NO03G01490, NO03G01490 (gene) Nannochloropsis oceanica

Overview
NameNO03G01490
Unique NameNO03G01490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr3:453409..454506 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrna rrna methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:453409..454506 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
GO:0016740transferase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
Homology
BLAST of NO03G01490 vs. NCBI_GenBank
Match: KPK52445.1 (hypothetical protein AMJ63_09420 [Myxococcales bacterium SG8_38_1])

HSP 1 Score: 140.2 bits (352), Expect = 1.300e-29
Identity = 83/226 (36.73%), Postives = 122/226 (53.98%), Query Frame = 0
Query:  111 EGADSLVKDVAAATKCLSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILKR 337
            EG   L +      + L G  T  RL+R+  +V  RT  +  V + + +P+N  A LRS DAFGVQ  H IV    +R    +++     G+Q+WL VT + +A+ C   LKA GY +  + +   T P  +++     R++AVV GNE  G++ EMR+  DG F IPM GF ES N+SV  A+TL  L+  G  +    P  +RE L+ R+L+ SV     I+ R
Sbjct:    4 EGPPPLERPAEQVIQALRGVVTPERLQRIEAVVEGRTDDLVIVLDRIGDPHNSSAVLRSADAFGVQNVHAIVGEHGFRASRGVSK-----GTQRWLDVTRYETAAACARRLKADGYAIYVAAMDGETTPEDLRE----QRRLAVVFGNEHHGVSPEMRASADGRFSIPMRGFVESLNVSVAAAITLQTLARDGRSRLA--PARQRE-LLARFLMNSVKNADDIIAR 217          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: PKN58130.1 (RNA methyltransferase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14])

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-27
Identity = 81/219 (36.99%), Postives = 117/219 (53.42%), Query Frame = 0
Query:  122 AATKCLSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFL-----SSLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILK 336
            A  + LS F    R+ER+ D++ +RT  +  + E+V +P+NL AC+RS DAFG+Q  H++  A   R    +     + G+ +WLTV  H S    V AL A GY V A+DL     PT I ++        +  GNE  GI++ +R   D    IPM+GF ES N+SV  AV ++ L     ++LG  + GDL    R  L+ RW+   VP   AIL+
Sbjct:   32 ACARHLSPFLEPRRIERMSDVLGRRTRQLTALIEHVHDPHNLAACVRSCDAFGIQDLHIVPQAGARRV---MVGRDVSRGADRWLTVHYHDSTDRAVDALHAAGYRVAATDLDDNAPPTSITELS-IREPWCIAFGNEHDGISDTLRRRADLRVHIPMVGFVESLNISVAFAVAMSHLRLRRDAALG--EAGDLDAAARTDLLDRWIFADVPRARAILE 244          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: KPK14234.1 (hypothetical protein AMJ62_13515 [Myxococcales bacterium SG8_38])

HSP 1 Score: 132.5 bits (332), Expect = 2.700e-27
Identity = 72/210 (34.29%), Postives = 113/210 (53.81%), Query Frame = 0
Query:  125 KCLSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGDLPQEERERLVLRWLVKSVPMGTAIL 335
            + LS   T  RL+R+ ++V  RT ++  V + +A+P+N  A LRS DAFG+Q  HVIV    +R    +++     G+ +WL V  + SA  C   L+ +G+ +  +++   T P  +  +     ++AVV GNE RGI+  MR+  +GTF IPM GF ES N+SV  A+T   + +L G     L       L  R+L+ SV     ++
Sbjct:   10 EALSRVVTPKRLQRIEEVVRARTDAVVVVLDRIADPHNASAVLRSADAFGIQTVHVIVGEQGFRASRGVSK-----GTHRWLDVVRYESADTCARRLREEGFEIYVAEMGSATTPADLVSIP----RLAVVFGNEHRGISPAMRAAANGTFSIPMRGFVESLNVSVAAAIT---MQTLAGQGRAPLTPARSRALQARFLMNSVKNAEGVI 207          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: AKF05322.1 (tRNA (guanosine(18)-2'-O)-methyltransferase [Sandaracinus amylolyticus])

