NO03G01000.1, NO03G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G01000.1
Unique NameNO03G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr3:323658..325094 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:323658..325094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G01000.1 vs.
Match: XP_005853445.1 (u2 snrnp component ist3 [Nannochloropsis gaditana CCMP526]; EKU22917.1 u2 snrnp component ist3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 225.3 bits (573), Expect = 3.700e-55
Identity = 109/118 (92.37%), Postives = 112/118 (94.92%), Query Frame = 0 
Query:    1 MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKLLDRTLRVDHKEKYALPKE 119
            MNVVREIQRLNEKELQRGTA  EGSWH QYKDSAWVFVGSLP QLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAF+KYEDQRSTILAVDN NG KLL+RTLRVDHKEKY+LPKE
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPSQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYSLPKE 118
The following BLAST results are available for this feature:
BLAST of NO03G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853445.13.700e-5592.37u2 snrnp component ist3 [Nannochloropsis gaditana ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01000NO03G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G01000.1NO03G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G01000.1.cds1NO03G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G01000.1 ID=NO03G01000.1|Name=NO03G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
ACAGAATCTCACCACGACTACGGGAATGAACGTGGTTCGTGAAATTCAGC
GGCTCAATGAAAAGGAGCTCCAGCGGGGGACCGCCTCCACCGAAGGGAGT
TGGCATGACCAGTATAAGGACTCTGCGTGGGTATTTGTGGGTAGCTTGCC
CCTCCAATTGAGCGAGGGAGATGTGCTGTGTGTCATGAGTCAATGGGGGG
AGATTGAAGATTTGCATTTGGTTCGAGATAAGGGCACGGGAAAGAGTAAG
GGGTTTGCGTTTGTGAAGTATGAGGACCAGAGGAGCACGATCTTGGCGGT
AGATAATTTCAATGGAGGCAAATTGCTAGATCGAACATTGAGGGTAGATC
ATAAAGAAAAGTATGCGTTGCCGAAAGAGGTGCTGGAGAAGGAGGAGAAC
AAGGAGAAGGCACTAAAGGAGAAAGAGGGAGGGAAGGGAGAGGGGGGAAG
GTGGAAGCCGGGGCATGCGTATGAAGGGAAGAGTTTGGTGGGGGAGCATG
ATTTGAGTAAGGGGGTGGATTTGTTTGCACCGGTGAAGGAGGGAGGTAGG
GAGGGAGGGAAGGAGGGGAAGGAGGAGGTGGATGTGGAGGAATTTGTGTC
ATCGGGGAGTGAGGAGGAGGTGATGGGGGGGGATAAGAAGAAGAAGAGGA
AAAAGGAGGAGAAGAACAAGAGGAAGGAGGCCAAAAAGGCGAAGAAAAAG
GAGAAGAAGAAGAAAAGGAAGATGGAAGAGGAGGCCTTGGACCGGCTGGC
GGATGGAAGGGAAGGAGGGAGGGAAGGAAGGAGGGAGGGTGAGAGACGAC
GGACGCAGAGTAGGAGCCGTAGCGGCGATCGAAACGGAGGAGGGAAGGAG
