NO03G00650.1, NO03G00650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00650.1
Unique NameNO03G00650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2247
Alignment locationchr3:211256..213614 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:211256..213614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00650.1 vs.
Match: EWM30015.1 (dnaj heat shock n-terminal domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 5.800e-30
Identity = 91/188 (48.40%), Postives = 112/188 (59.57%), Query Frame = 0 
Query:    7 TTSFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQP-IRPIPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGGFVADEVKVDEMDEEGGEH-GEGGWLVYPCRCGDGFRVRKDE-------------VEG--------RAGRG---------IVVPCDGCSLRIRV 163
            T S Y+ILGVSP+ASP+TIKRAYQ AA ATHPDK     +   R  P  + S       +FL++QAAWD LR   +R AYD    R +R+E+  GF+A+EV+V EM+EEGGE  G+  WL+YPCRCGD FRV K+E              EG        R+G G         +VV CDGCSLRIRV
Sbjct:    6 TLSLYDILGVSPAASPSTIKRAYQSAARATHPDKAAAHSKGGCRARPGHVSSPRF----TFLEIQAAWDVLRARESRAAYDAAWGR-KRDEEVEGFIAEEVRVAEMEEEGGEEDGKERWLLYPCRCGDAFRVPKEEGRFLVGGTGSRETEEGGTEKVKMDRSGGGGGGQDGGAAVVVTCDGCSLRIRV 188
The following BLAST results are available for this feature:
BLAST of NO03G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30015.15.800e-3048.40dnaj heat shock n-terminal domain-containing [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00650NO03G00650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00650.1NO03G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00650.1.cds1NO03G00650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00650.1.cds2NO03G00650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00650.1 ID=NO03G00650.1|Name=NO03G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
ATTGAGTGTGTGAGGTTTTCATATGTACGTAGAAGGATGAGACTCGGATC
AATTGTAGAATACAATGCCATGGAACGATTTCTGTTGTAGTATCTCTGTG
CTTGCACGTTAATAAGGAGGCAGGGCTTGCCCCGTCTCTCAACAGTGCCA
AGAAGACGAGACAATTCAGTGTGTCCGCTAGTGACTGCCACCTTGTCACG
CCCTCGTCCTTGATTGGTTTTCAGCCCACCATGAAAAACAGGGAGCGCAC
ATGTCCTGATTTGATAGAGAGACGGACAGGCCTGAGGTGGCACACAATCC
TTCGCCGTCGTTACGAACTTCTTGTGACCGTTGCCCCACCCTCTGCGCAC
TTCCTTACCCCCATTGCTCCTCCACCCAAAGGTAACCTCCATCAGACAAT
CGTCTCCAAGTCCTGCGCTGATGCGGGGATAAAATGACCAGAATGGAACT
CTCACGGCCACACGCAGTAGCTTCTCCTCTTAAACCTCCCCACCCCGAAA
ACATCCAGTCACCCTAGCTACCCACACACAGTACATGCAGCATGACCACT
CGACCATCGACTACTTCGTTTTACGAAATCCTAGGTGTCTCACCTTCGGC
CTCCCCCGCCACCATTAAACGCGCCTACCAACAAGCGGCGCTTGCCACCC
ACCCTGACAAAACTCGCCCGGTCCTACAGCCCATCAGACCTATTCCGACG
GGCATGGACAGTGACTCGCTCCCTACCTATCCCTCGTTTCTTGACGTGCA
AGCTGCCTGGGACACGCTTCGGCACCCCACCACCCGCGACGCCTACGACC
AACAGCTCCAACGGCAACAGCGGGAAGAGCAGGGAGGGGGTTTCGTCGCG
