NO03G01490.1, NO03G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01490.1
Unique NameNO03G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr3:453409..454506 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:453409..454506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01490.1 vs.
Match: EWM29606.1 (trna rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 474.6 bits (1220), Expect = 2.900e-130
Identity = 243/338 (71.89%), Postives = 275/338 (81.36%), Query Frame = 0 
Query:   33 RIPTTRTFLRTSVVVHDTRRKRKLHYDVPKPQSED-DFDNWEFGINAGWAKEHAGRKPMPKRREGG--EQYGEEGRE------NGDGEGADSL-VKDVAAATKCLSGFCTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLSSLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILKREGLLVEDERVVPASDTVLGFSLWG 361
            R+  +  F RTSV V DTRRKRKLHYDVPKP S D +FDNWEFG+NAGW+ E+ GR    K+   G  +  G+E  E      N D E  D   ++DVAAAT+CLS FCT ARLERLRDIVNKRT S+QFVFENVANPNNLWACLRSLDAFGVQYAHVI+D AHYRKPHRLAQAKSA+GSQKWLTV EH SAS CV+ALK +GY VLASDLKPGT P P+Q+V WAA+K+A+VMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLS  TAVTLAF+SS+GGLKHGDLP  E+  L+LRWL++SVP G AIL+REGLL+EDER +P S  VLG+SL G
Sbjct:   58 RVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEFGVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG 395
The following BLAST results are available for this feature:
BLAST of NO03G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29606.12.900e-13071.89trna rrna methyltransferase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01490NO03G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01490.1NO03G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01490.1.cds1NO03G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01490.1 ID=NO03G01490.1|Name=NO03G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
ATGCATCTCGCCTCAGCCTCAGTCCACACCTGCAATCCTGCCTTCGTCCT
CACCACCACCTCATTCGCTGCCACCACTACCTTGAGAATACATGGCAGAA
TTCCTACCACCAGAACATTTCTGCGGACGTCTGTGGTGGTCCATGACACG
CGCCGCAAGAGGAAGCTGCACTACGATGTGCCAAAACCCCAGAGTGAGGA
TGACTTCGACAATTGGGAGTTTGGGATAAATGCAGGATGGGCAAAAGAGC
ATGCGGGCCGTAAGCCGATGCCAAAGAGACGCGAAGGTGGCGAACAATAT
GGAGAAGAAGGAAGAGAGAATGGCGACGGGGAGGGGGCTGACAGTCTCGT
CAAAGATGTGGCAGCCGCGACCAAATGTCTGTCCGGCTTCTGCACCGACG
CCCGCTTGGAACGCCTGAGGGACATTGTGAATAAACGCACGTGCTCGATT
CAATTTGTCTTTGAGAACGTAGCAAATCCTAACAACCTGTGGGCATGTCT
TAGGTCACTCGATGCGTTTGGCGTGCAATACGCCCATGTCATCGTCGATG
CGGCGCATTATCGCAAGCCCCACCGACTAGCCCAAGCCAAAAGCGCGGTC
GGCTCTCAAAAGTGGCTCACCGTCACGGAGCATTACAGCGCTTCAAATTG
CGTCTCAGCGCTGAAAGCAAAAGGTTATTTGGTCTTAGCCAGTGACTTGA
AGCCTGGTACTTGCCCTACACCTATCCAAGACGTGGAGTGGGCAGCACGA
AAAATAGCGGTTGTGATGGGGAATGAAGAGAGGGGAATTACAGAGGAGAT
GCGATCTTTGTGTGATGGGACATTCCAGATTCCTATGATGGGTTTTGCAG
AGTCATTTAATTTGAGCGTGGGCACGGCTGTAACGCTGGCTTTTCTCAGT
TCCTTGGGAGGCCTCAAGCACGGGGATCTGCCGCAGGAGGAGAGAGAGCG
GTTGGTGTTAAGGTGGCTAGTGAAATCGGTGCCGATGGGCACGGCGATAT
TGAAGAGGGAGGGTTTATTGGTGGAGGATGAACGGGTGGTGCCGGCCTCG
GACACCGTGTTGGGGTTTAGCCTGTGGGGGAATAGAAGCGGGAGGTAG
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protein sequence of NO03G01490.1

>NO03G01490.1-protein ID=NO03G01490.1-protein|Name=NO03G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MHLASASVHTCNPAFVLTTTSFAATTTLRIHGRIPTTRTFLRTSVVVHDT
RRKRKLHYDVPKPQSEDDFDNWEFGINAGWAKEHAGRKPMPKRREGGEQY
