NO03G01120.1, NO03G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01120.1
Unique NameNO03G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1597
Alignment locationchr3:349311..351005 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:349311..351005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01120.1 vs.
Match: EWM29546.1 (myb dna binding protein transcription factor-like protein [Nannochloropsis gaditana])

HSP 1 Score: 320.5 bits (820), Expect = 4.900e-84
Identity = 175/260 (67.31%), Postives = 208/260 (80.00%), Query Frame = 0 
Query:    2 TTVESDGGGSSVVMQVADEGDKQSGGKPGIMGGARTSLRNRKEDGGGN-NSNHDNNNGGSTNNSGTSAGGGRSGNKDGEGRSSGRIRSSGDNDSTRIGPSGSL-STTANTTKKSKAEG-GGGPGRGRAPDRWRSQKMAEDYINLVGDLMYPKVGFGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGFEPLDPHPFSILPQDD 259
            TT+ESDGG  SV+M+   E DKQS  KPGIMG  R SLR+R+ +G  + +SN +NN+  S N +  +AG     +K+  GRSS RI++S + DST  GPSG+  ST+A + K+SK EG G G G+G+  +RWR+Q+MAEDY+NLVGDLMYPKV FGPYGYD  KGEIPLERPNTLG +MCP RRRTV+EHWSPFEVACFEGAI+LVGKNFYEI+KLL SKSTK+CIEFYYVWKMTSHYQQWKR FEPLDPHPFSILP D+
Sbjct:    3 TTMESDGG--SVMMEDIQENDKQSELKPGIMG-VRGSLRSRRREGEEDADSNANNNSNASVNTTIINAG---HNDKESVGRSSARIKNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE 256
The following BLAST results are available for this feature:
BLAST of NO03G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29546.14.900e-8467.31myb dna binding protein transcription factor-like ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01120NO03G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01120.1NO03G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01120.1.cds1NO03G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G01120.1.cds2NO03G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01120.1 ID=NO03G01120.1|Name=NO03G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
AAAAAAAGCGTCATTTTGATTTCTTCTTTCTCCTCTCTCTTGCCACTTTG
GCTTTCCTTATGCGCGTGCTCAGAGCCTCAACACCACGCTCACCCGCTCG
AAGGTCCACCGGTCACTGGACCCGCACTTCTATTAAAAGTGCCAGCTTAG
AGGGTGAGTGGGAAAGTGAGGAGCCACTTGAGTGACGGCCCCATTTCAGC
GAGTGTGGGAGGGGAGGGTTGGTGCACAGACATGAGGGCTCGATGCGCCC
CAAGGGCCAAAACAAAAGGACCAGGACATACCATAAAAGGCACGCGTACA
TCCTGAGCATGGCTCTATCCATTTTCTTCTCGCCTGTGCGGCTCGTCTTT
TCCTGTGCAATTTTGTCAATTTTTATCCAGGTTTTGTCACCTCGCACGTC
GGTCACCTCGCCGCCCTCTGGAGGTAGAAATCAAGGGCCTGGCCGAGATT
GGCTGTTTGAGAGGACAAGCCATTCTCAACCCCCTCTTGAAATCATTTCT