HSP 1 Score: 130.2 bits (326), Expect = 1.300e-26
Identity = 76/224 (33.93%), Postives = 122/224 (54.46%), Query Frame = 0
Query:  112 GADSLVKDVAAATKCLSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILK 336
            G   L K  A   + LS   T  R  R+  +V++RT S+  V E++A+P+N  A +RS DAFG Q  HV+     +   HR+ +     G+ +WL +  H     C+  L A+GY V  + +     P  +        K+A+V GNE +G + E+R+  DG ++IPM GF ES N+SV +A+TL +++S G  +HGDL +  R+ +  R+L+ +V     ++K
Sbjct:   16 GLAPLPKPAAEIVRVLSPLVTPQRWARIEAVVSRRTRSLVPVLEDLADPHNGAAVMRSADAFGCQEVHVVEGRHRFAVSHRVTR-----GTHRWLDLVRHEGPVACMDHLHARGYEVFVAAMDGDIGPEELA----KKPKVAIVFGNEHKGASPEVRARVDGVYRIPMEGFVESLNVSVASAITL-YVASRG--RHGDLDEAARDEIRARFLLATVRDAERVVK 227          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: WP_053232576.1 (TrmH family RNA methyltransferase [Sandaracinus amylolyticus])

HSP 1 Score: 130.2 bits (326), Expect = 1.300e-26
Identity = 76/224 (33.93%), Postives = 122/224 (54.46%), Query Frame = 0
Query:  112 GADSLVKDVAAATKCLSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILK 336
            G   L K  A   + LS   T  R  R+  +V++RT S+  V E++A+P+N  A +RS DAFG Q  HV+     +   HR+ +     G+ +WL +  H     C+  L A+GY V  + +     P  +        K+A+V GNE +G + E+R+  DG ++IPM GF ES N+SV +A+TL +++S G  +HGDL +  R+ +  R+L+ +V     ++K
Sbjct:   13 GLAPLPKPAAEIVRVLSPLVTPQRWARIEAVVSRRTRSLVPVLEDLADPHNGAAVMRSADAFGCQEVHVVEGRHRFAVSHRVTR-----GTHRWLDLVRHEGPVACMDHLHARGYEVFVAAMDGDIGPEELA----KKPKVAIVFGNEHKGASPEVRARVDGVYRIPMEGFVESLNVSVASAITL-YVASRG--RHGDLDEAARDEIRARFLLATVRDAERVVK 224          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: PIE06341.1 (hypothetical protein CSA75_00060 [Sorangium cellulosum])

HSP 1 Score: 130.2 bits (326), Expect = 1.300e-26
Identity = 73/212 (34.43%), Postives = 118/212 (55.66%), Query Frame = 0
Query:  125 KCLSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILKR 337
            + L  + T  R ERL+++   R  S+  V + +++P+N  A +R+ +AFGV   H+I   + +     LA A  A G+ KW+ V  H S   CV ALKA+G  ++ +          +  ++    ++A+V+GNE  GI   +   CD   ++PM GFAES N+SV  A+ LA+  ++ G + GDLP+ +R+RL  R L  +VP  ++IL R
Sbjct:   34 RVLEEYATQRRRERLQEVFRNRLGSVTVVMDEISDPHNGAALVRTCEAFGVGIIHLIAQGSQF-----LAHAGVARGTHKWVEVKSHDSVVACVGALKAEGMTLVGAHPSGDMVAADLNTID----RVAIVLGNEHAGIESSLYEACDHAVRVPMRGFAESLNVSVSGAILLAY--AVAG-RPGDLPELQRKRLYARGLAVTVPHASSILDR 233          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: WP_066201975.1 (hypothetical protein [Hydrogenibacillus schlegelii] >KWX07320.1 hypothetical protein TR75_03385 [Hydrogenibacillus schlegelii])

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-25
Identity = 78/195 (40.00%), Postives = 106/195 (54.36%), Query Frame = 0
Query:  132 TDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGD---LPQEERERLVLRWL 324
            T  R  RL  +  +RT  +  V E V + +N  A LRS DAFGVQ  HV+V  A +R    +A+     GS++WLT+  H S     SAL+A GY++ AS L P   P    D    AR  A V GNE+ G++E  R+L D  F +PM+GF ES N+SV  A+TL   +       G+   L ++ER  L+ RWL
Sbjct:   28 TPERFRRLYTVAARRTRHVTVVLEAVDDGHNQAAVLRSADAFGVQDVHVLVGKAPFRPSEGVAR-----GSERWLTIHRHPSPEAAFSALRAAGYVIAASALDPTAVPLEALDF---ARPTAFVFGNEKDGLSEAARALADVRFIVPMVGFVESLNVSVAAAITLYTATQKARALVGERFFLGRDERRALLGRWL 214          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: OAR03984.1 (hypothetical protein SA87_04220 [Hydrogenibacillus schlegelii])

