NO03G00610, NO03G00610 (gene) Nannochloropsis oceanica

Overview
NameNO03G00610
Unique NameNO03G00610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr3:196491..197447 +

Link to JBrowse

Properties
Property NameValue
DescriptionKu P80 DNA helicase, putative
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:196491..197447 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0043564Ku70:Ku80 complex
GO:0043564Ku70:Ku80 complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0042162telomeric DNA binding
GO:0003684damaged DNA binding
GO:0003677DNA binding
GO:0042162telomeric DNA binding
GO:0004386helicase activity
GO:0003684damaged DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000723telomere maintenance
GO:0006310DNA recombination
GO:0006303double-strand break repair via nonhomologous end joining
GO:0006310DNA recombination
GO:0006303double-strand break repair via nonhomologous end joining
GO:0000723telomere maintenance
Vocabulary: INTERPRO
TermDefinition
IPR016194SPOC-like_C_dom
IPR024193Ku80
IPR006164Ku70/Ku80_beta-barrel_dom
Homology
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BLAST of NO03G00610 vs. NCBI_GenBank
Match: CBJ26499.1 (ku P80 DNA helicase, putative [Ectocarpus siliculosus])

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-9
Identity = 41/128 (32.03%), Postives = 68/128 (53.12%), Query Frame = 0 
Query:   13 EPEGGRAASLLLVLGEALREGRKVALVRYVKREGGDPEVGLLTPPSVWANPREGIGWWGREGEGWPPFLVYNKLPFQEDLRSYGFRSLSDPQGRHFPTEEEREAGLAVVDALTF--APRRREGGGRGG 139
            EP  G+AA  +  L  A+R   +VA+ R+V+R+ G+P +G+L P S    P E               L++ K+PF ED+R++ F SL+ P     P++E++    ++V+A+         +GG RGG
Sbjct:  329 EPGSGQAAGAISSLSSAMRNLDQVAVARFVRRKSGEPWLGILIPDSTGVVPTER--------------LLFQKIPFIEDVRAFNFPSLAKPPPSRTPSDEQKRVSASLVEAMMIPELDGNMQGGVRGG 442
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BLAST of NO03G00610 vs. NCBI_GenBank
Match: XP_004345889.1 (ATPdependent DNA helicase [Acanthamoeba castellanii str. Neff] >ELR21345.1 ATPdependent DNA helicase [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 67.8 bits (164), Expect = 4.200e-8
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 0 
Query:   13 EPEGGRAASLLLVLGEALREGRKVALVRYVKREGGDPEVGLLTPPSVWANPREGIGWWGREGEGWPPF--LVYNKLPFQEDLRSYGFRSLSDPQGRHF-PTEEEREAGLAVVDAL-TFAPRRREGGGRGGGMALRLAPHPWTRAVYRAALEK 161
            EP  G AA+ L  L  AL E   +A+VRYVKR  G+P +G L+P                     P F  L +  LPF EDLR Y F SL+ P  + + P+EE+ EA  A++D++        E G     +  +   +P  + +YRA L +
Sbjct:  380 EPGDGSAAAALSALAHALAETGSLAIVRYVKRNKGNPYLGCLSPHIK------------------PDFACLYFCALPFAEDLRQYPFASLARPLRKAYAPSEEQLEATQALIDSMDLMTAATDEDGNPMEAVKPKYTYNPALQNLYRAVLHR 513
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BLAST of NO03G00610 vs. NCBI_GenBank
Match: XP_022147110.1 (ATP-dependent DNA helicase 2 subunit KU80 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 6.000e-7
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 0 
Query:   13 EPEGGRAASLLLVLGEALREGRKVALVRYVKREG-GDPEVGLLTPPSVWANPREGIGWWGREGEGWPPFLVYNKLPFQEDLRSYGFRSLSDPQGRHFPTEEEREAGLAVVDALTFAPRRRE 133
            EP   RA   +  L  A++E  KVA+VR V R+G G   VG+LTP                E +G    L +N LPF ED+R + F S S+      P+EE++EA   +V  L  AP  RE
Sbjct:  341 EPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNI-------------SEKDGIADSLYFNVLPFAEDVREFQFSSFSNFPASMQPSEEQQEAADDLVKMLDLAPSGRE 448
The following BLAST results are available for this feature:
BLAST of NO03G00610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
CBJ26499.11.700e-932.03ku P80 DNA helicase, putative [Ectocarpus siliculo... [more]
XP_004345889.14.200e-833.55ATPdependent DNA helicase [Acanthamoeba castellani... [more]
XP_022147110.16.000e-737.19ATP-dependent DNA helicase 2 subunit KU80 [Momordi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00610.1NO03G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00610.1NO03G00610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00610 ID=NO03G00610|Name=NO03G00610|organism=Nannochloropsis oceanica|type=gene|length=957bp
ATGGGGATTGCGTCGGCGGTGAAACCACACAAAGACGAACCGGAGGGGGG
GAGGGCAGCCTCCCTCCTTCTAGTGCTGGGGGAAGCTTTGAGGGAGGGGA
GGAAGGTGGCGCTCGTGCGCTATGTGAAGAGGGAGGGAGGGGATCCCGAG
GTCGGCCTGTTGACACCCCCGAGTGTGTGGGCGAATCCCAGGGAGGGCAT
AGGGTGGTGGGGGAGGGAGGGAGAGGGATGGCCGCCTTTTTTGGTGTATA
ATAAGTTGCCGTTTCAGGAGGACTTACGGTCGTATGGATTTCGGAGTTTG
AGTGATCCGCAGGGGAGGCACTTTCCGACGGAGGAAGAGAGGGAGGCGGG
TCTGGCGGTGGTGGATGCTCTGACCTTTGCCCCGAGGAGGAGGGAGGGAG
GGGGGAGGGGGGGAGGGATGGCGTTGAGGCTGGCCCCGCATCCGTGGACG
AGGGCGGTGTATAGGGCGGCATTAGAGAAAGGTTTGAGTATGGAGGAGGG
AGGGGAGGAGGAGGAGGAGGGAGGGGGGAGGGAGAGAGGGAGGGAGGGAG
GGAGGAGCGGAAGCCCGTGAAGTTGCTGTCGTCGTCCTTGGGAGGGGCGA
CGGGACTGCCCCCCGAGATGGAGCGGGAAGAGGGGATGTGGATGGAGGCC
ACGgtgagggagggagggagggaagaagggagggagggagggggggggag
cgtggatttcagccaatgatttcgcatttaccgtttcgactcgtttggat
ttaccttttcctccctccttccctccctccttcccttcctccctccctcc
ctccctcgtccagACAGCGTTAGCGAAGTTTGCGGAGCGCCTTCCATTGG
AAAAGGTGGAAAAAAAGGCACCGCGGGAGACGCGGTCTTGGCAGGAAATG
CTGGGGGCCGTCGGGGAGGGAGGAGGGGGAGAAGGAGGAGGAGGGGAGGA
GGGGGGG
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protein sequence of NO03G00610.1

>NO03G00610.1-protein ID=NO03G00610.1-protein|Name=NO03G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MGIASAVKPHKDEPEGGRAASLLLVLGEALREGRKVALVRYVKREGGDPE
VGLLTPPSVWANPREGIGWWGREGEGWPPFLVYNKLPFQEDLRSYGFRSL
SDPQGRHFPTEEEREAGLAVVDALTFAPRRREGGGRGGGMALRLAPHPWT
RAVYRAALEKGLSMEEGGEEEEEGGGRERGREGGRSGSP*
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Synonyms
Publications