TATCGACTCTGGAGAACAGGGAGAGCCAAGGTTTGAAGCGACTAGGCAGG
CAGCAGAAGCATGACCACTGTGGAGAGCGACGGAGGAGGCAGCAGCGTGG
TGATGCAAGTTGCGGACGAGGGTGACAAGCAATCAGGAGGCAAGCCTGGG
ATCATGGGCGGCGCGCGCACAAGCCTTCGCAACCGCAAAGAAGACGGCGG
GGGTAACAACAGTAATCACGACAACAACAACGGCGGCAGCACCAATAATA
GTGGCACCAGCGCTGGAGGCGGACGCAGTGGCAACAAGGATGGGGAAGGA
CGCAGCAGTGGACGGATCAGAAGCTCGGGGGACAACGACAGCACGAGAAT
CGGCCCCAGCGGGAGCCTCAGCACTACCGCCAACACCACCAAGAAAAGCA
AAGCCGAAGGTGGGGGCGGGCCCGGCCGCGGCAGAGCCCCCGATCGATGG
CGTTCTCAAAAAATGGCAGAGGACTACATAAATTTGGTCGGGGACTTGAT
GTACCCAAAAGTGGGCTTCGGGCCATATGGTTATGATGCGGTCAAGGGGG
AGATTCCGTTAGAGAGGCCGAACACCCTGGGAGCGATCATGTGCCCGGTG
CGGAGGCGGACAGTGATCGAGCATTGGAGTCCGTTTGAAGTGGCGTGTTT
CGAGGGGGCGATAATGCTGGTTGGGAAAAACTTTTATGAGATTGCCAAGT
TGTTGCGGAGTAAGAGCACCAAGGATTGCATTGAGTTTTATTATGTGTGG
AAGATGACAAGTCATTACCAACAATGGAAGCGGGGGTTTGAGCCGTTGGA
TCCTCATCCATTTTCGATTCTCCCGCAAGATGATGACTAAGTGGAGATGT
GGAAAAGCTGAGAAGGAGGTGTGGTCGGCAGCAGGATAAGGGGGAAGATG
AGGAAGGAGGAAAGAAAGGGTGGCAAGCAGGGATGGGGTGACAATAGATA
TACGTTCAATCAATAGTTACGATAGGACAAAATTGTATAATTGACTACGA
GGTGGCGTGCGTGTATGCGGAGAAACGGGGGAAAAGTGGCGACACGAAAT
AAAGAAGAAACAAAGACGTCGCACCCAGACAGGATGGAGAAATGACA
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protein sequence of NO03G01120.1

>NO03G01120.1-protein ID=NO03G01120.1-protein|Name=NO03G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MTTVESDGGGSSVVMQVADEGDKQSGGKPGIMGGARTSLRNRKEDGGGNN
SNHDNNNGGSTNNSGTSAGGGRSGNKDGEGRSSGRIRSSGDNDSTRIGPS
GSLSTTANTTKKSKAEGGGGPGRGRAPDRWRSQKMAEDYINLVGDLMYPK
VGFGPYGYDAVKGEIPLERPNTLGAIMCPVRRRTVIEHWSPFEVACFEGA
IMLVGKNFYEIAKLLRSKSTKDCIEFYYVWKMTSHYQQWKRGFEPLDPHP
FSILPQDDD*
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mRNA from alignment at chr3:349311..351005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01120.1 ID=NO03G01120.1|Name=NO03G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp|location=Sequence derived from alignment at chr3:349311..351005- (Nannochloropsis oceanica)
AAAAAAAGCGTCATTTTGATTTCTTCTTTCTCCTCTCTCTTGCCACTTTG
GCTTTCCTTATGCGCGTGCTCAGAGCCTCAACACCACGCTCACCCGCTCG
AAGGTCCACCGGTCACTGGACCCGCACTTCTATTAAAAGTGCCAGCTTAG
AGGGTGAGTGGGAAAGTGAGGAGCCACTTGAGTGACGGCCCCATTTCAGC
GAGTGTGGGAGGGGAGGGTTGGTGCACAGACATGAGGGCTCGATGCGCCC
CAAGGGCCAAAACAAAAGGACCAGGACATACCATAAAAGGCACGCGTACA
TCCTGAGCATGGCTCTATCCATTTTCTTCTCGCCTGTGCGGCTCGTCTTT
TCCTGTGCAATTTTGTCAATTTTTATCCAGGTTTTGTCACCTCGCACGTC
GGTCACCTCGCCGCCCTCTGGAGGTAGAAATCAAGGGCCTGGCCGAGATT
