NO03G00440, NO03G00440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G00440 vs. NCBI_GenBank
Match: KFH14155.1 (pentatricopeptide repeat domain-containing protein [Toxoplasma gondii MAS]) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-10 Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 0 Query: 303 PPDAWTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREEGRDVSQGVYNELLRALARGQSAGVKGGRIPKVGD 521 PP A + AL+ +V A A ++M D V T ++ LV ++ R+ FW G+EPD V +TV+I + C G+ ER ++LLD+M + PT TY L+ K +++ + ++ + + Y L+R CA GN A+ V +M E S +Y ++R A R+P+V D Sbjct: 962 PPSARVYAALIQAHVAAQDLPSAFALLRKMEDEHIPADCVVYTVLIDGLV----RAKKIRKAWRTFWTMRTWKGLEPDEVLFTVMIKA-CAVRGEAERAINLLDDMRASGLHPTDVTYAELMHACCDR----KDFASKCFHFYHQMLAEDMPITLPVYAFLLRACAAQGNVKRAKDVVRQMVRENVSFSSYMYTLVIRVFASAM-------RLPRVSD 1163
BLAST of NO03G00440 vs. NCBI_GenBank
Match: CEL73144.1 (TPA: PPR repeat-containing protein [Toxoplasma gondii VEG]) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-10 Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 0 Query: 303 PPDAWTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREEGRDVSQGVYNELLRALARGQSAGVKGGRIPKVGD 521 PP A + AL+ +V A A ++M D V T ++ LV ++ R+ FW G+EPD V +TV+I + C G+ ER ++LLD+M + PT TY L+ K +++ + ++ + + Y L+R CA GN A+ V +M E S +Y ++R A R+P+V D Sbjct: 656 PPSARVYAALIQAHVAAQDLPSAFALLRKMEDEHIPADCVVYTVLIDGLV----RAKKIRKAWRTFWTMRTWKGLEPDEVLFTVMIKA-CAVRGEAERAINLLDDMRASGLHPTDVTYAELMHACCDR----KDFASKCFHFYHQMLAEDMPITLPVYAFLLRACAAQGNVKRAKDVVRQMVRENVSFSSYMYTLVIRVFASAM-------RLPRVSD 857
BLAST of NO03G00440 vs. NCBI_GenBank
Match: KYF41032.1 (pentatricopeptide repeat domain-containing protein [Toxoplasma gondii ARI]) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-10 Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 0 Query: 303 PPDAWTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREEGRDVSQGVYNELLRALARGQSAGVKGGRIPKVGD 521 PP A + AL+ +V A A ++M D V T ++ LV ++ R+ FW G+EPD V +TV+I + C G+ ER ++LLD+M + PT TY L+ K +++ + ++ + + Y L+R CA GN A+ V +M E S +Y ++R A R+P+V D Sbjct: 959 PPSARVYAALIQAHVAAQDLPSAFALLRKMEDEHIPADCVVYTVLIDGLV----RAKKIRKAWRTFWTMRTWKGLEPDEVLFTVMIKA-CAVRGEAERAINLLDDMRASGLHPTDVTYAELMHACCDR----KDFASKCFHFYHQMLAEDMPITLPVYAFLLRACAAQGNVKRAKDVVRQMVRENISFSSYMYTLVIRVFASAM-------RLPRVSD 1160
BLAST of NO03G00440 vs. NCBI_GenBank
Match: KYK72103.1 (pentatricopeptide repeat domain-containing protein, partial [Toxoplasma gondii TgCatPRC2]) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-10 Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 0 Query: 303 PPDAWTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREEGRDVSQGVYNELLRALARGQSAGVKGGRIPKVGD 521 PP A + AL+ +V A A ++M D V T ++ LV ++ R+ FW G+EPD V +TV+I + C G+ ER ++LLD+M + PT TY L+ K +++ + ++ + + Y L+R CA GN A+ V +M E S +Y ++R A R+P+V D Sbjct: 959 PPSARVYAALIQAHVAAQDLPSAFALLRKMEDEHIPADCVVYTVLIDGLV----RAKKIRKAWRTFWTMRTWKGLEPDEVLFTVMIKA-CAVRGEAERAINLLDDMRASGLHPTDVTYAELMHACCDR----KDFASKCFHFYHQMLAEDMPITLPVYAFLLRACAAQGNVKRAKDVVRQMVRENVSFSSYMYTLVIRVFASAM-------RLPRVSD 1160
