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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:425754..427310 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G01370.1 vs.
Match: EWM29591.1 (mitochondrial chloroplast ribosome small subunit component [Nannochloropsis gaditana]) HSP 1 Score: 367.5 bits (942), Expect = 5.700e-98 Identity = 219/380 (57.63%), Postives = 265/380 (69.74%), Query Frame = 0
Query: 8 PSFSSASFSTHPRPALQHA--IEEEDDEEEEEGDDNQAVIQEERTALGKALLDPAWMHGRRRIAAPPQDGIERMNDLSRLLSGKQIRLHARRMNRRGSVEEDTAMKKKKGSQKKRGGALSEEED---EEGEWDDGGRRNTRASKSDDSSDISSFEDDDMDDDDEDGEEDEEEGPIEGEGGKAGYTMLTPTWTGKVASPPEALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVLE 383
PS S ST P PAL+H + ++D EE E D ++EERTALGKALLDPAWMHGRR +AAPP +G++R+ND+SRLLSG+QIRLHA R+NR E A ++ + K + G L EEED E GE D G +N + ++ E D + EE IEGE K GYT+ P WTG+VASPPEALAYLSTR++ NFSINLRVLRDVA AA P S PRSFLDVGCGPGS LLAA T+WPDI RL+GVDHS AM+DL++H +V GG++ G G ++VLHRHLPPLL Q+G+ ++DVVFASWTLSEL S+ASRA+A ++MWELVAE GFLV+VEDGSPEGSRLVRS RK VLE
Sbjct: 31 PSTKQHSSSTSPTPALKHVSLVPADNDNEEREAD-----LREERTALGKALLDPAWMHGRRALAAPPVEGLDRINDVSRLLSGRQIRLHASRLNR-SKRESGLATERSRRPLKLKDGGLQEEEDAGGESGESIDKGTKNKSHGPKYVKEEKTTIEGHDAE---------EERQMIEGESEKPGYTIRKPAWTGRVASPPEALAYLSTRSLLNFSINLRVLRDVAVAARSPLFASSEARPRSFLDVGCGPGSALLAAHTLWPDIPRLDGVDHSQAMQDLTKH-VVETGGKDQAGR---GDRLVLHRHLPPLLAQSGRSQLRFDVVFASWTLSELPSDASRALATSIMWELVAENGGFLVVVEDGSPEGSRLVRSVRKLVLE 391
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G01370.1 ID=NO03G01370.1|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp ATGTTACCACCATCGTCATCCCCCTCTTTCTCCTCTGCCTCCTTCAGCAC CCATCCCCGGCCCGCCCTCCAGCATGCCATCGAAGAGGAGGACGACGAGG AGGAGGAAGAAGGAGATGATAATCAGGCTGTCATTCAAGAAGAGCGAACG GCTTTGGGCAAGGCCTTATTGGACCCTGCGTGGATGCATGGGAGGAGGCG CATTGCGGCTCCACCCCAAGACGGGATTGAGCGGATGAACGACCTTTCTA GGTTGTTATCAGGAAAGCAGATTCGCTTACATGCCCGCCGAATGAATCGA CGAGGGTCGGTGGAAGAAGACACGGCCATGAAGAAGAAAAAGGGGTCGCA AAAGAAGAGAGGCGGGGCGTTGAGTGAAGAGGAGGACGAGGAGGGAGAGT GGGATGATGGCGGCCGTCGCAACACACGAGCATCAAAAAGCGACGACAGT AGCGACATTTCCTCATTCGAAGATGACGACATGGACGACGACGATGAAGA TGGGGAAGAAGACGAGGAGGAAGGACCTATCGAAGGGGAGGGCGGCAAGG CGGGCTATACAATGCTTACCCCCACCTGGACGGGAAAAGTAGCTTCCCCT CCCGAAGCTCTCGCCTATCTCTCCACCCGTGCCGTCCCCAATTTCTCAAT CAACCTCCGCGTGCTTCGTGATGTTGCCGCAGCCGCTTCCCTCCCTTCTT CCCCGTCCCTTGGGGAGGCCCCTCGGTCGTTTCTGGACGTGGGGTGCGGG CCTGGGAGCGGCTTGCTGGCTGCACAGACCGTGTGGCCGGATATCCACCG