NO03G01370.1, NO03G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01370.1
Unique NameNO03G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1472
Alignment locationchr3:425754..427310 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:425754..427310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G01370.1 vs.
Match: EWM29591.1 (mitochondrial chloroplast ribosome small subunit component [Nannochloropsis gaditana])

HSP 1 Score: 367.5 bits (942), Expect = 5.700e-98
Identity = 219/380 (57.63%), Postives = 265/380 (69.74%), Query Frame = 0
Query:    8 PSFSSASFSTHPRPALQHA--IEEEDDEEEEEGDDNQAVIQEERTALGKALLDPAWMHGRRRIAAPPQDGIERMNDLSRLLSGKQIRLHARRMNRRGSVEEDTAMKKKKGSQKKRGGALSEEED---EEGEWDDGGRRNTRASKSDDSSDISSFEDDDMDDDDEDGEEDEEEGPIEGEGGKAGYTMLTPTWTGKVASPPEALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCGPGSGLLAAQTVWPDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGGGKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWELVAEERGFLVLVEDGSPEGSRLVRSARKFVLE 383
            PS    S ST P PAL+H   +  ++D EE E D     ++EERTALGKALLDPAWMHGRR +AAPP +G++R+ND+SRLLSG+QIRLHA R+NR    E   A ++ +   K + G L EEED   E GE  D G +N          + ++ E  D +         EE   IEGE  K GYT+  P WTG+VASPPEALAYLSTR++ NFSINLRVLRDVA AA  P   S    PRSFLDVGCGPGS LLAA T+WPDI RL+GVDHS AM+DL++H +V  GG++  G    G ++VLHRHLPPLL Q+G+   ++DVVFASWTLSEL S+ASRA+A ++MWELVAE  GFLV+VEDGSPEGSRLVRS RK VLE
Sbjct:   31 PSTKQHSSSTSPTPALKHVSLVPADNDNEEREAD-----LREERTALGKALLDPAWMHGRRALAAPPVEGLDRINDVSRLLSGRQIRLHASRLNR-SKRESGLATERSRRPLKLKDGGLQEEEDAGGESGESIDKGTKNKSHGPKYVKEEKTTIEGHDAE---------EERQMIEGESEKPGYTIRKPAWTGRVASPPEALAYLSTRSLLNFSINLRVLRDVAVAARSPLFASSEARPRSFLDVGCGPGSALLAAHTLWPDIPRLDGVDHSQAMQDLTKH-VVETGGKDQAGR---GDRLVLHRHLPPLLAQSGRSQLRFDVVFASWTLSELPSDASRALATSIMWELVAENGGFLVVVEDGSPEGSRLVRSVRKLVLE 391          
The following BLAST results are available for this feature:
BLAST of NO03G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29591.15.700e-9857.63mitochondrial chloroplast ribosome small subunit c... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01370NO03G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01370.1NO03G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01370.1.cds1NO03G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01370.1 ID=NO03G01370.1|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp
ATGTTACCACCATCGTCATCCCCCTCTTTCTCCTCTGCCTCCTTCAGCAC
CCATCCCCGGCCCGCCCTCCAGCATGCCATCGAAGAGGAGGACGACGAGG
AGGAGGAAGAAGGAGATGATAATCAGGCTGTCATTCAAGAAGAGCGAACG
GCTTTGGGCAAGGCCTTATTGGACCCTGCGTGGATGCATGGGAGGAGGCG
CATTGCGGCTCCACCCCAAGACGGGATTGAGCGGATGAACGACCTTTCTA
GGTTGTTATCAGGAAAGCAGATTCGCTTACATGCCCGCCGAATGAATCGA
CGAGGGTCGGTGGAAGAAGACACGGCCATGAAGAAGAAAAAGGGGTCGCA
