NO03G00650, NO03G00650 (gene) Nannochloropsis oceanica

Overview
NameNO03G00650
Unique NameNO03G00650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2359
Alignment locationchr3:211256..213614 +

Link to JBrowse

Properties
Property NameValue
DescriptionDnaj heat shock n-terminal domain-containing
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:211256..213614 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR036671Znf_DHP_sf
IPR007872Znf_DHP
IPR001623DnaJ_domain
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
BLAST of NO03G00650 vs. NCBI_GenBank
Match: XP_003059892.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH55844.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 88.2 bits (217), Expect = 2.600e-14
Identity = 62/158 (39.24%), Postives = 83/158 (52.53%), Query Frame = 0
Query:    6 STTSFYEILGV-SPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRKDEVEGRAGRGIVVPCDGCSLRIRV 163
            S+ + YE+LGV +  AS   IKRAY+ AALA+HPDK    +        G   D+      FL VQAAW+ L+   +R AYD +L    R +     V+DE  +D+MD EG    +       CRCGD + V  DE+   +   I VPC  CSL +RV
Sbjct:    3 SSRTHYEVLGVDARDASTEDIKRAYKAAALASHPDKRASRVD-------GAAGDN----SEFLKVQAAWEILKESASRAAYDARLLETARRD-ADVVVSDEFDIDDMDAEGSSPTK---FTRRCRCGDAYEVWSDELLA-SFDAIDVPCASCSLHVRV 144          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: KQL24813.1 (hypothetical protein SETIT_031296mg [Setaria italica])

HSP 1 Score: 87.8 bits (216), Expect = 3.400e-14
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRK-------------DEVEGRA----GRGIVVPCDGCSLRIRV 163
            + YE+L VS  A+   I+ AY+ AAL THPDK    L+      + + S  L     FL VQ AW+ LRHP +R  YD+QLQ  ++  +    +A E+++ +M  E     +   L+YPCRCGD F +                EVE +A       +V+ C  CSL++R+
Sbjct:    9 TLYEVLSVSEDATYGEIRAAYKSAALNTHPDKGHTTLE------SSVPSSEL---QEFLSVQRAWEILRHPASRADYDKQLQSSRQNIE---IIASEIEIRDMIVE--STADTVELLYPCRCGDYFSITSCELGDMGILVSGDGEVEQQASDSSSASVVLGCGSCSLKVRL 165          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: XP_008613393.1 (hypothetical protein SDRG_09252 [Saprolegnia diclina VS20] >EQC33270.1 hypothetical protein SDRG_09252 [Saprolegnia diclina VS20])

HSP 1 Score: 87.8 bits (216), Expect = 3.400e-14
Identity = 61/156 (39.10%), Postives = 81/156 (51.92%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEM--DEEGGEHGEGGWLVYPCRCGDGFRVRKDEVEGRAGRGIVVPCDGCSLRIRV 163
            S Y++ GV+   S A IK+AY  A L +HPDK +             D  SL     F  V AA+ TLR   TR AYD  LQ  +  ++    ++DEV +D+M  DEE G +       + CRCG+ + +  DE+E       VVPCDGCSL IRV
Sbjct:    3 SHYDLFGVAADCSQAEIKQAYHAAILMSHPDKQK----------AAEDVSSL----DFQQVHAAYQTLRSAETRRAYDLSLQEAKLRDEKR--ISDEVDLDDMTFDEESGCY------AHACRCGEHYFISIDELEDGTD---VVPCDGCSLNIRV 133          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: PAN12783.1 (hypothetical protein PAHAL_B03091 [Panicum hallii] >PUZ71020.1 hypothetical protein GQ55_2G281100 [Panicum hallii var. hallii])

HSP 1 Score: 87.8 bits (216), Expect = 3.400e-14
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVR-----------------KDEVEGRAGRGIVVPCDGCSLRIRV 163
            + YE+L VS  A+   I+ AY+ AAL THPDK    L+    +P+    +       FL VQ AW+ LRHP +R  YD+QLQ  ++  +    +A E++V +M  E     +   L+YPCRCGD F +                  + +    A   +V+ C  CSL++R+
Sbjct:   12 TLYEVLSVSEDATYDEIRAAYKSAALNTHPDKAHTTLE--SSVPSSEQQE-------FLSVQKAWEILRHPASRADYDKQLQSSRQNIE---IIASEIEVRDMIIE--STADTVELLYPCRCGDYFSITSCELGEMGISVSGDGEVEQQASDSASASVVLGCGSCSLKVRL 168          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: XP_004957032.2 (uncharacterized protein LOC101767660 [Setaria italica])

