAAGTGCTGGGTTCATCGGCT
CGCTGGCACGGACACGGATGTGCTTGGAACGGGTTTGGTCTTCGCACACC
TCGAGCTTTGGATAATAAATCTTAGTAGGAAGATGTCTGCCTGCTTTCAC
AACTCACATTTACTGTAGAGTCCACTCATTCCCTTCGTCACTCCTATCAC
TACTATATTATATTATCCTTTATAACACAGCCCGTACGCCTGTATGTGAA
GGGTGTTGTGCTGGGATACAAACGCGGCCTCCGCGAGCAGACGAACCACA
CCAACCTGGTGAAGATCGACGGGTTGGACGAGAAGAAGGACGTGGGCTTC
TACCTGGGCAAGCGCGTGGCTTACATCTATAAGGCCAAGACGCTGAAGAA
TAACACGAAATACCGCGCGATTTGGGGCAAAGTGACCCGGGCGCACGGCA
GCAACGGCGTGGTACGTGCCAAGTTTCGACGAAACCTCCCGCCCAAGGCG
ATCGGTGGGCCCGTGCGCGTGATGCTGTACCCTTCATCAATTTAAGGAGG
AGGAGGGAGAGGTGGGAGAAACAAGGAGGGGGGGGGGGGGGGAGAGAGAC
AAGGGGAGGGGGATTCCATAATGCACACTTTCTTTGGTTTCGAATCCGTG
AGTTTCCCTCGGTAGGTGAGTGGCGTGTGTAATGGATGGCGCATGTACGT
GCCTGTGGCAGTCACAGCTCACCAGGTGCGAAGGAAAGGCAGGGGCGGAG
AAAAGGGAAATCTCAATTTGAACGGAGGAGA
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Coding sequence (CDS) from alignment at chr3:581985..583515+

>NO03G01890.1 ID=NO03G01890.1|Name=NO03G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr3:581985..583515+ (Nannochloropsis oceanica)
ATGGCCAGGCAGGCCCCTTCATTCCTCTCCCTTCTTCGCTACCCCCTTCA
TCAGCCGCACTCCTTTGTAATACTTGTCAAACCCATTTCATTCCCATCCT
TCCTCATAATTAACAGGACCTATTCAGCAGAAGCAGAGGCAGCCCCGTTG
TTTAGCAAGATGGTCAAGAACATGAAGTCAGAGCCCGTACGCCTGTATGT
GAAGGGTGTTGTGCTGGGATACAAACGCGGCCTCCGCGAGCAGACGAACC
ACACCAACCTGGTGAAGATCGACGGGTTGGACGAGAAGAAGGACGTGGGC
TTCTACCTGGGCAAGCGCGTGGCTTACATCTATAAGGCCAAGACGCTGAA
GAATAACACGAAATACCGCGCGATTTGGGGCAAAGTGACCCGGGCGCACG
GCAGCAACGGCGTGGTACGTGCCAAGTTTCGACGAAACCTCCCGCCCAAG
GCGATCGGTGGGCCCGTGCGCGTGATGCTGTACCCTTCATCAATTTAA
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Synonyms
Publications