GEEGRENGDGEGADSLVKDVAAATKCLSGFCTDARLERLRDIVNKRTCSI
QFVFENVANPNNLWACLRSLDAFGVQYAHVIVDAAHYRKPHRLAQAKSAV
GSQKWLTVTEHYSASNCVSALKAKGYLVLASDLKPGTCPTPIQDVEWAAR
KIAVVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSVGTAVTLAFLS
SLGGLKHGDLPQEERERLVLRWLVKSVPMGTAILKREGLLVEDERVVPAS
DTVLGFSLWGNRSGR*
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mRNA from alignment at chr3:453409..454506+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01490.1 ID=NO03G01490.1|Name=NO03G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp|location=Sequence derived from alignment at chr3:453409..454506+ (Nannochloropsis oceanica)
ATGCATCTCGCCTCAGCCTCAGTCCACACCTGCAATCCTGCCTTCGTCCT
CACCACCACCTCATTCGCTGCCACCACTACCTTGAGAATACATGGCAGAA
TTCCTACCACCAGAACATTTCTGCGGACGTCTGTGGTGGTCCATGACACG
CGCCGCAAGAGGAAGCTGCACTACGATGTGCCAAAACCCCAGAGTGAGGA
TGACTTCGACAATTGGGAGTTTGGGATAAATGCAGGATGGGCAAAAGAGC
ATGCGGGCCGTAAGCCGATGCCAAAGAGACGCGAAGGTGGCGAACAATAT
GGAGAAGAAGGAAGAGAGAATGGCGACGGGGAGGGGGCTGACAGTCTCGT
CAAAGATGTGGCAGCCGCGACCAAATGTCTGTCCGGCTTCTGCACCGACG
CCCGCTTGGAACGCCTGAGGGACATTGTGAATAAACGCACGTGCTCGATT
CAATTTGTCTTTGAGAACGTAGCAAATCCTAACAACCTGTGGGCATGTCT
TAGGTCACTCGATGCGTTTGGCGTGCAATACGCCCATGTCATCGTCGATG
CGGCGCATTATCGCAAGCCCCACCGACTAGCCCAAGCCAAAAGCGCGGTC
GGCTCTCAAAAGTGGCTCACCGTCACGGAGCATTACAGCGCTTCAAATTG
CGTCTCAGCGCTGAAAGCAAAAGGTTATTTGGTCTTAGCCAGTGACTTGA
AGCCTGGTACTTGCCCTACACCTATCCAAGACGTGGAGTGGGCAGCACGA
AAAATAGCGGTTGTGATGGGGAATGAAGAGAGGGGAATTACAGAGGAGAT
GCGATCTTTGTGTGATGGGACATTCCAGATTCCTATGATGGGTTTTGCAG
AGTCATTTAATTTGAGCGTGGGCACGGCTGTAACGCTGGCTTTTCTCAGT
TCCTTGGGAGGCCTCAAGCACGGGGATCTGCCGCAGGAGGAGAGAGAGCG
GTTGGTGTTAAGGTGGCTAGTGAAATCGGTGCCGATGGGCACGGCGATAT
TGAAGAGGGAGGGTTTATTGGTGGAGGATGAACGGGTGGTGCCGGCCTCG
GACACCGTGTTGGGGTTTAGCCTGTGGGGGAATAGAAGCGGGAGGTAG
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Coding sequence (CDS) from alignment at chr3:453409..454506+

>NO03G01490.1 ID=NO03G01490.1|Name=NO03G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr3:453409..454506+ (Nannochloropsis oceanica)
ATGCATCTCGCCTCAGCCTCAGTCCACACCTGCAATCCTGCCTTCGTCCT
CACCACCACCTCATTCGCTGCCACCACTACCTTGAGAATACATGGCAGAA
TTCCTACCACCAGAACATTTCTGCGGACGTCTGTGGTGGTCCATGACACG
CGCCGCAAGAGGAAGCTGCACTACGATGTGCCAAAACCCCAGAGTGAGGA
TGACTTCGACAATTGGGAGTTTGGGATAAATGCAGGATGGGCAAAAGAGC
ATGCGGGCCGTAAGCCGATGCCAAAGAGACGCGAAGGTGGCGAACAATAT
GGAGAAGAAGGAAGAGAGAATGGCGACGGGGAGGGGGCTGACAGTCTCGT
CAAAGATGTGGCAGCCGCGACCAAATGTCTGTCCGGCTTCTGCACCGACG
CCCGCTTGGAACGCCTGAGGGACATTGTGAATAAACGCACGTGCTCGATT
CAATTTGTCTTTGAGAACGTAGCAAATCCTAACAACCTGTGGGCATGTCT
TAGGTCACTCGATGCGTTTGGCGTGCAATACGCCCATGTCATCGTCGATG
CGGCGCATTATCGCAAGCCCCACCGACTAGCCCAAGCCAAAAGCGCGGTC
GGCTCTCAAAAGTGGCTCACCGTCACGGAGCATTACAGCGCTTCAAATTG
CGTCTCAGCGCTGAAAGCAAAAGGTTATTTGGTCTTAGCCAGTGACTTGA
AGCCTGGTACTTGCCCTACACCTATCCAAGACGTGGAGTGGGCAGCACGA
AAAATAGCGGTTGTGATGGGGAATGAAGAGAGGGGAATTACAGAGGAGAT
GCGATCTTTGTGTGATGGGACATTCCAGATTCCTATGATGGGTTTTGCAG
AGTCATTTAATTTGAGCGTGGGCACGGCTGTAACGCTGGCTTTTCTCAGT
TCCTTGGGAGGCCTCAAGCACGGGGATCTGCCGCAGGAGGAGAGAGAGCG
GTTGGTGTTAAGGTGGCTAGTGAAATCGGTGCCGATGGGCACGGCGATAT
TGAAGAGGGAGGGTTTATTGGTGGAGGATGAACGGGTGGTGCCGGCCTCG
GACACCGTGTTGGGGTTTAGCCTGTGGGGGAATAGAAGCGGGAGGTAG
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Synonyms
Publications