GGAGATGAGGAGAGGAGGAACAGTAGAAGATTTGGCGACAGAGGAGAAAA
AGAGGGAGGAAGGGATGGAGCAAGAGGGCGGTCACCTTCGAGGGAGAGGG
AGAAGGAGAGGGATGGACGGGGGATGCCGCGTGGGAAATGGGAACGTGGG
GAGGAGGCAAGGGGGGAGGAAGAGGATGAGGAAGGACGGCCTTCGTACTC
TAAGAAAGCAGCGGCTGCGTCGCTACCTCTGCCACCACTACCGACCGATG
GACAGCCATCTTGGAGGGGGAAATATGATCCGCATGCACGGCAGGAGCAG
GGGGGGCGAGGAGGGAGGGAGGGAGGGAGGGGAGGAGGGGGCTATGGAGG
GAGGGGTTTTGACACAGGAGGTGCGGGAGGACGGAGTATGTTCGGACAGG
GTCTGAAGAGAGATGAGGGAGGGCGAGGAGTTAGGGGAGGAGGGAGGGGA
GGAGGAGGGGGGAGGGGTAGTATGACGGGAATCGCCGGATTAAATCGTCG
GCGGTGAGGGGGGAGGGAGACAGAGATGGAAGGATAGTGTATATAAACAC
AACAAGTCAAAAGAAATGAATTCAAATATGAAAGGCA
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protein sequence of NO03G01000.1

>NO03G01000.1-protein ID=NO03G01000.1-protein|Name=NO03G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MNVVREIQRLNEKELQRGTASTEGSWHDQYKDSAWVFVGSLPLQLSEGDV
LCVMSQWGEIEDLHLVRDKGTGKSKGFAFVKYEDQRSTILAVDNFNGGKL
LDRTLRVDHKEKYALPKEVLEKEENKEKALKEKEGGKGEGGRWKPGHAYE
GKSLVGEHDLSKGVDLFAPVKEGGREGGKEGKEEVDVEEFVSSGSEEEVM
GGDKKKKRKKEEKNKRKEAKKAKKKEKKKKRKMEEEALDRLADGREGGRE
GRREGERRRTQSRSRSGDRNGGGKEGDEERRNSRRFGDRGEKEGGRDGAR
GRSPSREREKERDGRGMPRGKWERGEEARGEEEDEEGRPSYSKKAAAASL
PLPPLPTDGQPSWRGKYDPHARQEQGGRGGREGGRGGGGYGGRGFDTGGA
GGRSMFGQGLKRDEGGRGVRGGGRGGGGGRGSMTGIAGLNRRR*
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mRNA from alignment at chr3:323658..325094+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G01000.1 ID=NO03G01000.1|Name=NO03G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr3:323658..325094+ (Nannochloropsis oceanica)
ACAGAATCTCACCACGACTACGGGAATGAACGTGGTTCGTGAAATTCAGC
GGCTCAATGAAAAGGAGCTCCAGCGGGGGACCGCCTCCACCGAAGGGAGT
TGGCATGACCAGTATAAGGACTCTGCGTGGGTATTTGTGGGTAGCTTGCC
CCTCCAATTGAGCGAGGGAGATGTGCTGTGTGTCATGAGTCAATGGGGGG
AGATTGAAGATTTGCATTTGGTTCGAGATAAGGGCACGGGAAAGAGTAAG
GGGTTTGCGTTTGTGAAGTATGAGGACCAGAGGAGCACGATCTTGGCGGT
AGATAATTTCAATGGAGGCAAATTGCTAGATCGAACATTGAGGGTAGATC
ATAAAGAAAAGTATGCGTTGCCGAAAGAGGTGCTGGAGAAGGAGGAGAAC
AAGGAGAAGGCACTAAAGGAGAAAGAGGGAGGGAAGGGAGAGGGGGGAAG
GTGGAAGCCGGGGCATGCGTATGAAGGGAAGAGTTTGGTGGGGGAGCATG
ATTTGAGTAAGGGGGTGGATTTGTTTGCACCGGTGAAGGAGGGAGGTAGG
GAGGGAGGGAAGGAGGGGAAGGAGGAGGTGGATGTGGAGGAATTTGTGTC
ATCGGGGAGTGAGGAGGAGGTGATGGGGGGGGATAAGAAGAAGAAGAGGA
AAAAGGAGGAGAAGAACAAGAGGAAGGAGGCCAAAAAGGCGAAGAAAAAG
GAGAAGAAGAAGAAAAGGAAGATGGAAGAGGAGGCCTTGGACCGGCTGGC
GGATGGAAGGGAAGGAGGGAGGGAAGGAAGGAGGGAGGGTGAGAGACGAC