GGCTGTTTGAGAGGACAAGCCATTCTCAACCCCCTCTTGAAATCATTTCT
TATCGACTCTGGAGAACAGGGAGAGCCAAGGTTTGAAGCGACTAGGCAGG
CAGCAGAAGCATGACCACTGTGGAGAGCGACGGAGGAGGCAGCAGCGTGG
TGATGCAAGTTGCGGACGAGGGTGACAAGGTGAGTGGGACACATGAGACA
CCGCATCCCCGGTCCCACGTGCCAAAGACATTTCTTATCGAGCGTATATC
TGCACATATGAACTCCACAAAATACAGCAATCAGGAGGCAAGCCTGGGAT
CATGGGCGGCGCGCGCACAAGCCTTCGCAACCGCAAAGAAGACGGCGGGG
GTAACAACAGTAATCACGACAACAACAACGGCGGCAGCACCAATAATAGT
GGCACCAGCGCTGGAGGCGGACGCAGTGGCAACAAGGATGGGGAAGGACG
CAGCAGTGGACGGATCAGAAGCTCGGGGGACAACGACAGCACGAGAATCG
GCCCCAGCGGGAGCCTCAGCACTACCGCCAACACCACCAAGAAAAGCAAA
GCCGAAGGTGGGGGCGGGCCCGGCCGCGGCAGAGCCCCCGATCGATGGCG
TTCTCAAAAAATGGCAGAGGACTACATAAATTTGGTCGGGGACTTGATGT
ACCCAAAAGTGGGCTTCGGGCCATATGGTTATGATGCGGTCAAGGGGGAG
ATTCCGTTAGAGAGGCCGAACACCCTGGGAGCGATCATGTGCCCGGTGCG
GAGGCGGACAGTGATCGAGCATTGGAGTCCGTTTGAAGTGGCGTGTTTCG
AGGGGGCGATAATGCTGGTTGGGAAAAACTTTTATGAGATTGCCAAGTTG
TTGCGGAGTAAGAGCACCAAGGATTGCATTGAGTTTTATTATGTGTGGAA
GATGACAAGTCATTACCAACAATGGAAGCGGGGGTTTGAGCCGTTGGATC
CTCATCCATTTTCGATTCTCCCGCAAGATGATGACTAAGTGGAGATGTGG
AAAAGCTGAGAAGGAGGTGTGGTCGGCAGCAGGATAAGGGGGAAGATGAG
GAAGGAGGAAAGAAAGGGTGGCAAGCAGGGATGGGGTGACAATAGATATA
CGTTCAATCAATAGTTACGATAGGACAAAATTGTATAATTGACTACGAGG
TGGCGTGCGTGTATGCGGAGAAACGGGGGAAAAGTGGCGACACGAAATAA
AGAAGAAACAAAGACGTCGCACCCAGACAGGATGGAGAAATGACA
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Coding sequence (CDS) from alignment at chr3:349311..351005-

>NO03G01120.1 ID=NO03G01120.1|Name=NO03G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr3:349311..351005- (Nannochloropsis oceanica)
ATGACCACTGTGGAGAGCGACGGAGGAGGCAGCAGCGTGGTGATGCAAGT
TGCGGACGAGGGTGACAAGCAATCAGGAGGCAAGCCTGGGATCATGGGCG
GCGCGCGCACAAGCCTTCGCAACCGCAAAGAAGACGGCGGGGGTAACAAC
AGTAATCACGACAACAACAACGGCGGCAGCACCAATAATAGTGGCACCAG
CGCTGGAGGCGGACGCAGTGGCAACAAGGATGGGGAAGGACGCAGCAGTG
GACGGATCAGAAGCTCGGGGGACAACGACAGCACGAGAATCGGCCCCAGC
GGGAGCCTCAGCACTACCGCCAACACCACCAAGAAAAGCAAAGCCGAAGG
TGGGGGCGGGCCCGGCCGCGGCAGAGCCCCCGATCGATGGCGTTCTCAAA
AAATGGCAGAGGACTACATAAATTTGGTCGGGGACTTGATGTACCCAAAA
GTGGGCTTCGGGCCATATGGTTATGATGCGGTCAAGGGGGAGATTCCGTT
AGAGAGGCCGAACACCCTGGGAGCGATCATGTGCCCGGTGCGGAGGCGGA
CAGTGATCGAGCATTGGAGTCCGTTTGAAGTGGCGTGTTTCGAGGGGGCG
ATAATGCTGGTTGGGAAAAACTTTTATGAGATTGCCAAGTTGTTGCGGAG
TAAGAGCACCAAGGATTGCATTGAGTTTTATTATGTGTGGAAGATGACAA
GTCATTACCAACAATGGAAGCGGGGGTTTGAGCCGTTGGATCCTCATCCA
TTTTCGATTCTCCCGCAAGATGATGACTAA
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Synonyms
Publications