AAAGAAGAGAGGCGGGGCGTTGAGTGAAGAGGAGGACGAGGAGGGAGAGT
GGGATGATGGCGGCCGTCGCAACACACGAGCATCAAAAAGCGACGACAGT
AGCGACATTTCCTCATTCGAAGATGACGACATGGACGACGACGATGAAGA
TGGGGAAGAAGACGAGGAGGAAGGACCTATCGAAGGGGAGGGCGGCAAGG
CGGGCTATACAATGCTTACCCCCACCTGGACGGGAAAAGTAGCTTCCCCT
CCCGAAGCTCTCGCCTATCTCTCCACCCGTGCCGTCCCCAATTTCTCAAT
CAACCTCCGCGTGCTTCGTGATGTTGCCGCAGCCGCTTCCCTCCCTTCTT
CCCCGTCCCTTGGGGAGGCCCCTCGGTCGTTTCTGGACGTGGGGTGCGGG
CCTGGGAGCGGCTTGCTGGCTGCACAGACCGTGTGGCCGGATATCCACCG
ATTGGAAGGAGTGGACCACAGTTGTGCCATGCGTGATCTTAGCGAGCATT
TATTGGTGGGAAAAGGAGGGAGGGAAGGGGGAGGAGAGGGACTGGGGGGT
GGAAAAGTGGTGTTGCATCGGCACTTGCCACCTTTGTTGGGGCAAGCGGG
GAAGATGGGGGCGAAGTACGATGTGGTGTTTGCGTCGTGGACGCTATCGG
AATTAGCATCAGAGGCGAGCCGAGCAATGGCGGTGACGGTGATGTGGGAG
CTGGTGGCGGAGGAGCGCGGTTTTCTGGTCCTCGTTGAGGACGGGTCACC
GGAGGGGTCGAGGCTGGTGAGGAGCGCGAGGAAATTTGTGTTGGAACACC
AGCAGCAGCAGCAGCAGCAGCAGCAAAATTCCAGTGCAGCTGAGAGAGGA
GGAACATTGCCTATGTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
GGGGGGGCAGGAGCTGCAGCGGTAGGGGCTCGGACGGTGGGACCGTGTGC
TCACGATAAAGCTTGCCCTCTATCAAGGAACGATTGGTGTCGATTCTCCC
AACGGGTGCCCATCGGGCGGATTCAAAGGGGGGCGGGCAAACAGGGGTTG
GGGTACAAAGACGTGGCTTTCTCATATGTGATAATGCAGAAAATTGGAGG
GAGGAGGGAAGAAAGGAGAGGA
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protein sequence of NO03G01370.1

>NO03G01370.1-protein ID=NO03G01370.1-protein|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MLPPSSSPSFSSASFSTHPRPALQHAIEEEDDEEEEEGDDNQAVIQEERT
ALGKALLDPAWMHGRRRIAAPPQDGIERMNDLSRLLSGKQIRLHARRMNR
RGSVEEDTAMKKKKGSQKKRGGALSEEEDEEGEWDDGGRRNTRASKSDDS
SDISSFEDDDMDDDDEDGEEDEEEGPIEGEGGKAGYTMLTPTWTGKVASP
PEALAYLSTRAVPNFSINLRVLRDVAAAASLPSSPSLGEAPRSFLDVGCG
PGSGLLAAQTVWPDIHRLEGVDHSCAMRDLSEHLLVGKGGREGGGEGLGG
GKVVLHRHLPPLLGQAGKMGAKYDVVFASWTLSELASEASRAMAVTVMWE
LVAEERGFLVLVEDGSPEGSRLVRSARKFVLEHQQQQQQQQQNSSAAERG
GTLPMSRGGGGGGGGGGGGQELQR*
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mRNA from alignment at chr3:425754..427310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01370.1 ID=NO03G01370.1|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr3:425754..427310- (Nannochloropsis oceanica)
ATGTTACCACCATCGTCATCCCCCTCTTTCTCCTCTGCCTCCTTCAGCAC CCATCCCCGGCCCGCCCTCCAGCATGCCATCGAAGAGGAGGACGACGAGG AGGAGGAAGAAGGAGATGATAATCAGGCTGTCATTCAAGAAGAGCGAACG GCTTTGGGCAAGGCCTTATTGGACCCTGCGTGGATGCATGGGAGGAGGCG CATTGCGGCTCCACCCCAAGACGGGATTGAGCGGATGAACGACCTTTCTA GGTTGTTATCAGGAAAGCAGATTCGCTTACATGCCCGCCGAATGAATCGA CGAGGGTCGGTGGAAGAAGACACGGCCATGAAGAAGAAAAAGGGGTCGCA AAAGAAGAGAGGCGGGGCGTTGAGTGAAGAGGAGGACGAGGAGGGAGAGT GGGATGATGGCGGCCGTCGCAACACACGAGCATCAAAAAGCGACGACAGT AGCGACATTTCCTCATTCGAAGATGACGACATGGACGACGACGATGAAGA TGGGGAAGAAGACGAGGAGGAAGGACCTATCGAAGGGGAGGGCGGCAAGG CGGGCTATACAATGCTTACCCCCACCTGGACGGGAAAAGTAGCTTCCCCT