HSP 1 Score: 87.8 bits (216), Expect = 3.400e-14
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRK-------------DEVEGRA----GRGIVVPCDGCSLRIRV 163
            + YE+L VS  A+   I+ AY+ AAL THPDK    L+      + + S  L     FL VQ AW+ LRHP +R  YD+QLQ  ++  +    +A E+++ +M  E     +   L+YPCRCGD F +                EVE +A       +V+ C  CSL++R+
Sbjct:  234 TLYEVLSVSEDATYGEIRAAYKSAALNTHPDKGHTTLE------SSVPSSEL---QEFLSVQRAWEILRHPASRADYDKQLQSSRQNIE---IIASEIEIRDMIVE--STADTVELLYPCRCGDYFSITSCELGDMGILVSGDGEVEQQASDSSSASVVLGCGSCSLKVRL 390          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: XP_002895751.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54715.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 86.7 bits (213), Expect = 7.600e-14
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQ---REEQGGGFVADEVKVDEMDEE--GGEHGEGGWLVYP--CRCGDGFRVRKDEVEGRAGRGIVVPCDGCSLRIRV 163
            SFY++LGV  S+S   ++RAY QAA   HPDK    +          D D       FL VQ A++TL +   R  YD ++Q+ +   + EQ    V+DE+ + +M  E   GE G+   ++Y   CRCGD + + +DE++       VVPC GCSL IRV
Sbjct:    5 SFYDVLGVQASSSAEDVRRAYHQAARKYHPDKRSNDVNAYNT----HDEDE----QQFLRVQEAYETLGNEDLRRDYDTKMQQDELVRKREQEIVVVSDEIPLVDMQREILKGEDGDEDEVIYTHHCRCGDLYEITQDELQDGVD---VVPCTGCSLHIRV 154          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: XP_002466012.2 (DPH4 homolog [Sorghum bicolor] >KXG40388.1 hypothetical protein SORBI_3001G537900 [Sorghum bicolor])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRK-------------DEVE----GRAGRGIVVPCDGCSLRIRV 163
            + YE+  VS  A+   I+ AY+ AAL THPDK +  L+    +P+    +       F  VQ AW+ LRHP +R  YD+QLQ  ++  +    +A E+KV +M  E     +   L+YPCRCGD F +                EVE      A   +V+ C  CSL+IR+
Sbjct:   12 TLYEVFSVSEDATYDEIRAAYRSAALNTHPDKAQTTLE--SSVPSSEQQE-------FCSVQKAWEILRHPASRADYDKQLQSSRQNIE---IIASEIKVGDMIIE--STADTVELLYPCRCGDYFFITSCQLSEMGIFVSGDGEVELQASDSASASVVLGCGSCSLKIRL 168          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: XP_020580896.1 (DPH4 homolog [Phalaenopsis equestris] >XP_020580897.1 DPH4 homolog [Phalaenopsis equestris])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 0
Query:    6 STTSFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRKDEVE------GRAGRGIVVPCDGCSLRIRV 163
            S  + Y+IL V+  AS   I+  Y+ A L +HPDK      PI P     +         FL+VQ AW+ L  P +R  YD  LQ  + E +    V +E+K+ EM  +    G+G  L Y CRCGD F +   E++        +G  +++PCD CSL+I V
Sbjct:    8 SLRTHYDILSVNEDASYDQIRENYKIAVLRSHPDKLCASPVPIHPTKNRQE--------IFLNVQKAWEVLSDPKSRQDYDDLLQASRNEAE---VVDNEIKLGEMVVQ--VDGDGKELSYQCRCGDHFFISSVELQELGFSVKTSGASVILPCDSCSLKISV 157          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: XP_012197830.1 (hypothetical protein SPRG_03843 [Saprolegnia parasitica CBS 223.65] >KDO31225.1 hypothetical protein SPRG_03843 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 85.5 bits (210), Expect = 1.700e-13
Identity = 60/156 (38.46%), Postives = 80/156 (51.28%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEM--DEEGGEHGEGGWLVYPCRCGDGFRVRKDEVEGRAGRGIVVPCDGCSLRIRV 163
            S Y++LGV+   S   IK+AY  A L +HPDK +             D  SL     F  V AA+  LR   TR AYD  LQ  +  ++    ++DEV +D+M  DEE G +       + CRCG+ + +  DE+E       VVPCDGCSL IRV
Sbjct:    3 SHYDLLGVATDCSQDEIKQAYHAAILMSHPDKQK----------AADDVSSL----DFQQVHAAYQALRSAETRRAYDLSLQEAKLRDEKR--ISDEVDLDDMTFDEESGCY------AHACRCGEHYYISVDELEDGTD---VVPCDGCSLNIRV 133          
BLAST of NO03G00650 vs. NCBI_GenBank
Match: ETL94310.1 (hypothetical protein L917_07678 [Phytophthora parasitica] >ETP45632.1 hypothetical protein F442_07971 [Phytophthora parasitica P10297])

