NO03G01370, NO03G01370 (gene) Nannochloropsis oceanica

Overview
NameNO03G01370
Unique NameNO03G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr3:425754..427310 -

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Properties
Property NameValue
DescriptionMitochondrial chloroplast ribosome small subunit component
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:425754..427310 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0032259methylation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR015324Ribosomal_Rsm22_bac-type
Homology
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_013109862.1 (PREDICTED: methyltransferase-like protein 17, mitochondrial isoform X1 [Stomoxys calcitrans])

HSP 1 Score: 79.7 bits (195), Expect = 2.400e-11
Identity = 58/181 (32.04%), Postives = 92/181 (50.83%), Query Frame = 0
Query:  202 EALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPD-IHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVL 382
            E++ Y   R    +++ +RVL ++               P+SFLD G G G+G+ +  ++W D I+    VD S  M DLSE +L     +EG        + V +R   P L        KYD+V +S++L EL+S  +R  A+  +W+   +  G+L++VE+GS  GS LV  AR  +L
Sbjct:  163 ESIVYALGRGPLEYAVLMRVLHEI-------RERDKDFKPQSFLDFGSGIGTGMWSVSSLWKDSIYEYYNVDSSRYMNDLSELIL-----KEGNANQQMTLRNVFYRQFLPAL------ETKYDLVLSSYSLFELSSAHNRHGAILNLWK---KCDGYLIIVEEGSRRGSELVNEARDLIL 322          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_013109863.1 (PREDICTED: methyltransferase-like protein 17, mitochondrial isoform X2 [Stomoxys calcitrans])

HSP 1 Score: 79.7 bits (195), Expect = 2.400e-11
Identity = 58/181 (32.04%), Postives = 92/181 (50.83%), Query Frame = 0
Query:  202 EALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPD-IHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVL 382
            E++ Y   R    +++ +RVL ++               P+SFLD G G G+G+ +  ++W D I+    VD S  M DLSE +L     +EG        + V +R   P L        KYD+V +S++L EL+S  +R  A+  +W+   +  G+L++VE+GS  GS LV  AR  +L
Sbjct:  163 ESIVYALGRGPLEYAVLMRVLHEI-------RERDKDFKPQSFLDFGSGIGTGMWSVSSLWKDSIYEYYNVDSSRYMNDLSELIL-----KEGNANQQMTLRNVFYRQFLPAL------ETKYDLVLSSYSLFELSSAHNRHGAILNLWK---KCDGYLIIVEEGSRRGSELVNEARDLIL 322          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_004341527.1 (methyltransferase domain containing protein [Acanthamoeba castellanii str. Neff] >ELR19441.1 methyltransferase domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 79.3 bits (194), Expect = 3.100e-11
Identity = 55/180 (30.56%), Postives = 83/180 (46.11%), Query Frame = 0
Query:  202 EALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVL 382
            EA+AY + R    ++   RV+ ++               P+S +D G GPG+ + +A  VWP++  +  V+ S AM D++  L  GK              V   R LP           +YDVV AS+ LSEL SE  R   +  +W+      G ++LVE G+P G   ++ AR  VL
Sbjct:  142 EAMAYAAHRLPGVYACTFRVMNEIKLRRP-------EWTPKSLMDFGSGPGTAVWSATEVWPELDNILAVEPSEAMIDVANELCKGK-------------PVKWKRLLPT------DPNERYDVVIASYVLSELPSEEERLAKINALWK-HTRRGGIMILVEPGTPVGFHNIKLARSTVL 294          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: OAQ36854.1 (Rsm22-domain-containing protein [Mortierella elongata AG-77])

