NO03G00890, NO03G00890 (gene) Nannochloropsis oceanica

Overview
NameNO03G00890
Unique NameNO03G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2139
Alignment locationchr3:293322..295460 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, CCCH-type protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:293322..295460 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011047Quinonprotein_ADH-like_supfam
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
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BLAST of NO03G00890 vs. NCBI_GenBank
Match: EWM29578.1 (Zinc finger, CCCH-type protein [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 1.300e-50
Identity = 172/571 (30.12%), Postives = 229/571 (40.11%), Query Frame = 0 
Query:    1 MAVDAHTVYVGTVKGSLYTIDRDDLSDVQAYRLLHQG--SAISSLCLLQSPSLMVGRPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPCTPLSFSLSSGDARTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSFRLTPEGGKEDEEEIRARLVIGFGNGSFMLLHGSQRXXXXXXXXXXXXXXXXFLPNPPSVFHHLYSLPVSHPACVFLTATGPKSFVAASCPDRLFLWSAXXXXXXXXXXXXXXXXXXXXXXXXLGSEKTEVPVLPL-TSAFSKGAPRRRVERGRPKMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLGLSGRHRLDECCDVALLALKPSPEEXXXXXXDGKEKEVTVVVTACNHDVSLRWWELNSY---SIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSRAVCTAITPAFTAAWDGI-----RGSSSSKHWGGMGTVSLAQAGGVLLSAHLNGSLVVWYVRSRRPVAHFHGLPLLECLKMTPRGMDVLTSYERRILYARQ 561
            +  D+ T+YVGT+KG LYTID +DLSDV+A+RL  +G  S ISSLCL+Q  S++    R                                                                     R     S S+ S D+                                         +    + E   ++ E+I  RLVIGFGNGSFMLLHG+QR                   +P S+ HHLY+LP++ PACVFL A G KSFVAA+CPDRLFLWS                         +   KTE+PV+PL T   S  A +        K                              ++     H  D  CDV +LA+ P  EE      D +     ++VT CNHD  LRWW+LN     ++EE                              +AVCTAITPA  +   G+         S +    +GT+ + QA G+LLS+HLNGS+V+W+V  R+ VA FH LPL E L +T  G+D +  YER I+YAR+
Sbjct:  594 LVADSRTLYVGTLKGVLYTIDLEDLSDVRAHRLWGEGPASTISSLCLMQQ-SVIASTHR----FRPEKILRRGESRRFGEKEEHAKSTPTCSFPPRSDHLDSQGTDLIKSPVLDARSSALPACATQEDRGIEHKSDSILSRDS------------------------GLMRKRSNVPSSSAGRKEKNTASCEISTQEREDIVPRLVIGFGNGSFMLLHGTQRLMSLTLSDTLSAFPSPSCSSPSSLLHHLYTLPLAEPACVFLLAMGRKSFVAAACPDRLFLWS-----------DEDEGKREEGREREMNQPKTEMPVVPLRTFVSSPWALQMEASSNVVK----------TTKGSDGKGQTESGRVVDGAMMEPKDWHSGDAPCDVVMLAIWPELEERHAIEDDDQVASPVIIVTGCNHDDLLRWWDLNDAKGGTMEEAVGHPHPATG-------------------PQAVCTAITPACVSIKRGVMCDVSHQRRSKEELASLGTLCMTQAAGILLSSHLNGSMVLWHVGQRQRVASFHRLPLFESLLLTTVGLDTVACYEREIVYARR 1095
The following BLAST results are available for this feature:
BLAST of NO03G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29578.11.300e-5030.12Zinc finger, CCCH-type protein [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00890.1NO03G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00890.1NO03G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00890 ID=NO03G00890|Name=NO03G00890|organism=Nannochloropsis oceanica|type=gene|length=2139bp
ATGGCGGTCGATGCCCACACGGTCTACGTGGGCACGGTGAAAGGAAGCTT
