NO03G01790, NO03G01790 (gene) Nannochloropsis oceanica

Overview
NameNO03G01790
Unique NameNO03G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1031
Alignment locationchr3:559205..560235 +

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Properties
Property NameValue
DescriptionV-type proton ATPase subunit F
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:559205..560235 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036906ATPase_V1_fsu_sf
IPR008218ATPase_V1-cplx_f_g_su
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Homology
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: EWM29637.1 (vacuolar atp synthase subunit f [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 2.500e-51
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 0 
Query:    1 MADEDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGGAM 118
            MA+EDGKLV VIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTP S+VEE FNR+ +RDDIGIVLINQHIAN+IRHVI+ Y++TIPTVLEIPSKDHPYDPE DSIMQRV LMTGG M
Sbjct:    1 MAEEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIKNYTQTIPTVLEIPSKDHPYDPEADSIMQRVNLMTGGQM 117
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: CBJ29345.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 179.1 bits (453), Expect = 8.000e-42
Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 0 
Query:    3 DEDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            DE GKL+A+IGDEDTVTGFLLAGVGHRT+   NFLVVKNDT  S +E+AFNR+  RDDI IVLINQH+ANEIRH++ +YSKTIPTVLEIPSKD PYDPE+D IMQR+ +M G
Sbjct:    2 DESGKLIAIIGDEDTVTGFLLAGVGHRTVNTTNFLVVKNDTTVSQIEDAFNRLTARDDIAIVLINQHVANEIRHLLGSYSKTIPTVLEIPSKDVPYDPEQDYIMQRINMMLG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: OEU11518.1 (vacuolar ATP synthase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 174.5 bits (441), Expect = 2.000e-40
Identity = 81/112 (72.32%), Postives = 95/112 (84.82%), Query Frame = 0 
Query:    4 EDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGG 116
            E GKLVAVIGDEDTVTGFLLAGVGHRT  G+NFL+VK DTP   VEEAF     RDD+GI+LINQHIA++IRH+++ Y++TIPTVLEIPSK+HPYDPE+D IMQRV +  GG
Sbjct:    2 EAGKLVAVIGDEDTVTGFLLAGVGHRTAHGSNFLIVKQDTPLQQVEEAFQSFSTRDDVGIILINQHIASDIRHILKDYNETIPTVLEIPSKEHPYDPEQDYIMQRVNMYLGG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_002185287.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43156.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 174.1 bits (440), Expect = 2.600e-40
Identity = 80/114 (70.18%), Postives = 95/114 (83.33%), Query Frame = 0 
Query:    4 EDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGGAM 118
            E GKL+AVIGDEDTVTGFLLAGVGHRT +G+NFL+VK DT    VEEAF     RDD+GI+LINQH+AN+IRH+++ Y +TIPTVLEIPSK+HPYDPE+D IMQRV +  GG M
Sbjct:    2 EVGKLIAVIGDEDTVTGFLLAGVGHRTADGSNFLIVKQDTKLQQVEEAFQNFSVRDDVGIILINQHVANDIRHILKDYHETIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGGGM 115
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: GAX22774.1 (V-type H+-transporting ATPase subunit F [Fistulifera solaris])

HSP 1 Score: 171.0 bits (432), Expect = 2.200e-39
Identity = 81/112 (72.32%), Postives = 93/112 (83.04%), Query Frame = 0 
Query:    4 EDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGG 116
            E GKLVAVIGDEDTVTGFLLAGVGHRT +G+NFLVVK DT    +EEAF +   R+D+GI+LINQHIAN IRHV++ Y  TIPTVLEIPSK+HPYDPE+D IMQRV +  GG
Sbjct:   84 EVGKLVAVIGDEDTVTGFLLAGVGHRTAQGSNFLVVKPDTKLQSIEEAFQQFSTREDVGIILINQHIANNIRHVLKDYHSTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 195
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: GAX19804.1 (V-type H+-transporting ATPase subunit F [Fistulifera solaris])

HSP 1 Score: 171.0 bits (432), Expect = 2.200e-39
Identity = 81/112 (72.32%), Postives = 93/112 (83.04%), Query Frame = 0 
Query:    4 EDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGG 116
            E GKLVAVIGDEDTVTGFLLAGVGHRT +G+NFLVVK DT    +EEAF +   R+D+GI+LINQHIAN IRHV++ Y  TIPTVLEIPSK+HPYDPE+D IMQRV +  GG
Sbjct:    2 EVGKLVAVIGDEDTVTGFLLAGVGHRTAQGSNFLVVKPDTKLQSIEEAFQQFSTREDVGIILINQHIANNIRHVLKDYHSTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 113
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_002294299.1 (v-type H+ transporting ATPase, partial [Thalassiosira pseudonana CCMP1335] >EED88654.1 v-type H+ transporting ATPase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 169.9 bits (429), Expect = 4.900e-39
Identity = 76/110 (69.09%), Postives = 91/110 (82.73%), Query Frame = 0 
Query:    6 GKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTGG 116
            GKLVAVIGDEDTVTGFLLAG+GHRT +  NFL+VK DTP  V+E        RDDIGI+LINQH+AN++RHV++ Y++TIPTVLEIPSK+HPYDPE+D IMQRV +  GG
Sbjct:    1 GKLVAVIGDEDTVTGFLLAGIGHRTADSTNFLIVKQDTPTPVIESTLKAFTQRDDIGIILINQHVANDMRHVLKDYNQTIPTVLEIPSKEHPYDPEQDYIMQRVNMFLGG 110
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_009829458.1 (V-type ATPase, F subunit [Aphanomyces astaci] >ETV81600.1 V-type ATPase, F subunit [Aphanomyces astaci])