HSP 1 Score: 79.3 bits (194), Expect = 3.100e-11
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 0
Query:  202 EALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVL 382
            E++AY+++ A   FS    VL++V         P L   P++FLD G GPG+ + AA  VW    +  GVD S AM + +E +L               G  + +    P +    K  AKYDVV +++ LSEL + A R   +  +W         L+LV+ G+P G R++  AR+ +L
Sbjct:  276 ESIAYIASMAPTTFSAIKNVLQEVNKRV-----PDLN--PKTFLDFGTGPGTAIWAANEVWETPLKYTGVDTSMAMLESAEEILDILS---------TNGSPIPNVTFKPFMSHGAK-AAKYDVVMSAFALSELTTPALRKSTLEHLWN---STNDMLILVDRGTPSGFRILAEAREQIL 435          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: CCA19192.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 78.2 bits (191), Expect = 6.900e-11
Identity = 55/184 (29.89%), Postives = 91/184 (49.46%), Query Frame = 0
Query:  200 PPEALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPD-IHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVLE 383
            P E LAYL+     N++      R +        +      P + +D G GPG+    A+  + D I + + V+ S AM D ++ L+    G              + R L  L  +   +  KYD +  ++ LSE+ ++  R   ++V+WEL++ E G+LV+V+ GSP GS  VRSAR+F+L+
Sbjct:  148 PSETLAYLAYEIDANYATLYNAFRQL-------RNKDQDFQPSTMIDFGAGPGTASWVAKEFFNDSIQKYQIVEPSQAMTDAAQVLMEDFNG------------FSIRRSLDELRSEV-LLNIKYDFIVMNYVLSEVTNDFERVKIMSVLWELLS-ENGYLVIVDRGSPWGSHQVRSARQFILD 310          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_017845234.1 (PREDICTED: methyltransferase-like protein 17, mitochondrial [Drosophila busckii] >ALC39043.1 CG13126 [Drosophila busckii])

HSP 1 Score: 78.2 bits (191), Expect = 6.900e-11
Identity = 60/182 (32.97%), Postives = 89/182 (48.90%), Query Frame = 0
Query:  202 EALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPD-IHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVLE 383
            EA+ Y   RA   +++  RVL ++           +   PRSF D G G G+G+  A  +W D I     VD S  M +LSE  L+ +GG E     L   K V +R   P +        KY++V  S TL EL+ +  R   +  +W    +  G++V+VE+G+  GS LV  AR F+L+
Sbjct:  169 EAVVYAIGRAAQEYAVLTRVLSEL-------QQRDVQFKPRSFFDFGSGIGTGMWVASELWRDSIFEYYNVDRSREMNELSE--LILQGGLENKQRSL---KNVFYRQFLPAI------VTKYELVVISHTLFELSDQQQREEVLLNLWR---KCDGYMVIVEEGTRRGSELVNEARMFLLK 329          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_016055054.1 (PREDICTED: methyltransferase-like protein 17, mitochondrial [Miniopterus natalensis])

HSP 1 Score: 78.2 bits (191), Expect = 6.900e-11
Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 0
Query:  203 ALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVW-PDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVLE 383
            +L Y++ R    F+   R   ++     LP        P++ +D G G GS   AA ++W   +     VD S AM DL+E LL  KGG E G   + G   V  R   P+  +      +++VV ++++LSEL S+A RA  V  +W    + R FL+LVE+G+  G RL+  AR  VL+
Sbjct:  157 SLVYMAARLDGGFAAVSRAFHEI--QTQLPEF-----QPQTLMDFGSGTGSVTWAAHSIWGQSLREYMCVDSSAAMLDLAEKLL--KGGSENGEPYVPG---VFFRQFLPVSPK-----VQFNVVVSAFSLSELPSKADRAEVVQTLWR---KTRDFLILVENGTKAGHRLLMEARDLVLK 317          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_019866069.1 (PREDICTED: methyltransferase-like protein 17, mitochondrial [Aethina tumida])

HSP 1 Score: 78.2 bits (191), Expect = 6.900e-11
Identity = 57/191 (29.84%), Postives = 88/191 (46.07%), Query Frame = 0
Query:  193 WTGKVASPPEALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVW-PDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVLE 383
            W   +    +AL YL  R+ P + + +R+  ++               PRSF D G G G+ L AA T W   I     VD S +M DLS+ LL G     G G      K + +R   P           YD+V ++++L EL S+ +R   +  +W    +   +LVLVE G+  G +++  AR F+L+
Sbjct:  147 WKPVIYDDFKALVYLIGRSAPEYGVLVRIFSEI-------HRRDQEFKPRSFFDFGSGVGTALWAANTFWNQHIFEYFNVDSSPSMNDLSQILLQG-----GRGNSASLIKGIFYRQFLP------ANNTSYDLVVSAYSLMELPSQEARLKTILNLWN---KTEKYLVLVEQGTNAGFKVINEARDFILQ 316          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_016979075.1 (PREDICTED: methyltransferase-like protein 17, mitochondrial [Drosophila rhopaloa])