HSP 1 Score: 84.7 bits (208), Expect = 2.900e-13
Identity = 62/161 (38.51%), Postives = 83/161 (51.55%), Query Frame = 0
Query:    9 SFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQ---REEQGGGFVADEVKVDEMDEE--GGEHGEGGWLVY--PCRCGDGFRVRKDEVEGRAGRGIVVPCDGCSLRIRV 163
            SFY++LGV+   S   I+RAY QAA   HPDK    L  +    T            FL VQ A++TL +   R  YD +LQ+ +   + EQ    V+D V VD+M  E   GE G    ++Y   CRCGD + + + E++       VVPC GCSL IRV
Sbjct:    5 SFYDVLGVAACCSAEDIRRAYHQAARKYHPDKR---LNDVNASNTNEQ--------QFLRVQEAYETLGNEELRREYDAKLQQDELVRKREQEVVVVSDVVLVDDMQREVLPGEDGGEDEVIYTHQCRCGDLYEITEGELQDGVD---VVPCTGCSLHIRV 151          
The following BLAST results are available for this feature:
BLAST of NO03G00650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_003059892.12.600e-1439.24predicted protein [Micromonas pusilla CCMP1545] >E... [more]
KQL24813.13.400e-1434.50hypothetical protein SETIT_031296mg [Setaria itali... [more]
XP_008613393.13.400e-1439.10hypothetical protein SDRG_09252 [Saprolegnia dicli... [more]
PAN12783.13.400e-1432.75hypothetical protein PAHAL_B03091 [Panicum hallii]... [more]
XP_004957032.23.400e-1434.50uncharacterized protein LOC101767660 [Setaria ital... [more]
XP_002895751.17.600e-1437.27conserved hypothetical protein [Phytophthora infes... [more]
XP_002466012.21.300e-1334.50DPH4 homolog [Sorghum bicolor] >KXG40388.1 hypothe... [more]
XP_020580896.11.300e-1334.97DPH4 homolog [Phalaenopsis equestris] >XP_02058089... [more]
XP_012197830.11.700e-1338.46hypothetical protein SPRG_03843 [Saprolegnia paras... [more]
ETL94310.12.900e-1338.51hypothetical protein L917_07678 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR051ngnoR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005887NSK005887Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00650.1NO03G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|772gene_1243Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100802g2gene632Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00650.1NO03G00650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00650 ID=NO03G00650|Name=NO03G00650|organism=Nannochloropsis oceanica|type=gene|length=2359bp
ATTGAGTGTGTGAGGTTTTCATATGTACGTAGAAGGATGAGACTCGGATC
AATTGTAGAATACAATGCCATGGAACGATTTCTGTTGTAGTATCTCTGTG
CTTGCACGTTAATAAGGAGGCAGGGCTTGCCCCGTCTCTCAACAGTGCCA
AGAAGACGAGACAATTCAGTGTGTCCGCTAGTGACTGCCACCTTGTCACG
CCCTCGTCCTTGATTGGTTTTCAGCCCACCATGAAAAACAGGGAGCGCAC
ATGTCCTGATTTGATAGAGAGACGGACAGGCCTGAGGTGGCACACAATCC