ATTGGAAGGAGTGGACCACAGTTGTGCCATGCGTGATCTTAGCGAGCATT TATTGGTGGGAAAAGGAGGGAGGGAAGGGGGAGGAGAGGGACTGGGGGGT GGAAAAGTGGTGTTGCATCGGCACTTGCCACCTTTGTTGGGGCAAGCGGG GAAGATGGGGGCGAAGTACGATGTGGTGTTTGCGTCGTGGACGCTATCGG AATTAGCATCAGAGGCGAGCCGAGCAATGGCGGTGACGGTGATGTGGGAG CTGGTGGCGGAGGAGCGCGGTTTTCTGGTCCTCGTTGAGGACGGGTCACC GGAGGGGTCGAGGCTGGTGAGGAGCGCGAGGAAATTTGTGTTGGAACACC AGCAGCAGCAGCAGCAGCAGCAGCAAAATTCCAGTGCAGCTGAGAGAGGA GGAACATTGCCTATGTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG GGGGGGGCAGGAGCTGCAGCGGTAGGGGCTCGGACGGTGGGACCGTGTGC TCACGATAAAGCTTGCCCTCTATCAAGGAACGATTGGTGTCGATTCTCCC AACGGGTGCCCATCGGGCGGATTCAAAGGGGGGCGGGCAAACAGGGGTTG GGGTACAAAGACGTGGCTTTCTCATATGTGATAATGCAGAAAATTGGAGG GAGGAGGGAAGAAAGGAGAGGA back to topprotein sequence of NO03G01370.1 >NO03G01370.1-protein ID=NO03G01370.1-protein|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp MLPPSSSPSFSSASFSTHPRPALQHAIEEEDDEEEEEGDDNQAVIQEERT ALGKALLDPAWMHGRRRIAAPPQDGIERMNDLSRLLSGKQIRLHARRMNR RGSVEEDTAMKKKKGSQKKRGGALSEEEDEEGEWDDGGRRNTRASKSDDS SDISSFEDDDMDDDDEDGEEDEEEGPIEGEGGKAGYTMLTPTWTGKVASP PEALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCG PGSGLLAAQTVWPDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGG GKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWE LVAEERGFLVLVEDGSPEGSRLVRSARKFVLEHQQQQQQQQQNSSAAERG GTLPMSRGGGGGGGGGGGGQELQR* back to topmRNA from alignment at chr3:425754..427310- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G01370.1 ID=NO03G01370.1|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr3:425754..427310- (Nannochloropsis oceanica) ATGTTACCACCATCGTCATCCCCCTCTTTCTCCTCTGCCTCCTTCAGCAC
CCATCCCCGGCCCGCCCTCCAGCATGCCATCGAAGAGGAGGACGACGAGG
AGGAGGAAGAAGGAGATGATAATCAGGCTGTCATTCAAGAAGAGCGAACG
GCTTTGGGCAAGGCCTTATTGGACCCTGCGTGGATGCATGGGAGGAGGCG
CATTGCGGCTCCACCCCAAGACGGGATTGAGCGGATGAACGACCTTTCTA
GGTTGTTATCAGGAAAGCAGATTCGCTTACATGCCCGCCGAATGAATCGA
CGAGGGTCGGTGGAAGAAGACACGGCCATGAAGAAGAAAAAGGGGTCGCA
AAAGAAGAGAGGCGGGGCGTTGAGTGAAGAGGAGGACGAGGAGGGAGAGT
GGGATGATGGCGGCCGTCGCAACACACGAGCATCAAAAAGCGACGACAGT
AGCGACATTTCCTCATTCGAAGATGACGACATGGACGACGACGATGAAGA
TGGGGAAGAAGACGAGGAGGAAGGACCTATCGAAGGGGAGGGCGGCAAGG
CGGGCTATACAATGCTTACCCCCACCTGGACGGGAAAAGTAGCTTCCCCT
CCCGAAGCTCTCGCCTATCTCTCCACCCGTGCCGTCCCCAATTTCTCAAT
CAACCTCCGCGTGCTTCGTGATGTTGCCGCAGCCGCTTCCCTCCCTTCTT
CCCCGTCCCTTGGGGAGGCCCCTCGGTCGTTTCTGGACGTGGGGTGCGGG
CCTGGGAGCGGCTTGCTGGCTGCACAGACCGTGTGGCCGGATATCCACCG