GATGAAGTGAAAGTGGACGAGATGGACGAGGAAGGGGGGGAGCACGGGGA
GGGTGGGTGGTTGGTGTACCCATGCCGATGCGGGGACGGTTTCCGAGTGA
GGAAGGATGAGGTGGAGGGAAGGGCAGGGAGGGGCATAGTGGTGCCTTGT
GATGGATGCTCGCTACGGATACGTGTACATAGATAGCGAGTAGAGAGAGG
GAGGAAGAGAGGAACAGAAGAAAAGGGATAGCTGTATTTGTAGTGTCTTC
ATTTACGTGTAAAAAGCAGAAGAAAAAAACATGTGACTTGACGATCGGAC
ACAGACAAGCCCATAGCTCATCTCTTAATCTCGCTTCGAATGAATATGTT
TATGGACAGTGCCTATTATCTTCTTGCGCCTCTCTTCCCGTTCCTCCCAT
CCTCCCTCCCACATTCCCTCCCACCCCCTCCCTTCTTTTTTTCCTTCTCC
CTTGCCTGCTCTCTCTTCATACGTTCCCTCTATCTCCGCCCTCCCTCCTT
CCCTTTCCCCTTTCTATCTTTCTGTTCTCTTTAAGTGTTCTTCTCCTCCG
CTGTTCCATCTACGTATCTCTGTAGATCACGTGGCACTACTACTACTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTCCTCCTCCTTCTTCTTCACCTTCTCCTTCTCCTTCT
TGTTCTTCTCCTTCTTGTTCTTCTTCCTCCTCCTTCATCTTCATCTCCTC
CTTCTTGTTCTCTTCTTTCCTTGTCTCTGACTGGCCTTCTGCGCGCTATC
TATATACACGACTCACTAGCTTTTCCCCCCTCTCCCTCTAACTCTCCCTC
TTTCTTTGTCATCCGCACATTCTCTCGATCCCTTCTCCCGTTCCGTCACC
TAATCACTCTATCTTCCATCTTTTCGCTTCATTATAAACAGCTTCATTCA
CTCCCTTCATCCCTCCCTCTCTCCCTCCTTCCCACCGCTTCAACGTCTTC
CTCTCTTTTCTCTCCCTCCCTCCGCATTGGTCCGTCCCTCTTCCTCATCC
CTCCAATACTCCTGCAATATCTTTCTTCCGCCCCCGTGCCGTCCGCCGTA
AGGGCCTGTTCCCACTTTCCTCCATCCCACCCTCCCCTTCCTCCCCCCCC
ACCTCCTTCTCGACTGCCGCCCCTCCTCGCCCTCGCTTCCCACGGGTGCA
GCTGCTGTTGCTGCTGCTGGTACTGTTGCTGGTGTTGTTGCTGCTTGTGA
TGGTCGTCATCGTCGTCGATGAAGTCGTGCTGGTGCTAGTAGCCGCACTT
CTTCTCGTCTGGCGCTTCCTCCCTTTCTCGGTCACCCTCCCCTCCCT
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protein sequence of NO03G00650.1

>NO03G00650.1-protein ID=NO03G00650.1-protein|Name=NO03G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MTTRPSTTSFYEILGVSPSASPATIKRAYQQAALATHPDKTRPVLQPIRP
IPTGMDSDSLPTYPSFLDVQAAWDTLRHPTTRDAYDQQLQRQQREEQGGG
FVADEVKVDEMDEEGGEHGEGGWLVYPCRCGDGFRVRKDEVEGRAGRGIV
VPCDGCSLRIRVHR*
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mRNA from alignment at chr3:211256..213614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00650.1 ID=NO03G00650.1|Name=NO03G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2359bp|location=Sequence derived from alignment at chr3:211256..213614+ (Nannochloropsis oceanica)
ATTGAGTGTGTGAGGTTTTCATATGTACGTAGAAGGATGAGACTCGGATC
AATTGTAGAATACAATGCCATGGAACGATTTCTGTTGTAGTATCTCTGTG
CTTGCACGTTAATAAGGAGGCAGGGCTTGCCCCGTCTCTCAACAGTGCCA
AGAAGACGAGACAATTCAGTGTGTCCGCTAGTGACTGCCACCTTGTCACG
CCCTCGTCCTTGATTGGTTTTCAGCCCACCATGAAAAACAGGGAGCGCAC
ATGTCCTGATTTGATAGAGAGACGGACAGGCCTGAGGTGGCACACAATCC
TTCGCCGTCGTTACGAACTTCTTGTGACCGTTGCCCCACCCTCTGCGCAC
TTCCTTACCCCCATTGCTCCTCCACCCAAAGGTAACCTCCATCAGACAAT
CGTCTCCAAGTCCTGCGCTGATGCGGGGATAAAATGACCAGAATGGAACT
CTCACGGCCACACGCAGTAGCTTCTCCTCTTAAACCTCCCCACCCCGAAA
ACATCCAGTCACCCTAGCTACCCACACACAGTACATGCAGCATGACCACT
