NO03G01000, NO03G01000 (gene) Nannochloropsis oceanica

Overview
NameNO03G01000
Unique NameNO03G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr3:323658..325094 +

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Properties
Property NameValue
DescriptionU2 snrnp component ist3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:323658..325094 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: XP_005853445.1 (u2 snrnp component ist3 [Nannochloropsis gaditana CCMP526] >EKU22917.1 u2 snrnp component ist3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.9 bits (572), Expect = 4.800e-55
Identity = 108/117 (92.31%), Postives = 111/117 (94.87%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPK 118
            MNVVREIQRLNEKELQRGTA  EGSWH QYKDSAWVFVGSLP QLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAF+KYEDQRSTILAVDN NG KLL+RTLRVDHKEKY+LPK
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPSQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYSLPK 117
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: XP_024573115.1 (rna-binding motif x-linked 2 [Plasmopara halstedii] >CEG36746.1 rna-binding motif x-linked 2 [Plasmopara halstedii])

HSP 1 Score: 186.4 bits (472), Expect = 1.900e-43
Identity = 100/172 (58.14%), Postives = 111/172 (64.53%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGEHDLSKGVDLFAPVKE 173
            MNVV EIQRLNE+EL+       GSWH +YKDSAWVFVG LP +LSEGDVLCV+SQ+GEIED+HLVRD  TGKSKGFAF+K+EDQRSTILAVDN NG KLLDR LRVDH  KY LPK                                    L    DL KGV++FA VKE
Sbjct:    1 MNVVAEIQRLNERELEL-NVPLSGSWHQKYKDSAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPK-------ELQEESDSEDDDHVRKQRGLPGHAYEGKELASSFDLEKGVNVFATVKE 164
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: XP_008908853.1 (hypothetical protein PPTG_13175 [Phytophthora parasitica INRA-310] >ETI42347.1 hypothetical protein F443_12518 [Phytophthora parasitica P1569] >ETK82356.1 hypothetical protein L915_12242 [Phytophthora parasitica] >ETL88987.1 hypothetical protein L917_11997 [Phytophthora parasitica] >ETM42226.1 hypothetical protein L914_12084 [Phytophthora parasitica] >ETN05789.1 hypothetical protein PPTG_13175 [Phytophthora parasitica INRA-310] >KUF82457.1 RNA-binding motif protein [Phytophthora nicotianae] >KUF92275.1 hypothetical protein AM588_10005930 [Phytophthora nicotianae])

HSP 1 Score: 181.4 bits (459), Expect = 6.100e-42
Identity = 97/172 (56.40%), Postives = 110/172 (63.95%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGEHDLSKGVDLFAPVKE 173
            MNVV EIQRLNE+EL+       GSWH +Y +SAWVFVG LP +LSEGDVLCV+SQ+GEIED+HLVRD  TGKSKGFAF+K+EDQRSTILAVDN NG KLLDR LRVDH  KY LPK                                    L  + DL KGVD+FA  +E
Sbjct:    1 MNVVAEIQRLNERELEL-NVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPK--------ELQEDSDSEDEGDRKQRGLPGHAYEGKELASDFDLHKGVDVFAAPEE 163
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: ETL35748.1 (hypothetical protein L916_12161 [Phytophthora parasitica] >ETP12073.1 hypothetical protein F441_12485 [Phytophthora parasitica CJ01A1] >ETP40191.1 hypothetical protein F442_12430 [Phytophthora parasitica P10297])

HSP 1 Score: 181.4 bits (459), Expect = 6.100e-42
Identity = 97/172 (56.40%), Postives = 110/172 (63.95%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGEHDLSKGVDLFAPVKE 173
            MNVV EIQRLNE+EL+       GSWH +Y +SAWVFVG LP +LSEGDVLCV+SQ+GEIED+HLVRD  TGKSKGFAF+K+EDQRSTILAVDN NG KLLDR LRVDH  KY LPK                                    L  + DL KGVD+FA  +E
Sbjct:    1 MNVVAEIQRLNERELEL-NVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPK--------ELQEDSDSEDEGDRKQRGLPGHAYEGKELASDFDLHKGVDVFAAPEE 163
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: CBJ30461.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 179.1 bits (453), Expect = 3.000e-41
Identity = 89/174 (51.15%), Postives = 113/174 (64.94%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALP-KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGEHDLSKGVDLFAPVKEG 174
            MNV++EI+R+NE+EL++G  S + SWH +YKDSAWVF G  P  L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+Q+STILAVDNFNG  LL RT+RVDHK KY+LP +                                    L   H+  KGVD+FA  ++G
Sbjct:    1 MNVIQEIKRINERELEQG-VSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQG 173
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: XP_002293918.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED88927.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 177.6 bits (449), Expect = 8.800e-41
Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPK 118
            MNVV EIQR+N+ EL++G   T  SWHD+YKDSAW+  G+LPL L+EGDVLC++SQ+GEI+D+HLVRDK +GKSKGFAFVKYED RS +LAVDN  G  +L RTLRVDH E Y LPK
Sbjct:    1 MNVVNEIQRINDLELEKGLTHTSASWHDKYKDSAWIHAGNLPLNLTEGDVLCILSQYGEIDDIHLVRDKDSGKSKGFAFVKYEDARSCVLAVDNLCGSMVLGRTLRVDHVENYRLPK 117
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: OWZ05842.1 (U2 snRNP component IST3 [Phytophthora megakarya])