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-25
Identity = 78/195 (40.00%), Postives = 106/195 (54.36%), Query Frame = 0
Query:  132 TDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGD---LPQEERERLVLRWL 324
            T  R  RL  +  +RT  +  V E V + +N  A LRS DAFGVQ  HV+V  A +R    +A+     GS++WLT+  H S     SAL+A GY++ AS L P   P    D    AR  A V GNE+ G++E  R+L D  F +PM+GF ES N+SV  A+TL   +       G+   L ++ER  L+ RWL
Sbjct:   59 TPERFRRLYTVAARRTRHVTVVLEAVDDGHNQAAVLRSADAFGVQDVHVLVGKAPFRPSEGVAR-----GSERWLTIHRHPSPEAAFSALRAAGYVIAASALDPTAVPLEALDF---ARPTAFVFGNEKDGLSEAARALADVRFIVPMVGFVESLNVSVAAAITLYTATQKARALVGERFFLGRDERRALLGRWL 245          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: PTQ51016.1 (tRNA (guanosine(18)-2'-O)-methyltransferase [Hydrogenibacillus schlegelii])

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-25
Identity = 78/195 (40.00%), Postives = 106/195 (54.36%), Query Frame = 0
Query:  132 TDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGD---LPQEERERLVLRWL 324
            T  R  RL  +  +RT  +  V E V + +N  A LRS DAFGVQ  HV+V  A +R    +A+     GS++WLT+  H S     SAL+A GY++ AS L P   P    D    AR  A V GNE+ G++E  R+L D  F +PM+GF ES N+SV  A+TL   +       G+   L ++ER  L+ RWL
Sbjct:   65 TPERFRRLYTVAARRTRHVTVVLEAVDDGHNQAAVLRSADAFGVQDVHVLVGKAPFRPSEGVAR-----GSERWLTIHRHPSPEAAFSALRAAGYVIAASALDPTAVPLEALDF---ARPTAFVFGNEKDGLSEAARALADVRFIVPMVGFVESLNVSVAAAITLYTATQKARALVGERFFLGRDERRALLGRWL 251          
BLAST of NO03G01490 vs. NCBI_GenBank
Match: PLX41818.1 (RNA methyltransferase [Deltaproteobacteria bacterium])

