NO03G01120, NO03G01120 (gene) Nannochloropsis oceanica

Overview
NameNO03G01120
Unique NameNO03G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1695
Alignment locationchr3:349311..351005 -

Link to JBrowse

Properties
Property NameValue
DescriptionMyb dna binding protein transcription factor-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:349311..351005 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017884SANT_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO03G01120 vs. NCBI_GenBank
Match: EWM29546.1 (myb dna binding protein transcription factor-like protein [Nannochloropsis gaditana])

HSP 1 Score: 257.3 bits (656), Expect = 5.100e-65
Identity = 137/186 (73.66%), Postives = 152/186 (81.72%), Query Frame = 0
Query:   75 NKDGEGRSSGRIRSSGDNDSTRIGPSGSLSTTANTXXXXXXXXXXXXXXXXAP--DRWRSQKMAEDYINLVGDLMYPKVGFGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGFEPLDPHPFSILPQDD 259
            +K+  GRSS RI++S + D                XXXXXXXXXXXXXXX     +RWR+Q+MAEDY+NLVGDLMYPKV FGPYGYD  KGEIPLERPNTLG +MCP RRRTV+EHWSPFEVACFEGAI+LVGKNFYEI+KLL SKSTK+CIEFYYVWKMTSHYQQWKR FEPLDPHPFSILP D+
Sbjct:   71 DKESVGRSSARIKNSAERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE 256          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: CBJ29293.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 146.7 bits (369), Expect = 9.700e-32
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 0
Query:  129 RWRSQKMAEDYINLVGDLMYPKVGFGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGF 244
            RWR+ +M EDY N+ G +MY  V  GP+GY++V+G  P+ERP TLG I   +RR TVIE WSP++VA FEGAI + GK F+++A+ +  K+  D +EFYY+WK T+HY+QWK  F
Sbjct:  396 RWRTHRMVEDYTNVCGKIMYGHVRTGPFGYNSVEGRFPMERPTTLGMIKAGMRRPTVIERWSPYDVALFEGAISVHGKVFHKVAEEIEGKTVADVVEFYYMWKKTNHYKQWKSMF 510          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: XP_002176665.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51128.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 134.8 bits (338), Expect = 3.800e-28
Identity = 56/118 (47.46%), Postives = 81/118 (68.64%), Query Frame = 0
Query:  129 RWRSQKMAEDYINLVGDLM-YPKVGFGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGFEP 246
            RW++ ++ EDYI+    +M  P    GPYGYD  + + PLE  + L  +  P+RR TV+E WSP+E+A FEGA+   GK+FY I K +++KST++ I+FYYVWK TSHY+ WK+ + P
Sbjct:   79 RWKAHQIVEDYIDFASHMMLLPTSQLGPYGYDTSRRQFPLETVSALAFVASPLRRPTVVERWSPYEIAIFEGAMAQYGKDFYHIHKFIKTKSTQEIIDFYYVWKKTSHYRLWKKTYIP 196          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: GAX15706.1 (hypothetical protein FisN_3Hh180 [Fistulifera solaris])

HSP 1 Score: 124.8 bits (312), Expect = 3.900e-25
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 0
Query:  129 RWRSQKMAEDYINLVGDLMYPKVG-FGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGFEPLDPH 250
            RW+  ++ E+Y++   +LM   +  FG YGYD  K + PLE  + LG +  P+RR  VIE WSP+E+A FE A++  GK F ++   + SK+TK+ IEFYY+WK TSHY  WK+ + P  PH
Sbjct:   53 RWKVHRLTEEYVDFASNLMLTPISEFGSYGYDPNKLQFPLEAVSALGYLKSPLRRPLVIEKWSPYEIAVFEAALIQHGKQFEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWKKQYIP--PH 172          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: GAX15741.1 (hypothetical protein FisN_3Lh180 [Fistulifera solaris])