HSP 1 Score: 167.2 bits (422), Expect = 3.100e-38
Identity = 80/108 (74.07%), Postives = 91/108 (84.26%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KLV VIGDEDTVTGF+LAGVGHR+ EG NFLVVK +TP SV+E+AF R+  RDDI I+LINQHIA EIRH++ AY KTIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    5 KLVGVIGDEDTVTGFILAGVGHRSPEGTNFLVVKQNTPISVIEDAFKRLSTRDDIAIILINQHIAEEIRHLLNAYDKTIPTVLEIPSKDMPYDPAKDYIMKRVNLMLG 112
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: XP_008610698.1 (V-type ATPase, F subunit [Saprolegnia diclina VS20] >XP_012199222.1 V-type ATPase [Saprolegnia parasitica CBS 223.65] >EQC35936.1 V-type ATPase, F subunit [Saprolegnia diclina VS20] >KDO30041.1 V-type ATPase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 166.0 bits (419), Expect = 7.000e-38
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 0 
Query:    7 KLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            KLV VIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP SV+E+AF R+  RDDI I+LINQH+A EIRH++ AY +TIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    8 KLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFKRLSSRDDIAIILINQHVAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 115
[Close]
BLAST of NO03G01790 vs. NCBI_GenBank
Match: OQR81622.1 (H - or Na -translocating F-type, V-type and A-type ATPase (F-ATPase) Superfamily [Thraustotheca clavata])

HSP 1 Score: 165.6 bits (418), Expect = 9.200e-38
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 0 
Query:    4 EDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEEAFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDPEEDSIMQRVTLMTG 115
            ++ KLV VIGDEDTVTGF+LAGVGHRT EG NFLVVK  TP SV+E+AF ++  RDDI I+LINQH+A EIRH++ AY +TIPTVLEIPSKD PYDP +D IM+RV LM G
Sbjct:    2 DNTKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFKKLTSRDDIAIILINQHVAEEIRHLLNAYEQTIPTVLEIPSKDLPYDPSKDYIMKRVNLMLG 112
The following BLAST results are available for this feature:
BLAST of NO03G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29637.12.500e-5186.32vacuolar atp synthase subunit f [Nannochloropsis g... [more]
CBJ29345.18.000e-4275.00conserved unknown protein [Ectocarpus siliculosus][more]
OEU11518.12.000e-4072.32vacuolar ATP synthase [Fragilariopsis cylindrus CC... [more]
XP_002185287.12.600e-4070.18predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX22774.12.200e-3972.32V-type H+-transporting ATPase subunit F [Fistulife... [more]
GAX19804.12.200e-3972.32V-type H+-transporting ATPase subunit F [Fistulife... [more]
XP_002294299.14.900e-3969.09v-type H+ transporting ATPase, partial [Thalassios... [more]
XP_009829458.13.100e-3874.07V-type ATPase, F subunit [Aphanomyces astaci] >ETV... [more]
XP_008610698.17.000e-3873.15V-type ATPase, F subunit [Saprolegnia diclina VS20... [more]
OQR81622.19.200e-3870.27H - or Na -translocating F-type, V-type and A-type... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005722NSK005722Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01790.1NO03G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535366gene_1364Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g11gene1008Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01790.1NO03G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01790 ID=NO03G01790|Name=NO03G01790|organism=Nannochloropsis oceanica|type=gene|length=1031bp
CAGGCACTCCAATACTATGGCGGACGAGGACGGCAAGCTGGTGGCTGTGA
TTGGGGACGAGGACACCGTCACAGGCTTTTTGTTGGCGGGTGTGGGGCAC
CGTACGATGGAAGGCGCCAATTTTTTGGTCGTCAAGAATGgtatttgttg
gggaaaggggacgggaaagcaaggaaatagcacgcgcgcgcatacacact
ctcacacttacactctcacacacatgcatcaccctgcatacgtacagATA
CACCAGCGTCGGTGGTGGAGGAGGCGTTCAACAGGATGGTGGACCGGGAT
GACATCGGCATTGTGCTCATCAACCAGCACgtacgtccctcaggggaaga
aggggagggagtgagggagtggagtgaggagggggcatgtagcaaccaat
tttctcaagcagcctacctgggaagggaaagcaaagaagtttctcgatct
cacctctgtgtggcattcaccgtcgcctaatcttttcccttcctaactcc
atacctccagATTGCCAACGAGATCCGACACGTGATCAGGGCCTACTCCA
AGACCATCCCAACCGTCCTCGAAATCCCTTCGAAAGACCACCCgtgcgta
cccctctccctccctccctccctccctcccttcctcccttcaatccccct
tatcttccccccccctctcctccgcttccgatctttacttgtgccatggc
gtccatctctcttctcaactctcctattcctctcttccctctcaccttca
tagGTATGACCCCGAAGAGGACAGTATCATGCAACGCGTCACCCTCATGA
CGGGCGGGGCAATGTAGAGAAGGAGAAAGAGAGGCAGGGAGGCTTGTCGG
TGTATACAGAAAAGGTGAGATAAAAAAATACTGAAAAGGAAAGGGAGAGG
AAAGGAAGGAGGAAATATTATCGCCCGAGTGAGTGAGAGTGAGGAGGAGA
TACGGACACGTGGTGGGCTTAAAAGAAAGAAGGCGAGATGCCAAGAAATG
GGAAGGAAGCAACAAGCTAGCGACCAAGCAG
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protein sequence of NO03G01790.1

>NO03G01790.1-protein ID=NO03G01790.1-protein|Name=NO03G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MADEDGKLVAVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPASVVEE
AFNRMVDRDDIGIVLINQHIANEIRHVIRAYSKTIPTVLEIPSKDHPYDP
EEDSIMQRVTLMTGGAM*
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Synonyms
Publications