HSP 1 Score: 177.6 bits (449), Expect = 8.800e-41
Identity = 85/117 (72.65%), Postives = 96/117 (82.05%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPK 118
            MNVV EIQRLNE+EL+       GSWH +Y +SAW+F+G LP +LSEGDVLCV+SQ+GEIED+HLVRD  TGKSKGFAFVKY DQRST+LAVDN NG KLLDR LRVDH  KY LPK
Sbjct:    1 MNVVAEIQRLNERELEL-NVPLSGSWHQKYHESAWIFIGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFVKYADQRSTVLAVDNLNGFKLLDRVLRVDHVLKYKLPK 116
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: POM66655.1 (U2 snRNP component IST3 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 177.6 bits (449), Expect = 8.800e-41
Identity = 85/117 (72.65%), Postives = 96/117 (82.05%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPK 118
            MNVV EIQRLNE+EL+       GSWH +Y +SAW+F+G LP +LSEGDVLCV+SQ+GEIED+HLVRD  TGKSKGFAF+KYEDQRSTILAVDN N  KLLDR LRVDH  KY LPK
Sbjct:    1 MNVVAEIQRLNERELEL-DVPLSGSWHQKYSESAWIFIGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKYEDQRSTILAVDNLNSFKLLDRVLRVDHVLKYKLPK 116
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: OQS02155.1 (U2 snRNP component IST3 [Thraustotheca clavata])

HSP 1 Score: 177.2 bits (448), Expect = 1.100e-40
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPK 118
            MNVV+EI+RLN++EL +G    EGSWH  Y+DSAW++VGSL  +LSEGDVLCV SQ+GEIED++LVRDK TGKS GFAF+KYED RST+LAVDNFNG  LL+RTLRVDH  KY LPK
Sbjct:    1 MNVVKEIERLNQQELDQG-IGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPK 116
[Close]
BLAST of NO03G01000 vs. NCBI_GenBank
Match: XP_002998485.1 (U2 snRNP component IST3 [Phytophthora infestans T30-4] >EEY69838.1 U2 snRNP component IST3 [Phytophthora infestans T30-4])