HSP 1 Score: 123.2 bits (308), Expect = 1.100e-24
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 0
Query:  129 RWRSQKMAEDYINLVGDLMYPKVG-FGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGFEPLDPH 250
            RW+  ++ E+Y++   +LM   +   G YGYD  K + PLE  + LG +  P+RR  VIE WSP+E+A FE A++  GK F ++   + SK+TK+ IEFYY+WK TSHY  WK+ + P  PH
Sbjct:   52 RWKVHRLTEEYVDFASNLMLTPISELGSYGYDPSKLQFPLEAVSALGYLKSPMRRSLVIEKWSPYEIAVFEAALIQHGKQFEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWKKKYIP--PH 171          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: GBG33861.1 (Mesoderm induction early response protein 1 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 87.4 bits (215), Expect = 7.000e-14
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0
Query:  167 LERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGF 244
            ++  N+LG ++ P+ R +V E W+P E+A FE  I   GKNF+ I K++RSK+T + I+FYYVWK T  Y+ WKR +
Sbjct:  148 IQHHNSLGRLVSPLYRPSVEEQWAPREIAIFEAGICAYGKNFHAIQKMIRSKTTCEVIDFYYVWKKTDSYKVWKRSY 224          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: ETO09978.1 (hypothetical protein RFI_27398 [Reticulomyxa filosa])

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-13
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 0
Query:  171 NTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKR 242
            +TL  ++ P R+R+ I+ WS  EVA FE A+   GKNFYEI+K++ +K  K  IEFYY WK ++HYQ WK+
Sbjct:   16 STLDVLLSPYRKRSPIDEWSAREVALFESAMCCKGKNFYEISKIIGTKCCKQVIEFYYFWKNSTHYQTWKQ 86          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: CEP00482.1 (hypothetical protein PBRA_001536 [Plasmodiophora brassicae])