HSP 1 Score: 77.8 bits (190), Expect = 9.000e-11
Identity = 58/182 (31.87%), Postives = 89/182 (48.90%), Query Frame = 0
Query:  202 EALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPD-IHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVLE 383
            E+L Y + R    +++  RVL ++A              PRSF D G G G+G+  A  +W D I+    VD S  M ++SE  L+ + G E     L   + V +R   P +         YD+V  S TL ELA +  R   +  +W    +  G++V++E+G+  GS LV  AR+F+LE
Sbjct:  157 ESLVYATARGAQEYAVMKRVLTELAQRDE-------QFRPRSFFDFGSGIGTGMWVASELWRDHIYEYYNVDRSKEMNEISE--LILRDGHENKQIAL---RNVFYRQFLPAI------ETNYDLVITSHTLFELADKEQREDVLRNLWR---KCDGYMVIMEEGTRRGSELVNEARRFLLE 317          
BLAST of NO03G01370 vs. NCBI_GenBank
Match: XP_017476805.1 (PREDICTED: methyltransferase-like protein 17, mitochondrial [Rhagoletis zephyria])

HSP 1 Score: 77.8 bits (190), Expect = 9.000e-11
Identity = 58/181 (32.04%), Postives = 87/181 (48.07%), Query Frame = 0
Query:  202 EALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPD-IHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVL 382
            E+L Y   R    + +   +L ++ A             PRS+ D G G G+G+ AA  +W D I     VD S +M DLSE +L     R+G        + V +R   P +         YD+V  S+TL EL +  SR   +  +W+  +   G+LV+VE+G+  GS LV  AR+F+L
Sbjct:  161 ESLVYAIGRGAKEYGVLTNILNELHARDG-------SFQPRSYFDFGSGVGTGMWAASNLWKDSIFEYYNVDSSRSMNDLSELIL-----RKGNQNQQMVLRNVYYRQFLPAI------ETMYDLVILSYTLFELPTSLSRKDVLLNLWKKCS---GYLVIVEEGTRRGSELVNEAREFIL 320          
The following BLAST results are available for this feature:
BLAST of NO03G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013109862.12.400e-1132.04PREDICTED: methyltransferase-like protein 17, mito... [more]
XP_013109863.12.400e-1132.04PREDICTED: methyltransferase-like protein 17, mito... [more]
XP_004341527.13.100e-1130.56methyltransferase domain containing protein [Acant... [more]
OAQ36854.13.100e-1131.67Rsm22-domain-containing protein [Mortierella elong... [more]
CCA19192.16.900e-1129.89conserved hypothetical protein [Albugo laibachii N... [more]
XP_017845234.16.900e-1132.97PREDICTED: methyltransferase-like protein 17, mito... [more]
XP_016055054.16.900e-1133.70PREDICTED: methyltransferase-like protein 17, mito... [more]
XP_019866069.16.900e-1129.84PREDICTED: methyltransferase-like protein 17, mito... [more]
XP_016979075.19.000e-1131.87PREDICTED: methyltransferase-like protein 17, mito... [more]
