NO03G01790, NO03G01790 (gene) Nannochloropsis oceanica

Overview
NameNO03G01790
Unique NameNO03G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1031
Alignment locationchr3:559205..560235 +

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Properties
Property NameValue
DescriptionV-type proton ATPase subunit F
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:559205..560235 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036906ATPase_V1_fsu_sf
IPR008218ATPase_V1-cplx_f_g_su
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Homology
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: OQR83041.1 (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Achlya hypogyna])

HSP 1 Score: 165.6 bits (418), Expect = 9.200e-38
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 0 
Query:    4 EDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            E  KLV VIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP SV+E+AF ++  RDDI I+LINQHIA EIRH++ AY +TIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    2 EGTKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFRKLSSRDDIAIILINQHIAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 112
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_008878657.1 (V-type ATPase, F subunit [Aphanomyces invadans] >ETV92621.1 V-type ATPase, F subunit [Aphanomyces invadans])

HSP 1 Score: 165.2 bits (417), Expect = 1.200e-37
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0 
Query:    4 EDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            E  KLV +IGDEDTVTGF+LAGVGHR+ EG NFLVVK +TP SV+E+AF R+  RDDI I+LINQHIA EIRH++ +Y KTIPT+LEIPSKD PYDP +D IM+RV +M G
Sbjct:    2 EGTKLVGIIGDEDTVTGFILAGVGHRSPEGTNFLVVKQNTPVSVIEDAFKRLSTRDDIAIILINQHIAEEIRHLLNSYEKTIPTILEIPSKDMPYDPAKDYIMKRVNMMLG 112
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_002900892.1 (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Phytophthora infestans T30-4] >EEY59699.1 H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 164.1 bits (414), Expect = 2.700e-37
Identity = 77/109 (70.64%), Postives = 88/109 (80.73%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGG 116
            KL+AVIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP S +E +F  +  RDDI I+LINQH+A EIRH++  Y KTIPTVLEIPSKD PYDP +D IM+RV LM GG
Sbjct:    6 KLIAVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPSTPISAIEASFRTLSSRDDIAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLGG 114
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_009521590.1 (hypothetical protein PHYSODRAFT_297626 [Phytophthora sojae] >EGZ26302.1 hypothetical protein PHYSODRAFT_297626 [Phytophthora sojae])

HSP 1 Score: 162.9 bits (411), Expect = 5.900e-37
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KL+AVIGDEDTVTGF+LAG+GHRT EG NFLVVK+ TP S +E +F  + +RDDI I+LINQH+A EIRH++  Y KTIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    6 KLIAVIGDEDTVTGFILAGIGHRTAEGTNFLVVKSSTPISAIEASFRSLSNRDDIAIILINQHVAEEIRHLLNTYEKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_008896096.1 (V-type ATPase, F subunit [Phytophthora parasitica INRA-310] >ETI36244.1 V-type ATPase, F subunit [Phytophthora parasitica P1569] >ETK76435.1 V-type ATPase, F subunit [Phytophthora parasitica] >ETL29875.1 V-type ATPase, F subunit [Phytophthora parasitica] >ETL83102.1 V-type ATPase, F subunit [Phytophthora parasitica] >ETM36331.1 V-type ATPase, F subunit [Phytophthora parasitica] >ETN18421.1 V-type ATPase, F subunit [Phytophthora parasitica INRA-310] >ETO64938.1 V-type ATPase, F subunit [Phytophthora parasitica P1976] >ETP06038.1 V-type ATPase, F subunit [Phytophthora parasitica CJ01A1] >ETP34145.1 V-type ATPase, F subunit [Phytophthora parasitica P10297] >KUF72078.1 H-or Na-translocating F-type [Phytophthora nicotianae] >KUF97231.1 Myb protein J [Phytophthora nicotianae])

HSP 1 Score: 161.8 bits (408), Expect = 1.300e-36
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KL+AVIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP S +E +F  +  RDDI I+LINQH+A EIRH++  Y KTIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    6 KLIAVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPSTPISAIEASFRSLSSRDDIAIILINQHVAEEIRHLLNTYDKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: POM70509.1 (V-type ATPase, F subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 161.8 bits (408), Expect = 1.300e-36
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KL+AVIGDEDTVTGF+LAG+GHRT EG NFLVVK  TP S +E +F  + +RDDI I+LINQH+A EIRH++  Y KTIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    6 KLIAVIGDEDTVTGFILAGIGHRTAEGTNFLVVKPSTPISAIEASFRSLSNRDDIAIILINQHVAEEIRHLLNTYEKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: OWZ15700.1 (V-type ATPase, F subunit [Phytophthora megakarya])

HSP 1 Score: 160.6 bits (405), Expect = 2.900e-36
Identity = 75/108 (69.44%), Postives = 87/108 (80.56%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KL+AVIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP S +E +F  + +RDDI I+LINQH+  EIRH++  Y KTIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    6 KLIAVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPSTPISAIEASFRTLSNRDDIAIILINQHVPEEIRHLLNTYDKTIPTVLEIPSKDSPYDPSKDYIMKRVNLMLG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: POM64979.1 (V-type ATPase, F subunit [Phytophthora palmivora var. palmivora])