CCCGAAGCTCTCGCCTATCTCTCCACCCGTGCCGTCCCCAATTTCTCAAT CAACCTCCGCGTGCTTCGTGATGTTGCCGCAGCCGCTTCCCTCCCTTCTT CCCCGTCCCTTGGGGAGGCCCCTCGGTCGTTTCTGGACGTGGGGTGCGGG CCTGGGAGCGGCTTGCTGGCTGCACAGACCGTGTGGCCGGATATCCACCG ATTGGAAGGAGTGGACCACAGTTGTGCCATGCGTGATCTTAGCGAGCATT TATTGGTGGGAAAAGGAGGGAGGGAAGGGGGAGGAGAGGGACTGGGGGGT GGAAAAGTGGTGTTGCATCGGCACTTGCCACCTTTGTTGGGGCAAGCGGG GAAGATGGGGGCGAAGTACGATGTGGTGTTTGCGTCGTGGACGCTATCGG AATTAGCATCAGAGGCGAGCCGAGCAATGGCGGTGACGGTGATGTGGGAG CTGGTGGCGGAGGAGCGCGGTTTTCTGGTCCTCGTTGAGGACGGGTCACC GGAGGGGTCGAGGCTGGTGAGGAGCGCGAGGAAATTTGTGTTGGAACACC AGCAGCAGCAGCAGCAGCAGCAGCAAAATTCCAGTGCAGCTGAGAGAGGA GGAACATTGCCTATGTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG GGGGGGGCAGGAGCTGCAGCGGTAGGGGCTCGGACGGTGGGACCGTGTGC TCACGATAAAGCTTGCCCTCTATCAAGGAACGATTGGTGTCGATTCTCCC AACGGGTGCCCATCGGGCGGATTCAAAGGGGGGCGGGCAAACAGGGGTTG GGGTACAAAGACGTGGCTTTCTCATATGTGATAATGCAGAAAATTGGAGG GAGGAGGGAAGGCAGGGAGGGAGGGTGGGAGAGGGGGGATGCCAGGTTGG CCGCGTTGCATCGGTTGAGGTACGGGGATAGTCGGGAGGAGGGAAGAAAG GAGAGGA
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Coding sequence (CDS) from alignment at chr3:425754..427310-

>NO03G01370.1 ID=NO03G01370.1|Name=NO03G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr3:425754..427310- (Nannochloropsis oceanica)
ATGTTACCACCATCGTCATCCCCCTCTTTCTCCTCTGCCTCCTTCAGCAC
CCATCCCCGGCCCGCCCTCCAGCATGCCATCGAAGAGGAGGACGACGAGG
AGGAGGAAGAAGGAGATGATAATCAGGCTGTCATTCAAGAAGAGCGAACG
GCTTTGGGCAAGGCCTTATTGGACCCTGCGTGGATGCATGGGAGGAGGCG
CATTGCGGCTCCACCCCAAGACGGGATTGAGCGGATGAACGACCTTTCTA
GGTTGTTATCAGGAAAGCAGATTCGCTTACATGCCCGCCGAATGAATCGA
CGAGGGTCGGTGGAAGAAGACACGGCCATGAAGAAGAAAAAGGGGTCGCA
AAAGAAGAGAGGCGGGGCGTTGAGTGAAGAGGAGGACGAGGAGGGAGAGT
GGGATGATGGCGGCCGTCGCAACACACGAGCATCAAAAAGCGACGACAGT
AGCGACATTTCCTCATTCGAAGATGACGACATGGACGACGACGATGAAGA
TGGGGAAGAAGACGAGGAGGAAGGACCTATCGAAGGGGAGGGCGGCAAGG
CGGGCTATACAATGCTTACCCCCACCTGGACGGGAAAAGTAGCTTCCCCT
CCCGAAGCTCTCGCCTATCTCTCCACCCGTGCCGTCCCCAATTTCTCAAT
CAACCTCCGCGTGCTTCGTGATGTTGCCGCAGCCGCTTCCCTCCCTTCTT
CCCCGTCCCTTGGGGAGGCCCCTCGGTCGTTTCTGGACGTGGGGTGCGGG
CCTGGGAGCGGCTTGCTGGCTGCACAGACCGTGTGGCCGGATATCCACCG
ATTGGAAGGAGTGGACCACAGTTGTGCCATGCGTGATCTTAGCGAGCATT
TATTGGTGGGAAAAGGAGGGAGGGAAGGGGGAGGAGAGGGACTGGGGGGT
GGAAAAGTGGTGTTGCATCGGCACTTGCCACCTTTGTTGGGGCAAGCGGG
GAAGATGGGGGCGAAGTACGATGTGGTGTTTGCGTCGTGGACGCTATCGG
AATTAGCATCAGAGGCGAGCCGAGCAATGGCGGTGACGGTGATGTGGGAG
CTGGTGGCGGAGGAGCGCGGTTTTCTGGTCCTCGTTGAGGACGGGTCACC
GGAGGGGTCGAGGCTGGTGAGGAGCGCGAGGAAATTTGTGTTGGAACACC
AGCAGCAGCAGCAGCAGCAGCAGCAAAATTCCAGTGCAGCTGAGAGAGGA
GGAACATTGCCTATGTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
GGGGGGGCAGGAGCTGCAGCGGTAG
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Synonyms
Publications