HSP 1 Score: 126.7 bits (317), Expect = 1.500e-25
Identity = 74/203 (36.45%), Postives = 114/203 (56.16%), Query Frame = 0
Query:  127 LSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGD---LPQEERERLVLRWLVKS 327
            L+G  T  R+ERL  ++  R  S++ V EN+ +P+N+ A +RS +AFGVQ+ HV+     ++    + +     GS KWL +  + S + C   LK  G+ + A+ L          D   A R IA+V+GNE  G++EE + LCDG + IPM GF +SFN+SV  A++L  LS+    + G+   L   ER  L+ RW+ K+
Sbjct:    8 LTGIMTPRRMERLISVLEGRLGSLRLVVENLHDPHNMSAVVRSCEAFGVQHLHVVDSKGEFKLSRGITK-----GSHKWLDIHYYDSFTPCAKELKEAGFDLYAALLVDDAVAL---DEVPAMRPIALVLGNEHAGVSEEAQRLCDGAYTIPMHGFVQSFNISVAAAISLYSLSTRMRRELGERALLSPYERSSLLERWIPKA 202          
The following BLAST results are available for this feature:
BLAST of NO03G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KPK52445.11.300e-2936.73hypothetical protein AMJ63_09420 [Myxococcales bac... [more]
PKN58130.11.200e-2736.99RNA methyltransferase [Deltaproteobacteria bacteri... [more]
KPK14234.12.700e-2734.29hypothetical protein AMJ62_13515 [Myxococcales bac... [more]
AKF05322.11.300e-2633.93tRNA (guanosine(18)-2'-O)-methyltransferase [Sanda... [more]
WP_053232576.11.300e-2633.93TrmH family RNA methyltransferase [Sandaracinus am... [more]
PIE06341.11.300e-2634.43hypothetical protein CSA75_00060 [Sorangium cellul... [more]
WP_066201975.11.100e-2540.00hypothetical protein [Hydrogenibacillus schlegelii... [more]
OAR03984.11.100e-2540.00hypothetical protein SA87_04220 [Hydrogenibacillus... [more]
PTQ51016.11.100e-2540.00tRNA (guanosine(18)-2'-O)-methyltransferase [Hydro... [more]
PLX41818.11.500e-2536.45RNA methyltransferase [Deltaproteobacteria bacteri... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005754NSK005754Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01490.1NO03G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571748gene_1327Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g92gene1035Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01490.1NO03G01490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01490 ID=NO03G01490|Name=NO03G01490|organism=Nannochloropsis oceanica|type=gene|length=1098bp
ATGCATCTCGCCTCAGCCTCAGTCCACACCTGCAATCCTGCCTTCGTCCT
CACCACCACCTCATTCGCTGCCACCACTACCTTGAGAATACATGGCAGAA
TTCCTACCACCAGAACATTTCTGCGGACGTCTGTGGTGGTCCATGACACG
CGCCGCAAGAGGAAGCTGCACTACGATGTGCCAAAACCCCAGAGTGAGGA
TGACTTCGACAATTGGGAGTTTGGGATAAATGCAGGATGGGCAAAAGAGC
ATGCGGGCCGTAAGCCGATGCCAAAGAGACGCGAAGGTGGCGAACAATAT
GGAGAAGAAGGAAGAGAGAATGGCGACGGGGAGGGGGCTGACAGTCTCGT
CAAAGATGTGGCAGCCGCGACCAAATGTCTGTCCGGCTTCTGCACCGACG
CCCGCTTGGAACGCCTGAGGGACATTGTGAATAAACGCACGTGCTCGATT
CAATTTGTCTTTGAGAACGTAGCAAATCCTAACAACCTGTGGGCATGTCT
TAGGTCACTCGATGCGTTTGGCGTGCAATACGCCCATGTCATCGTCGATG
CGGCGCATTATCGCAAGCCCCACCGACTAGCCCAAGCCAAAAGCGCGGTC
GGCTCTCAAAAGTGGCTCACCGTCACGGAGCATTACAGCGCTTCAAATTG
CGTCTCAGCGCTGAAAGCAAAAGGTTATTTGGTCTTAGCCAGTGACTTGA
AGCCTGGTACTTGCCCTACACCTATCCAAGACGTGGAGTGGGCAGCACGA
AAAATAGCGGTTGTGATGGGGAATGAAGAGAGGGGAATTACAGAGGAGAT
GCGATCTTTGTGTGATGGGACATTCCAGATTCCTATGATGGGTTTTGCAG
AGTCATTTAATTTGAGCGTGGGCACGGCTGTAACGCTGGCTTTTCTCAGT
TCCTTGGGAGGCCTCAAGCACGGGGATCTGCCGCAGGAGGAGAGAGAGCG
GTTGGTGTTAAGGTGGCTAGTGAAATCGGTGCCGATGGGCACGGCGATAT
TGAAGAGGGAGGGTTTATTGGTGGAGGATGAACGGGTGGTGCCGGCCTCG
GACACCGTGTTGGGGTTTAGCCTGTGGGGGAATAGAAGCGGGAGGTAG
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protein sequence of NO03G01490.1

>NO03G01490.1-protein ID=NO03G01490.1-protein|Name=NO03G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MHLASASVHTCNPAFVLTTTSFAATTTLRIHGRIPTTRTFLRTSVVVHDT
RRKRKLHYDVPKPQSEDDFDNWEFGINAGWAKEHAGRKPMPKRREGGEQY
GEEGRENGDGEGADSLVKDVAAATKCLSGFCTDARLERLRDIVNKRTCSI
QFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAV
GSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAAR
KIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLS
SLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILKREGLLVEDERVVPAS
DTVLGFSLWGNRSGR*
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Synonyms
Publications