GTATACAATAGATAGAGACGACCTGAGCGATGTTCAGGCCTATCGCCTTT
TGCATCAAGGAAGCGCCATTTCCTCTTTGTGCCTGTTACAGTCGCCGTCG
CTGATGGTGGGACGACCACGGCGTCGTTCGTTTCCGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTACG
ACAAACATCTCTCTCATTATCAACAGCAGCAGCAACAGCAGCAGCAGTGG
CCGCGGAGCAAGGGGGCCTCTATCGCCTCCTCCTCCCCTGCCTCCTCCTC
CTCTTGCTCCATCGGTTCCTCCTCCTCTCGGCCTTGCACCCCTCTCTCCT
TCTCACTGTCCAGCGGGGATGCTCGTACTGGGGGAGGGAGGGAGGGAGGG
AGGGAAGGCAGTGCCTCCCATAATGTGAGCACGAGCAGCAGCAGTGGTAG
CAGCAGCAGCAGCAGTAGGAGGGGTATGACAACAGGTAGCTACAAGCAGT
CTTTCCGCCTCACACCTGAGGGAGGGAAGGAGGACGAGGAGGAAATCCGT
GCCCGTCTTGTGATTGGCTTTGGCAATGGTTCCTTCATGCTCCTCCATGG
CTCTCAACGCCTTATGCTCATCCCACCCTCCACAAGTTCCTCCTCCTCCC
CCTCTTCGTTTCTCCCTAACCCCCCCTCGGTCTTCCACCACTTGTACTCC
CTACCTGTCTCTCACCCGGCTTGTGTGTTTCTAACAGCCACGGGCCCCAA
ATCCTTTGTTGCCGCCTCTTGTCCTGATCGCCTCTTTTTGTGGTCAGCTG
AAGACGATGAAGAGAAAGAAGAGGAAGAGGAGGAAGAAGAGGTGGAGGAG
GAGGGCGGGGGGAGGGGAGGATTAGGGTCAGAAAAGACTGAGGTGCCGGT
GTTGCCATTGACGAGCGCTTTTTCGAAGGGAGCACCGCGTCGGCGGGTAG
AGAGAGGGAGGCCAAAAATGGAGGAGGAGGAGGAGGTAAATGGTGAAGAG
GATCAAGGTGAGGCGGAGGAGAAGAAGGAGTATGAGGAGTATGAGGAGGA
GGACGACGTGTTGGGGTTGTCGGGACGACATAGGTTGGATGAATGCTGTG
ATGTGGCGTTGCTGGCTTTGAAGCCTTCCCCGGAGGAGGAGGAAGAAGGA
AGGGAGGATGGGAAGGAGAAAGAGGTAACGGTTGTGGTGACGGCATGCAA
TCACGATGTGTCCTTGCGCTGGTGGGAGCTGAATAGCTACAGCATTGAAG
AGAATAAGAAGCAGAGAGAGGAGCAGGAGCAGGAGGAGGGGGAGGGGAGG
AGGAGGAGAGGGAGGCGCACTCGTCGGCCACGGCACCATTCCCGTGCTGT
CTGCACGGCAATTACTCCTGCGTTTACGGCAGCCTGGGACGGGATTCGCG
GCAGCAGCAGCAGTAAGCACTGGGGGGGGATGGGAACTGTGTCGTTGGCA
CAGGCGGGAGGGGTGTTGTTATCCGCTCATTTGAACGGATCGTTGGTGGT
TTGGTATGTCAGGTCGCGTCGACCGGTGGCCCATTTTCACGGCTTGCCGC
TGTTGGAGTGTTTGAAGATGACACCGCGGGGAATGGACGTACTTACTTCC
TATGAGCGACGCATTCTCTATGCAAGACAAGTGGTGATGTTTGGGGCGCC
TGGGGGAGGAGGAAGAGGAAGGGAGTGCCGCGAAGGATCGGAGGAGGATA
ATGCTGGGAATGTCAGCAGTGGCAACGGTGCTTGGGGTGGGAAGCAACGG
GGGAGGGACCGTGGGAAAGGGGGTGGTGGTGGTGTTGGAGGTGGGAGGCC
ACGACGGAAAAACTCGTATGCGTGATTTAAATCTGAGAAAACTGATCACA
CTAGAGTGAAAAGGGCTGTACATGGGAACAAGGACGGCTGTATTAAAAAG
GTGGTGCAGTTCAAAGTCAAGCCCGTAAAAATCTTACTGCCTGTTCCTCG
ATTGGGAGGGAAAGGAGCGTGTATAAAGCAACCATGGTTGACTGTTAGAA
AGCCAGAGCAGGAGATCTGCCAGGAGCCAACAGGGCACTTAAGAAGCCCA
CAAATAAGAGAAGGAAAAAAGATGATTTTAAATATGAGG
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protein sequence of NO03G00890.1

>NO03G00890.1-protein ID=NO03G00890.1-protein|Name=NO03G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MAVDAHTVYVGTVKGSLYTIDRDDLSDVQAYRLLHQGSAISSLCLLQSPS
LMVGRPRRRSFPQQQQQQQQQQQQQQQQQQQQYDKHLSHYQQQQQQQQQW
PRSKGASIASSSPASSSSCSIGSSSSRPCTPLSFSLSSGDARTGGGREGG
REGSASHNVSTSSSSGSSSSSSRRGMTTGSYKQSFRLTPEGGKEDEEEIR
ARLVIGFGNGSFMLLHGSQRLMLIPPSTSSSSSPSSFLPNPPSVFHHLYS
LPVSHPACVFLTATGPKSFVAASCPDRLFLWSAEDDEEKEEEEEEEEVEE
EGGGRGGLGSEKTEVPVLPLTSAFSKGAPRRRVERGRPKMEEEEEVNGEE
DQGEAEEKKEYEEYEEEDDVLGLSGRHRLDECCDVALLALKPSPEEEEEG
REDGKEKEVTVVVTACNHDVSLRWWELNSYSIEENKKQREEQEQEEGEGR
RRRGRRTRRPRHHSRAVCTAITPAFTAAWDGIRGSSSSKHWGGMGTVSLA
QAGGVLLSAHLNGSLVVWYVRSRRPVAHFHGLPLLECLKMTPRGMDVLTS
YERRILYARQVVMFGAPGGGGRGRECREGSEEDNAGNVSSGNGAWGGKQR
GRDRGKGGGGGVGGGRPRRKNSYA*
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Synonyms
Publications