TTCGCCGTCGTTACGAACTTCTTGTGACCGTTGCCCCACCCTCTGCGCAC
TTCCTTACCCCCATTGCTCCTCCACCCAAAGGTAACCTCCATCAGACAAT
CGTCTCCAAGTCCTGCGCTGATGCGGGGATAAAATGACCAGAATGGAACT
CTCACGGCCACACGCAGTAGCTTCTCCTCTTAAACCTCCCCACCCCGAAA
ACATCCAGTCACCCTAGCTACCCACACACAGTACATGCAGCATGACCACT
CGACCATCGACTACTTCGTTTTACGAAATCCTAGGTGTCTCACCTTCGGC
CTCCCCCGCCACCATTAAACGCGCCTACCAACAAGCGGCGCTTGCCACCC
ACCCTGACAAAACTCGCCCGGTCCTACAGCCCATCAGACCTATTCCGACG
GGCATGGACAGTGACTCGCTCCCTACCTAgtaagcataagctctacgaaa
actacagtgcctcctttataccgcaaccgtgttactggtcattgcatttc
ctaagctcaatcccatcccatttgtttcctccctttcttagTCCCTCGTT
TCTTGACGTGCAAGCTGCCTGGGACACGCTTCGGCACCCCACCACCCGCG
ACGCCTACGACCAACAGCTCCAACGGCAACAGCGGGAAGAGCAGGGAGGG
GGTTTCGTCGCGGATGAAGTGAAAGTGGACGAGATGGACGAGGAAGGGGG
GGAGCACGGGGAGGGTGGGTGGTTGGTGTACCCATGCCGATGCGGGGACG
GTTTCCGAGTGAGGAAGGATGAGGTGGAGGGAAGGGCAGGGAGGGGCATA
GTGGTGCCTTGTGATGGATGCTCGCTACGGATACGTGTACATAGATAGCG
AGTAGAGAGAGGGAGGAAGAGAGGAACAGAAGAAAAGGGATAGCTGTATT
TGTAGTGTCTTCATTTACGTGTAAAAAGCAGAAGAAAAAAACATGTGACT
TGACGATCGGACACAGACAAGCCCATAGCTCATCTCTTAATCTCGCTTCG
AATGAATATGTTTATGGACAGTGCCTATTATCTTCTTGCGCCTCTCTTCC
CGTTCCTCCCATCCTCCCTCCCACATTCCCTCCCACCCCCTCCCTTCTTT
TTTTCCTTCTCCCTTGCCTGCTCTCTCTTCATACGTTCCCTCTATCTCCG
CCCTCCCTCCTTCCCTTTCCCCTTTCTATCTTTCTGTTCTCTTTAAGTGT
TCTTCTCCTCCGCTGTTCCATCTACGTATCTCTGTAGATCACGTGGCACT
ACTACTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTTCTTCTTCACCTTCT
CCTTCTCCTTCTTGTTCTTCTCCTTCTTGTTCTTCTTCCTCCTCCTTCAT
CTTCATCTCCTCCTTCTTGTTCTCTTCTTTCCTTGTCTCTGACTGGCCTT
CTGCGCGCTATCTATATACACGACTCACTAGCTTTTCCCCCCTCTCCCTC
TAACTCTCCCTCTTTCTTTGTCATCCGCACATTCTCTCGATCCCTTCTCC
CGTTCCGTCACCTAATCACTCTATCTTCCATCTTTTCGCTTCATTATAAA
CAGCTTCATTCACTCCCTTCATCCCTCCCTCTCTCCCTCCTTCCCACCGC
TTCAACGTCTTCCTCTCTTTTCTCTCCCTCCCTCCGCATTGGTCCGTCCC
TCTTCCTCATCCCTCCAATACTCCTGCAATATCTTTCTTCCGCCCCCGTG
CCGTCCGCCGTAAGGGCCTGTTCCCACTTTCCTCCATCCCACCCTCCCCT
TCCTCCCCCCCCACCTCCTTCTCGACTGCCGCCCCTCCTCGCCCTCGCTT
CCCACGGGTGCAGCTGCTGTTGCTGCTGCTGGTACTGTTGCTGGTGTTGT
TGCTGCTTGTGATGGTCGTCATCGTCGTCGATGAAGTCGTGCTGGTGCTA
GTAGCCGCACTTCTTCTCGTCTGGCGCTTCCTCCCTTTCTCGGTCACCCT
CCCCTCCCT
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protein sequence of NO03G00650.1

>NO03G00650.1-protein ID=NO03G00650.1-protein|Name=NO03G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MTTRPSTTSFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRP
IPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGG
FVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRKDEVEGRAGRGIV
VPCDGCSLRIRVHR*
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Synonyms
Publications