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-12
Identity = 30/70 (42.86%), Postives = 51/70 (72.86%), Query Frame = 0
Query:  171 NTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWK 241
            +T+ A++ P+R+R++ E WSP ++A FE  +  +GK+F+ IAKL+ +K+T+D +  YY WK ++HY  WK
Sbjct:  171 STIEALLSPLRKRSIWESWSPIQLAIFESGLCTLGKDFHAIAKLIENKTTRDVVNLYYHWKQSAHYHMWK 240          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: OAO12229.1 (MYB DNA binding protein/ transcription factor-like protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 0
Query:  169 RPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWK 241
            R   LG +   +   + +E WSP EV  FE AI + GK+FY+I+K +++K+TK+ IEFYY WK +SHY  W+
Sbjct:  226 RARLLGQVDSDLVPMSPLEKWSPHEVVVFEAAICVYGKDFYQISKAIKTKTTKEVIEFYYSWKFSSHYYSWR 297          
BLAST of NO03G01120 vs. NCBI_GenBank
Match: CEM28293.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 79.0 bits (193), Expect = 2.500e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 0
Query:  181 RRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWK 241
            R    I+ W P EV  FEGAI   GK+F++IAKL+ +K+TK+CI+FYY+WK TS Y+ WK
Sbjct:  329 RHSHTIDLWGPKEVMIFEGAICRYGKDFHKIAKLVETKTTKECIDFYYLWKKTSRYRHWK 388          
The following BLAST results are available for this feature:
BLAST of NO03G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29546.15.100e-6573.66myb dna binding protein transcription factor-like ... [more]
CBJ29293.19.700e-3253.04conserved unknown protein [Ectocarpus siliculosus][more]
XP_002176665.13.800e-2847.46predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX15706.13.900e-2545.08hypothetical protein FisN_3Hh180 [Fistulifera sola... [more]
GAX15741.11.100e-2444.26hypothetical protein FisN_3Lh180 [Fistulifera sola... [more]
GBG33861.17.000e-1446.75Mesoderm induction early response protein 1 [Auran... [more]
ETO09978.12.700e-1350.70hypothetical protein RFI_27398 [Reticulomyxa filos... [more]
CEP00482.11.700e-1242.86hypothetical protein PBRA_001536 [Plasmodiophora b... [more]
OAO12229.11.500e-1145.83MYB DNA binding protein/ transcription factor-like... [more]
CEM28293.12.500e-1155.00unnamed protein product [Vitrella brassicaformis C... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005804NSK005804Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01120.1NO03G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|2397gene_1285Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g44gene1082Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01120.1NO03G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01120 ID=NO03G01120|Name=NO03G01120|organism=Nannochloropsis oceanica|type=gene|length=1695bp
AAAAAAAGCGTCATTTTGATTTCTTCTTTCTCCTCTCTCTTGCCACTTTG
GCTTTCCTTATGCGCGTGCTCAGAGCCTCAACACCACGCTCACCCGCTCG
AAGGTCCACCGGTCACTGGACCCGCACTTCTATTAAAAGTGCCAGCTTAG
AGGGTGAGTGGGAAAGTGAGGAGCCACTTGAGTGACGGCCCCATTTCAGC
GAGTGTGGGAGGGGAGGGTTGGTGCACAGACATGAGGGCTCGATGCGCCC
CAAGGGCCAAAACAAAAGGACCAGGACATACCATAAAAGGCACGCGTACA
TCCTGAGCATGGCTCTATCCATTTTCTTCTCGCCTGTGCGGCTCGTCTTT
TCCTGTGCAATTTTGTCAATTTTTATCCAGGTTTTGTCACCTCGCACGTC
GGTCACCTCGCCGCCCTCTGGAGGTAGAAATCAAGGGCCTGGCCGAGATT
GGCTGTTTGAGAGGACAAGCCATTCTCAACCCCCTCTTGAAATCATTTCT
TATCGACTCTGGAGAACAGGGAGAGCCAAGGTTTGAAGCGACTAGGCAGG
CAGCAGAAGCATGACCACTGTGGAGAGCGACGGAGGAGGCAGCAGCGTGG
TGATGCAAGTTGCGGACGAGGGTGACAAGgtgagtgggacacatgagaca
ccgcatccccggtcccacgtgccaaagacatttcttatcgagcgtatatc
tgcacatatgaactccacaaaatacagCAATCAGGAGGCAAGCCTGGGAT
CATGGGCGGCGCGCGCACAAGCCTTCGCAACCGCAAAGAAGACGGCGGGG
GTAACAACAGTAATCACGACAACAACAACGGCGGCAGCACCAATAATAGT
GGCACCAGCGCTGGAGGCGGACGCAGTGGCAACAAGGATGGGGAAGGACG
CAGCAGTGGACGGATCAGAAGCTCGGGGGACAACGACAGCACGAGAATCG
GCCCCAGCGGGAGCCTCAGCACTACCGCCAACACCACCAAGAAAAGCAAA
GCCGAAGGTGGGGGCGGGCCCGGCCGCGGCAGAGCCCCCGATCGATGGCG
TTCTCAAAAAATGGCAGAGGACTACATAAATTTGGTCGGGGACTTGATGT
ACCCAAAAGTGGGCTTCGGGCCATATGGTTATGATGCGGTCAAGGGGGAG
ATTCCGTTAGAGAGGCCGAACACCCTGGGAGCGATCATGTGCCCGGTGCG
GAGGCGGACAGTGATCGAGCATTGGAGTCCGTTTGAAGTGGCGTGTTTCG
AGGGGGCGATAATGCTGGTTGGGAAAAACTTTTATGAGATTGCCAAGTTG
TTGCGGAGTAAGAGCACCAAGGATTGCATTGAGTTTTATTATGTGTGGAA
GATGACAAGTCATTACCAACAATGGAAGCGGGGGTTTGAGCCGTTGGATC
CTCATCCATTTTCGATTCTCCCGCAAGATGATGACTAAGTGGAGATGTGG
AAAAGCTGAGAAGGAGGTGTGGTCGGCAGCAGGATAAGGGGGAAGATGAG
GAAGGAGGAAAGAAAGGGTGGCAAGCAGGGATGGGGTGACAATAGATATA
CGTTCAATCAATAGTTACGATAGGACAAAATTGTATAATTGACTACGAGG
TGGCGTGCGTGTATGCGGAGAAACGGGGGAAAAGTGGCGACACGAAATAA
AGAAGAAACAAAGACGTCGCACCCAGACAGGATGGAGAAATGACA
back to top

protein sequence of NO03G01120.1

>NO03G01120.1-protein ID=NO03G01120.1-protein|Name=NO03G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MTTVESDGGGSSVVMQVADEGDKQSGGKPGIMGGARTSLRNRKEDGGGNN
SNHDNNNGGSTNNSGTSAGGGRSGNKDGEGRSSGRIRSSGDNDSTRIGPS
GSLSTTANTTKKSKAEGGGGPGRGRAPDRWRSQKMAEDYINLVGDLMYPK
VGFGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGA
IMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGFEPLDPHP
FSILPQDDD*
back to top
Synonyms
Publications