GGACGCAGAGTAGGAGCCGTAGCGGCGATCGAAACGGAGGAGGGAAGGAG
GGAGATGAGGAGAGGAGGAACAGTAGAAGATTTGGCGACAGAGGAGAAAA
AGAGGGAGGAAGGGATGGAGCAAGAGGGCGGTCACCTTCGAGGGAGAGGG
AGAAGGAGAGGGATGGACGGGGGATGCCGCGTGGGAAATGGGAACGTGGG
GAGGAGGCAAGGGGGGAGGAAGAGGATGAGGAAGGACGGCCTTCGTACTC
TAAGAAAGCAGCGGCTGCGTCGCTACCTCTGCCACCACTACCGACCGATG
GACAGCCATCTTGGAGGGGGAAATATGATCCGCATGCACGGCAGGAGCAG
GGGGGGCGAGGAGGGAGGGAGGGAGGGAGGGGAGGAGGGGGCTATGGAGG
GAGGGGTTTTGACACAGGAGGTGCGGGAGGACGGAGTATGTTCGGACAGG
GTCTGAAGAGAGATGAGGGAGGGCGAGGAGTTAGGGGAGGAGGGAGGGGA
GGAGGAGGGGGGAGGGGTAGTATGACGGGAATCGCCGGATTAAATCGTCG
GCGGTGAGGGGGGAGGGAGACAGAGATGGAAGGATAGTGTATATAAACAC
AACAAGTCAAAAGAAATGAATTCAAATATGAAAGGCA
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Coding sequence (CDS) from alignment at chr3:323658..325094+

>NO03G01000.1 ID=NO03G01000.1|Name=NO03G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr3:323658..325094+ (Nannochloropsis oceanica)
ATGAACGTGGTTCGTGAAATTCAGCGGCTCAATGAAAAGGAGCTCCAGCG
GGGGACCGCCTCCACCGAAGGGAGTTGGCATGACCAGTATAAGGACTCTG
CGTGGGTATTTGTGGGTAGCTTGCCCCTCCAATTGAGCGAGGGAGATGTG
CTGTGTGTCATGAGTCAATGGGGGGAGATTGAAGATTTGCATTTGGTTCG
AGATAAGGGCACGGGAAAGAGTAAGGGGTTTGCGTTTGTGAAGTATGAGG
ACCAGAGGAGCACGATCTTGGCGGTAGATAATTTCAATGGAGGCAAATTG
CTAGATCGAACATTGAGGGTAGATCATAAAGAAAAGTATGCGTTGCCGAA
AGAGGTGCTGGAGAAGGAGGAGAACAAGGAGAAGGCACTAAAGGAGAAAG
AGGGAGGGAAGGGAGAGGGGGGAAGGTGGAAGCCGGGGCATGCGTATGAA
GGGAAGAGTTTGGTGGGGGAGCATGATTTGAGTAAGGGGGTGGATTTGTT
TGCACCGGTGAAGGAGGGAGGTAGGGAGGGAGGGAAGGAGGGGAAGGAGG
AGGTGGATGTGGAGGAATTTGTGTCATCGGGGAGTGAGGAGGAGGTGATG
GGGGGGGATAAGAAGAAGAAGAGGAAAAAGGAGGAGAAGAACAAGAGGAA
GGAGGCCAAAAAGGCGAAGAAAAAGGAGAAGAAGAAGAAAAGGAAGATGG
AAGAGGAGGCCTTGGACCGGCTGGCGGATGGAAGGGAAGGAGGGAGGGAA
GGAAGGAGGGAGGGTGAGAGACGACGGACGCAGAGTAGGAGCCGTAGCGG
CGATCGAAACGGAGGAGGGAAGGAGGGAGATGAGGAGAGGAGGAACAGTA
GAAGATTTGGCGACAGAGGAGAAAAAGAGGGAGGAAGGGATGGAGCAAGA
GGGCGGTCACCTTCGAGGGAGAGGGAGAAGGAGAGGGATGGACGGGGGAT
GCCGCGTGGGAAATGGGAACGTGGGGAGGAGGCAAGGGGGGAGGAAGAGG
ATGAGGAAGGACGGCCTTCGTACTCTAAGAAAGCAGCGGCTGCGTCGCTA
CCTCTGCCACCACTACCGACCGATGGACAGCCATCTTGGAGGGGGAAATA
TGATCCGCATGCACGGCAGGAGCAGGGGGGGCGAGGAGGGAGGGAGGGAG
GGAGGGGAGGAGGGGGCTATGGAGGGAGGGGTTTTGACACAGGAGGTGCG
GGAGGACGGAGTATGTTCGGACAGGGTCTGAAGAGAGATGAGGGAGGGCG
AGGAGTTAGGGGAGGAGGGAGGGGAGGAGGAGGGGGGAGGGGTAGTATGA
CGGGAATCGCCGGATTAAATCGTCGGCGGTGA
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Synonyms
Publications