CGACCATCGACTACTTCGTTTTACGAAATCCTAGGTGTCTCACCTTCGGC
CTCCCCCGCCACCATTAAACGCGCCTACCAACAAGCGGCGCTTGCCACCC
ACCCTGACAAAACTCGCCCGGTCCTACAGCCCATCAGACCTATTCCGACG
GGCATGGACAGTGACTCGCTCCCTACCTAGTAAGCATAAGCTCTACGAAA
ACTACAGTGCCTCCTTTATACCGCAACCGTGTTACTGGTCATTGCATTTC
CTAAGCTCAATCCCATCCCATTTGTTTCCTCCCTTTCTTAGTCCCTCGTT
TCTTGACGTGCAAGCTGCCTGGGACACGCTTCGGCACCCCACCACCCGCG
ACGCCTACGACCAACAGCTCCAACGGCAACAGCGGGAAGAGCAGGGAGGG
GGTTTCGTCGCGGATGAAGTGAAAGTGGACGAGATGGACGAGGAAGGGGG
GGAGCACGGGGAGGGTGGGTGGTTGGTGTACCCATGCCGATGCGGGGACG
GTTTCCGAGTGAGGAAGGATGAGGTGGAGGGAAGGGCAGGGAGGGGCATA
GTGGTGCCTTGTGATGGATGCTCGCTACGGATACGTGTACATAGATAGCG
AGTAGAGAGAGGGAGGAAGAGAGGAACAGAAGAAAAGGGATAGCTGTATT
TGTAGTGTCTTCATTTACGTGTAAAAAGCAGAAGAAAAAAACATGTGACT
TGACGATCGGACACAGACAAGCCCATAGCTCATCTCTTAATCTCGCTTCG
AATGAATATGTTTATGGACAGTGCCTATTATCTTCTTGCGCCTCTCTTCC
CGTTCCTCCCATCCTCCCTCCCACATTCCCTCCCACCCCCTCCCTTCTTT
TTTTCCTTCTCCCTTGCCTGCTCTCTCTTCATACGTTCCCTCTATCTCCG
CCCTCCCTCCTTCCCTTTCCCCTTTCTATCTTTCTGTTCTCTTTAAGTGT
TCTTCTCCTCCGCTGTTCCATCTACGTATCTCTGTAGATCACGTGGCACT
ACTACTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTTCTTCTTCACCTTCT
CCTTCTCCTTCTTGTTCTTCTCCTTCTTGTTCTTCTTCCTCCTCCTTCAT
CTTCATCTCCTCCTTCTTGTTCTCTTCTTTCCTTGTCTCTGACTGGCCTT
CTGCGCGCTATCTATATACACGACTCACTAGCTTTTCCCCCCTCTCCCTC
TAACTCTCCCTCTTTCTTTGTCATCCGCACATTCTCTCGATCCCTTCTCC
CGTTCCGTCACCTAATCACTCTATCTTCCATCTTTTCGCTTCATTATAAA
CAGCTTCATTCACTCCCTTCATCCCTCCCTCTCTCCCTCCTTCCCACCGC
TTCAACGTCTTCCTCTCTTTTCTCTCCCTCCCTCCGCATTGGTCCGTCCC
TCTTCCTCATCCCTCCAATACTCCTGCAATATCTTTCTTCCGCCCCCGTG
CCGTCCGCCGTAAGGGCCTGTTCCCACTTTCCTCCATCCCACCCTCCCCT
TCCTCCCCCCCCACCTCCTTCTCGACTGCCGCCCCTCCTCGCCCTCGCTT
CCCACGGGTGCAGCTGCTGTTGCTGCTGCTGGTACTGTTGCTGGTGTTGT
TGCTGCTTGTGATGGTCGTCATCGTCGTCGATGAAGTCGTGCTGGTGCTA
GTAGCCGCACTTCTTCTCGTCTGGCGCTTCCTCCCTTTCTCGGTCACCCT
CCCCTCCCT
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Coding sequence (CDS) from alignment at chr3:211256..213614+

>NO03G00650.1 ID=NO03G00650.1|Name=NO03G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at chr3:211256..213614+ (Nannochloropsis oceanica)
ATGACCACTCGACCATCGACTACTTCGTTTTACGAAATCCTAGGTGTCTC
ACCTTCGGCCTCCCCCGCCACCATTAAACGCGCCTACCAACAAGCGGCGC
TTGCCACCCACCCTGACAAAACTCGCCCGGTCCTACAGCCCATCAGACCT
ATTCCGACGGGCATGGACAGTGACTCGCTCCCTACCTATCCCTCGTTTCT
TGACGTGCAAGCTGCCTGGGACACGCTTCGGCACCCCACCACCCGCGACG
CCTACGACCAACAGCTCCAACGGCAACAGCGGGAAGAGCAGGGAGGGGGT
TTCGTCGCGGATGAAGTGAAAGTGGACGAGATGGACGAGGAAGGGGGGGA
GCACGGGGAGGGTGGGTGGTTGGTGTACCCATGCCGATGCGGGGACGGTT
TCCGAGTGAGGAAGGATGAGGTGGAGGGAAGGGCAGGGAGGGGCATAGTG
GTGCCTTGTGATGGATGCTCGCTACGGATACGTGTACATAGATAG
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Synonyms
Publications