HSP 1 Score: 176.4 bits (446), Expect = 2.000e-40
Identity = 85/117 (72.65%), Postives = 96/117 (82.05%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPK 118
            MNVV EIQRLNE+EL+       GSWH +Y +SAWVFVG LP +LSEGDVLCV+SQ+GEIED+HLVRD  TGKSKGF F+K+EDQRSTILAVDN NG KLL+R LRVDH  KY LPK
Sbjct:    1 MNVVAEIQRLNERELEL-NVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFVFIKFEDQRSTILAVDNLNGFKLLERVLRVDHVLKYKLPK 116
The following BLAST results are available for this feature:
BLAST of NO03G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853445.14.800e-5592.31u2 snrnp component ist3 [Nannochloropsis gaditana ... [more]
XP_024573115.11.900e-4358.14rna-binding motif x-linked 2 [Plasmopara halstedii... [more]
XP_008908853.16.100e-4256.40hypothetical protein PPTG_13175 [Phytophthora para... [more]
ETL35748.16.100e-4256.40hypothetical protein L916_12161 [Phytophthora para... [more]
CBJ30461.13.000e-4151.15conserved unknown protein [Ectocarpus siliculosus][more]
XP_002293918.18.800e-4168.38predicted protein, partial [Thalassiosira pseudona... [more]
OWZ05842.18.800e-4172.65U2 snRNP component IST3 [Phytophthora megakarya][more]
POM66655.18.800e-4172.65U2 snRNP component IST3 [Phytophthora palmivora va... [more]
OQS02155.11.100e-4071.79U2 snRNP component IST3 [Thraustotheca clavata][more]
XP_002998485.12.000e-4072.65U2 snRNP component IST3 [Phytophthora infestans T3... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005817NSK005817Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01000.1NO03G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535206gene_1270Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01000.1NO03G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01000 ID=NO03G01000|Name=NO03G01000|organism=Nannochloropsis oceanica|type=gene|length=1437bp
ACAGAATCTCACCACGACTACGGGAATGAACGTGGTTCGTGAAATTCAGC
GGCTCAATGAAAAGGAGCTCCAGCGGGGGACCGCCTCCACCGAAGGGAGT
TGGCATGACCAGTATAAGGACTCTGCGTGGGTATTTGTGGGTAGCTTGCC
CCTCCAATTGAGCGAGGGAGATGTGCTGTGTGTCATGAGTCAATGGGGGG
AGATTGAAGATTTGCATTTGGTTCGAGATAAGGGCACGGGAAAGAGTAAG
GGGTTTGCGTTTGTGAAGTATGAGGACCAGAGGAGCACGATCTTGGCGGT
AGATAATTTCAATGGAGGCAAATTGCTAGATCGAACATTGAGGGTAGATC
ATAAAGAAAAGTATGCGTTGCCGAAAGAGGTGCTGGAGAAGGAGGAGAAC
AAGGAGAAGGCACTAAAGGAGAAAGAGGGAGGGAAGGGAGAGGGGGGAAG
GTGGAAGCCGGGGCATGCGTATGAAGGGAAGAGTTTGGTGGGGGAGCATG
ATTTGAGTAAGGGGGTGGATTTGTTTGCACCGGTGAAGGAGGGAGGTAGG
GAGGGAGGGAAGGAGGGGAAGGAGGAGGTGGATGTGGAGGAATTTGTGTC
ATCGGGGAGTGAGGAGGAGGTGATGGGGGGGGATAAGAAGAAGAAGAGGA
AAAAGGAGGAGAAGAACAAGAGGAAGGAGGCCAAAAAGGCGAAGAAAAAG
GAGAAGAAGAAGAAAAGGAAGATGGAAGAGGAGGCCTTGGACCGGCTGGC
GGATGGAAGGGAAGGAGGGAGGGAAGGAAGGAGGGAGGGTGAGAGACGAC
GGACGCAGAGTAGGAGCCGTAGCGGCGATCGAAACGGAGGAGGGAAGGAG
GGAGATGAGGAGAGGAGGAACAGTAGAAGATTTGGCGACAGAGGAGAAAA
AGAGGGAGGAAGGGATGGAGCAAGAGGGCGGTCACCTTCGAGGGAGAGGG
AGAAGGAGAGGGATGGACGGGGGATGCCGCGTGGGAAATGGGAACGTGGG
GAGGAGGCAAGGGGGGAGGAAGAGGATGAGGAAGGACGGCCTTCGTACTC
TAAGAAAGCAGCGGCTGCGTCGCTACCTCTGCCACCACTACCGACCGATG
GACAGCCATCTTGGAGGGGGAAATATGATCCGCATGCACGGCAGGAGCAG
GGGGGGCGAGGAGGGAGGGAGGGAGGGAGGGGAGGAGGGGGCTATGGAGG
GAGGGGTTTTGACACAGGAGGTGCGGGAGGACGGAGTATGTTCGGACAGG
GTCTGAAGAGAGATGAGGGAGGGCGAGGAGTTAGGGGAGGAGGGAGGGGA
GGAGGAGGGGGGAGGGGTAGTATGACGGGAATCGCCGGATTAAATCGTCG
GCGGTGAGGGGGGAGGGAGACAGAGATGGAAGGATAGTGTATATAAACAC
AACAAGTCAAAAGAAATGAATTCAAATATGAAAGGCA
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protein sequence of NO03G01000.1

>NO03G01000.1-protein ID=NO03G01000.1-protein|Name=NO03G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDV
LCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKL
LDRTLRVDHKEKYALPKEVLEKEENKEKALKEKEGGKGEGGRWKPGHAYE
GKSLVGEHDLSKGVDLFAPVKEGGREGGKEGKEEVDVEEFVSSGSEEEVM
GGDKKKKRKKEEKNKRKEAKKAKKKEKKKKRKMEEEALDRLADGREGGRE
GRREGERRRTQSRSRSGDRNGGGKEGDEERRNSRRFGDRGEKEGGRDGAR
GRSPSREREKERDGRGMPRGKWERGEEARGEEEDEEGRPSYSKKAAAASL
PLPPLPTDGQPSWRGKYDPHARQEQGGRGGREGGRGGGGYGGRGFDTGGA
GGRSMFGQGLKRDEGGRGVRGGGRGGGGGRGSMTGIAGLNRRR*
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Synonyms
Publications