XP_017476805.19.000e-1132.04PREDICTED: methyltransferase-like protein 17, mito... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005771NSK005771Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01370.1NO03G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522200gene_1315Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g76gene1051Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01370.1NO03G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01370 ID=NO03G01370|Name=NO03G01370|organism=Nannochloropsis oceanica|type=gene|length=1557bp
ATGTTACCACCATCGTCATCCCCCTCTTTCTCCTCTGCCTCCTTCAGCAC
CCATCCCCGGCCCGCCCTCCAGCATGCCATCGAAGAGGAGGACGACGAGG
AGGAGGAAGAAGGAGATGATAATCAGGCTGTCATTCAAGAAGAGCGAACG
GCTTTGGGCAAGGCCTTATTGGACCCTGCGTGGATGCATGGGAGGAGGCG
CATTGCGGCTCCACCCCAAGACGGGATTGAGCGGATGAACGACCTTTCTA
GGTTGTTATCAGGAAAGCAGATTCGCTTACATGCCCGCCGAATGAATCGA
CGAGGGTCGGTGGAAGAAGACACGGCCATGAAGAAGAAAAAGGGGTCGCA
AAAGAAGAGAGGCGGGGCGTTGAGTGAAGAGGAGGACGAGGAGGGAGAGT
GGGATGATGGCGGCCGTCGCAACACACGAGCATCAAAAAGCGACGACAGT
AGCGACATTTCCTCATTCGAAGATGACGACATGGACGACGACGATGAAGA
TGGGGAAGAAGACGAGGAGGAAGGACCTATCGAAGGGGAGGGCGGCAAGG
CGGGCTATACAATGCTTACCCCCACCTGGACGGGAAAAGTAGCTTCCCCT
CCCGAAGCTCTCGCCTATCTCTCCACCCGTGCCGTCCCCAATTTCTCAAT
CAACCTCCGCGTGCTTCGTGATGTTGCCGCAGCCGCTTCCCTCCCTTCTT
CCCCGTCCCTTGGGGAGGCCCCTCGGTCGTTTCTGGACGTGGGGTGCGGG
CCTGGGAGCGGCTTGCTGGCTGCACAGACCGTGTGGCCGGATATCCACCG
ATTGGAAGGAGTGGACCACAGTTGTGCCATGCGTGATCTTAGCGAGCATT
TATTGGTGGGAAAAGGAGGGAGGGAAGGGGGAGGAGAGGGACTGGGGGGT
GGAAAAGTGGTGTTGCATCGGCACTTGCCACCTTTGTTGGGGCAAGCGGG
GAAGATGGGGGCGAAGTACGATGTGGTGTTTGCGTCGTGGACGCTATCGG
AATTAGCATCAGAGGCGAGCCGAGCAATGGCGGTGACGGTGATGTGGGAG
CTGGTGGCGGAGGAGCGCGGTTTTCTGGTCCTCGTTGAGGACGGGTCACC
GGAGGGGTCGAGGCTGGTGAGGAGCGCGAGGAAATTTGTGTTGGAACACC
AGCAGCAGCAGCAGCAGCAGCAGCAAAATTCCAGTGCAGCTGAGAGAGGA
GGAACATTGCCTATGTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
GGGGGGGCAGGAGCTGCAGCGGTAGGGGCTCGGACGGTGGGACCGTGTGC
TCACGATAAAGCTTGCCCTCTATCAAGGAACGATTGGTGTCGATTCTCCC
AACGGGTGCCCATCGGGCGGATTCAAAGGGGGGCGGGCAAACAGGGGTTG
GGGTACAAAGACGTGGCTTTCTCATATGTGATAATGCAGAAAATTGGAGG
GAGGAGGGAAGgcagggagggagggtgggagaggggggatgccaggttgg
ccgcgttgcatcggttgaggtacggggatagtcgggaggagggaagAAAG
GAGAGGA
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protein sequence of NO03G01370.1

>NO03G01370.1-protein ID=NO03G01370.1-protein|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MLPPSSSPSFSSASFSTHPRPALQHAIEEEDDEEEEEGDDNQAVIQEERT
ALGKALLDPAWMHGRRRIAAPPQDGIERMNDLSRLLSGKQIRLHARRMNR
RGSVEEDTAMKKKKGSQKKRGGALSEEEDEEGEWDDGGRRNTRASKSDDS
SDISSFEDDDMDDDDEDGEEDEEEGPIEGEGGKAGYTMLTPTWTGKVASP
PEALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCG
PGSGLLAAQTVWPDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGG
GKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWE
LVAEERGFLVLVEDGSPEGSRLVRSARKFVLEHQQQQQQQQQNSSAAERG
GTLPMSRGGGGGGGGGGGGQELQR*
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Synonyms
Publications