ATTGGAAGGAGTGGACCACAGTTGTGCCATGCGTGATCTTAGCGAGCATT
TATTGGTGGGAAAAGGAGGGAGGGAAGGGGGAGGAGAGGGACTGGGGGGT
GGAAAAGTGGTGTTGCATCGGCACTTGCCACCTTTGTTGGGGCAAGCGGG
GAAGATGGGGGCGAAGTACGATGTGGTGTTTGCGTCGTGGACGCTATCGG
AATTAGCATCAGAGGCGAGCCGAGCAATGGCGGTGACGGTGATGTGGGAG
CTGGTGGCGGAGGAGCGCGGTTTTCTGGTCCTCGTTGAGGACGGGTCACC
GGAGGGGTCGAGGCTGGTGAGGAGCGCGAGGAAATTTGTGTTGGAACACC
AGCAGCAGCAGCAGCAGCAGCAGCAAAATTCCAGTGCAGCTGAGAGAGGA
GGAACATTGCCTATGTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
GGGGGGGCAGGAGCTGCAGCGGTAGGGGCTCGGACGGTGGGACCGTGTGC
TCACGATAAAGCTTGCCCTCTATCAAGGAACGATTGGTGTCGATTCTCCC
AACGGGTGCCCATCGGGCGGATTCAAAGGGGGGCGGGCAAACAGGGGTTG
GGGTACAAAGACGTGGCTTTCTCATATGTGATAATGCAGAAAATTGGAGG
GAGGAGGGAAGGCAGGGAGGGAGGGTGGGAGAGGGGGGATGCCAGGTTGG
CCGCGTTGCATCGGTTGAGGTACGGGGATAGTCGGGAGGAGGGAAGAAAG
GAGAGGA back to topCoding sequence (CDS) from alignment at chr3:425754..427310- >NO03G01370.1 ID=NO03G01370.1|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr3:425754..427310- (Nannochloropsis oceanica) ATGTTACCACCATCGTCATCCCCCTCTTTCTCCTCTGCCTCCTTCAGCAC CCATCCCCGGCCCGCCCTCCAGCATGCCATCGAAGAGGAGGACGACGAGG AGGAGGAAGAAGGAGATGATAATCAGGCTGTCATTCAAGAAGAGCGAACG GCTTTGGGCAAGGCCTTATTGGACCCTGCGTGGATGCATGGGAGGAGGCG CATTGCGGCTCCACCCCAAGACGGGATTGAGCGGATGAACGACCTTTCTA GGTTGTTATCAGGAAAGCAGATTCGCTTACATGCCCGCCGAATGAATCGA CGAGGGTCGGTGGAAGAAGACACGGCCATGAAGAAGAAAAAGGGGTCGCA AAAGAAGAGAGGCGGGGCGTTGAGTGAAGAGGAGGACGAGGAGGGAGAGT GGGATGATGGCGGCCGTCGCAACACACGAGCATCAAAAAGCGACGACAGT AGCGACATTTCCTCATTCGAAGATGACGACATGGACGACGACGATGAAGA TGGGGAAGAAGACGAGGAGGAAGGACCTATCGAAGGGGAGGGCGGCAAGG CGGGCTATACAATGCTTACCCCCACCTGGACGGGAAAAGTAGCTTCCCCT CCCGAAGCTCTCGCCTATCTCTCCACCCGTGCCGTCCCCAATTTCTCAAT CAACCTCCGCGTGCTTCGTGATGTTGCCGCAGCCGCTTCCCTCCCTTCTT CCCCGTCCCTTGGGGAGGCCCCTCGGTCGTTTCTGGACGTGGGGTGCGGG CCTGGGAGCGGCTTGCTGGCTGCACAGACCGTGTGGCCGGATATCCACCG ATTGGAAGGAGTGGACCACAGTTGTGCCATGCGTGATCTTAGCGAGCATT TATTGGTGGGAAAAGGAGGGAGGGAAGGGGGAGGAGAGGGACTGGGGGGT GGAAAAGTGGTGTTGCATCGGCACTTGCCACCTTTGTTGGGGCAAGCGGG GAAGATGGGGGCGAAGTACGATGTGGTGTTTGCGTCGTGGACGCTATCGG AATTAGCATCAGAGGCGAGCCGAGCAATGGCGGTGACGGTGATGTGGGAG CTGGTGGCGGAGGAGCGCGGTTTTCTGGTCCTCGTTGAGGACGGGTCACC GGAGGGGTCGAGGCTGGTGAGGAGCGCGAGGAAATTTGTGTTGGAACACC AGCAGCAGCAGCAGCAGCAGCAGCAAAATTCCAGTGCAGCTGAGAGAGGA GGAACATTGCCTATGTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG GGGGGGGCAGGAGCTGCAGCGGTAG back to top
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