HSP 1 Score: 160.6 bits (405), Expect = 2.900e-36
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KL+AVIGDEDTVTGF+LAG+GHRT EG NFLVVK  TP + +E +F  + +RDDI I+LINQH+A EIRH++  Y KTIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    6 KLIAVIGDEDTVTGFILAGIGHRTAEGTNFLVVKPSTPIAAIEASFRSLSNRDDIAIILINQHVAEEIRHLLNTYEKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_024584860.1 (v-type f subunit [Plasmopara halstedii] >CEG48491.1 v-type f subunit [Plasmopara halstedii])

HSP 1 Score: 159.1 bits (401), Expect = 8.600e-36
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KL+AVIGDEDTVTGF+LAG+GHRT  G NFLVVK  TP S +E  F  +  RDDI I+LINQH+A EIRH++  Y KTIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    6 KLIAVIGDEDTVTGFILAGIGHRTANGTNFLVVKPSTPISTIEATFRSLSSRDDIAIILINQHVAEEIRHLLNTYEKTIPTVLEIPSKDSPYDPAKDYIMKRVNLMLG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: CCA20450.1 (H or Na translocating Ftype putative [Albugo laibachii Nc14])

HSP 1 Score: 158.3 bits (399), Expect = 1.500e-35
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KLVAVIGDEDTVTGF+LAG+GHRT EG+NFLVV ++TP SV+E  F  +  RDDI I+LI Q IA EIRH++ AY KTIPT+LEIPSKD PYDP +D IM+RV LM G
Sbjct:    6 KLVAVIGDEDTVTGFILAGIGHRTAEGSNFLVVNSNTPISVIESTFRTLTTRDDIAILLITQQIAEEIRHLLTAYDKTIPTILEIPSKDAPYDPAKDYIMKRVNLMLG 113
The following BLAST results are available for this feature:
BLAST of NO03G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR83041.19.200e-3872.07H - or Na -translocating F-type, V-type and A-type... [more]
XP_008878657.11.200e-3769.37V-type ATPase, F subunit [Aphanomyces invadans] >E... [more]
XP_002900892.12.700e-3770.64H - or Na -translocating F-type, V-type and A-type... [more]
XP_009521590.15.900e-3769.44hypothetical protein PHYSODRAFT_297626 [Phytophtho... [more]
XP_008896096.11.300e-3670.37V-type ATPase, F subunit [Phytophthora parasitica ... [more]
POM70509.11.300e-3669.44V-type ATPase, F subunit [Phytophthora palmivora v... [more]
OWZ15700.12.900e-3669.44V-type ATPase, F subunit [Phytophthora megakarya][more]
POM64979.12.900e-3668.52V-type ATPase, F subunit [Phytophthora palmivora v... [more]
XP_024584860.18.600e-3668.52v-type f subunit [Plasmopara halstedii] >CEG48491.... [more]
CCA20450.11.500e-3569.44H or Na translocating Ftype putative [Albugo laiba... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005722NSK005722Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01790.1NO03G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535366gene_1364Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g11gene1008Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01790.1NO03G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01790 ID=NO03G01790|Name=NO03G01790|organism=Nannochloropsis oceanica|type=gene|length=1031bp
CAGGCACTCCAATACTATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGA
TTGGGGACGAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCAC
CGTACGATGGAAGGCGCCAATTTTTTGGTCGTCAAGAATGgtatttgttg
gggaaaggggacgggaaagcaaggaaatagcacgcgcgcgcatacacact
ctcacacttacactctcacacacatgcatcaccctgcatacgtacagATA
CACCAGCGTCGGTGGTGGAGGAGGCGTTCAACAGGATGGTGGACCGGGAT
GACATCGGCATTGTGCTCATCAACCAGCACgtacgtccctcaggggaaga
aggggagggagtgagggagtggagtgaggagggggcatgtagcaaccaat
tttctcaagcagcctacctgggaagggaaagcaaagaagtttctcgatct
cacctctgtgtggcattcaccgtcgcctaatcttttcccttcctaactcc
atacctccagATTGCCAACGAGATCCGACACGTGATCAGGGCCTACTCCA
AGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCgtgcgta
cccctctccctccctccctccctccctcccttcctcccttcaatccccct
tatcttccccccccctctcctccgcttccgatctttacttgtgccatggc
gtccatctctcttctcaactctcctattcctctcttccctctcaccttca
tagGTATGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGA
CGGGCGGGGCAATGTAGAGAAGGAGAAAGAGAGGCAGGGAGGCTTGTCGG
TGTATACAGAAAAGGTGAGATAAAAAAATACTGAAAAGGAAAGGGAGAGG
AAAGGAAGGAGGAAATATTATCGCCCGAGTGAGTGAGAGTGAGGAGGAGA
TACGGACACGTGGTGGGCTTAAAAGAAAGAAGGCGAGATGCCAAGAAATG
GGAAGGAAGCAACAAGCTAGCGACCAAGCAG
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protein sequence of NO03G01790.1

>NO03G01790.1-protein ID=NO03G01790.1-protein|Name=NO03G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MADEDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEE
AFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDP
EEDSIMQRVTLMTGGAM*
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Synonyms
Publications