NO03G01790.1, NO03G01790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01790.1
Unique NameNO03G01790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length584
Alignment locationchr3:559205..560235 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:559205..560235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01790.1 vs.
Match: EWM29637.1 (vacuolar atp synthase subunit f [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 2.500e-51
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 0 
Query:    1 MADEDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGGAM 118
            MA+EDGKLV VIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTP S+VEE FNR+ +RDDIGIVLINQHIAN+IRHVI+ Y++TIPTVLEIPSKDHPYDPE DSIMQRV LMTGG M
Sbjct:    1 MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117
The following BLAST results are available for this feature:
BLAST of NO03G01790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29637.12.500e-5186.32vacuolar atp synthase subunit f [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01790NO03G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01790.1NO03G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01790.1.cds1NO03G01790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01790.1.cds2NO03G01790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01790.1.cds3NO03G01790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01790.1.cds4NO03G01790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01790.1 ID=NO03G01790.1|Name=NO03G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=584bp
CAGGCACTCCAATACTATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGA
TTGGGGACGAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCAC
CGTACGATGGAAGGCGCCAATTTTTTGGTCGTCAAGAATGATACACCAGC
GTCGGTGGTGGAGGAGGCGTTCAACAGGATGGTGGACCGGGATGACATCG
GCATTGTGCTCATCAACCAGCACATTGCCAACGAGATCCGACACGTGATC
AGGGCCTACTCCAAGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGA
CCACCCGTATGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCA
TGACGGGCGGGGCAATGTAGAGAAGGAGAAAGAGAGGCAGGGAGGCTTGT
CGGTGTATACAGAAAAGGTGAGATAAAAAAATACTGAAAAGGAAAGGGAG
AGGAAAGGAAGGAGGAAATATTATCGCCCGAGTGAGTGAGAGTGAGGAGG
AGATACGGACACGTGGTGGGCTTAAAAGAAAGAAGGCGAGATGCCAAGAA
ATGGGAAGGAAGCAACAAGCTAGCGACCAAGCAG
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protein sequence of NO03G01790.1

>NO03G01790.1-protein ID=NO03G01790.1-protein|Name=NO03G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MADEDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEE
AFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDP
EEDSIMQRVTLMTGGAM*
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mRNA from alignment at chr3:559205..560235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01790.1 ID=NO03G01790.1|Name=NO03G01790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp|location=Sequence derived from alignment at chr3:559205..560235+ (Nannochloropsis oceanica)
CAGGCACTCCAATACTATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGA
TTGGGGACGAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCAC
CGTACGATGGAAGGCGCCAATTTTTTGGTCGTCAAGAATGGTATTTGTTG
GGGAAAGGGGACGGGAAAGCAAGGAAATAGCACGCGCGCGCATACACACT
CTCACACTTACACTCTCACACACATGCATCACCCTGCATACGTACAGATA
CACCAGCGTCGGTGGTGGAGGAGGCGTTCAACAGGATGGTGGACCGGGAT
GACATCGGCATTGTGCTCATCAACCAGCACGTACGTCCCTCAGGGGAAGA
AGGGGAGGGAGTGAGGGAGTGGAGTGAGGAGGGGGCATGTAGCAACCAAT
TTTCTCAAGCAGCCTACCTGGGAAGGGAAAGCAAAGAAGTTTCTCGATCT
CACCTCTGTGTGGCATTCACCGTCGCCTAATCTTTTCCCTTCCTAACTCC
ATACCTCCAGATTGCCAACGAGATCCGACACGTGATCAGGGCCTACTCCA
AGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCGTGCGTA
CCCCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCAATCCCCCT
TATCTTCCCCCCCCCTCTCCTCCGCTTCCGATCTTTACTTGTGCCATGGC
GTCCATCTCTCTTCTCAACTCTCCTATTCCTCTCTTCCCTCTCACCTTCA
TAGGTATGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGA
CGGGCGGGGCAATGTAGAGAAGGAGAAAGAGAGGCAGGGAGGCTTGTCGG
TGTATACAGAAAAGGTGAGATAAAAAAATACTGAAAAGGAAAGGGAGAGG
AAAGGAAGGAGGAAATATTATCGCCCGAGTGAGTGAGAGTGAGGAGGAGA
TACGGACACGTGGTGGGCTTAAAAGAAAGAAGGCGAGATGCCAAGAAATG
GGAAGGAAGCAACAAGCTAGCGACCAAGCAG
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Coding sequence (CDS) from alignment at chr3:559205..560235+

>NO03G01790.1 ID=NO03G01790.1|Name=NO03G01790.1|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at chr3:559205..560235+ (Nannochloropsis oceanica)
ATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGATTGGGGACGAGGACAC
CGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCACCGTACGATGGAAGGCG
CCAATTTTTTGGTCGTCAAGAATGATACACCAGCGTCGGTGGTGGAGGAG
GCGTTCAACAGGATGGTGGACCGGGATGACATCGGCATTGTGCTCATCAA
CCAGCACATTGCCAACGAGATCCGACACGTGATCAGGGCCTACTCCAAGA
CCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCGTATGACCCC
GAAGAGGACAGTATCATGCAACGCGTCACCCTCATGACGGGCGGGGCAAT
GTAG
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Synonyms
Publications