BLAST of NO03G00440 vs. NCBI_GenBank
Match: PUA87278.1 (pentatricopeptide repeat domain-containing protein [Toxoplasma gondii TgCATBr9]) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-10 Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 0 Query: 303 PPDAWTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREEGRDVSQGVYNELLRALARGQSAGVKGGRIPKVGD 521 PP A + AL+ +V A A ++M D V T ++ LV ++ R+ FW G+EPD V +TV+I + C G+ ER ++LLD+M + PT TY L+ K +++ + ++ + + Y L+R CA GN A+ V +M E S +Y ++R A R+P+V D Sbjct: 962 PPSARVYAALIQAHVAAQDLPSAFALLRKMEDEHIPADCVVYTVLIDGLV----RAKKIRKAWRTFWTMRTWKGLEPDEVLFTVMIKA-CAVRGEAERAINLLDDMRASGLHPTDVTYAELMHACCDR----KDFASKCFHFYHQMLAEDMPITLPVYAFLLRACAAQGNVKRAKDVVRQMVRENVSFSSYMYTLVIRVFASAM-------RLPRVSD 1163
BLAST of NO03G00440 vs. NCBI_GenBank
Match: XP_020101799.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Ananas comosus] >OAY68792.1 Pentatricopeptide repeat-containing protein, chloroplastic [Ananas comosus]) HSP 1 Score: 71.6 bits (174), Expect = 1.400e-8 Identity = 78/300 (26.00%), Postives = 127/300 (42.33%), Query Frame = 0 Query: 233 LLEYDRLLRAYGLQNRISDADALLQSLLHRQLPVTTRTLTAYVYACSVASPPQPEAAEEE---------MAEWEGRGLPP--------PDAWTWGALVSGYVRAGRREEALDAFKRMRL----AGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEME-QMSVTPTLHTYNTL-----LFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREEGR-DVSQGVYNELLRALAR 505 + + L+ AY ++ A+ L+Q++ R+ + CS+ + P A E + + PP PDA + L+ GY+RAGR ++ + + MRL A D+A TTV ALVG G +R VLD +M +GV + V Y VL+ C + L+ SLL +ME ++ + P + +YN L L + L F + G+ V+Y L++ A +G P LA + M ++ R V + +N L+ R Sbjct: 302 ITSFHSLVAAYVGLGDLAAAERLIQAMRERRADI-----------CSLLAQSSPTPARVEPHALLEAIVLGSHDAAAAPPPLLPATYAPDARVYTTLMKGYMRAGRVDDVVRTIRAMRLEPDPASRPDDVAY-TTVATALVGA--GAVDRARGVLD---EMARDGVPANRVTYNVLLKGYCQQL-QLDEAKSLLRDMENRLGIEPNVISYNILIDGCILIDDSAGALAF----------FNEMRERGIPPSKVSYTTLMKAFALSGQPKLAHKVFDEMSKDPRVRVDRVAWNMLIEGYCR 573
BLAST of NO03G00440 vs. NCBI_GenBank
Match: PFH36480.1 (pentatricopeptide repeat domain-containing protein [Besnoitia besnoiti]) HSP 1 Score: 71.6 bits (174), Expect = 1.400e-8 Identity = 44/170 (25.88%), Postives = 77/170 (45.29%), Query Frame = 0 Query: 303 PPDAWTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGN 473 PP + + AL+ +V AG A ++M + +A V L+ G ++ R+ FW G+EPD V +TV+I + C G+ ER ++LLD++ + PT TY+ L+ K +++ + ++ + + Y L+R CA GN Sbjct: 674 PPSSRVYAALIQAHVAAGDLVSAFALLRKM----DDEHIAADCVVHTVLIDGLVKAKKLRKAWRTFWNMRTWKGIEPDEVLFTVMIKA-CAVRGEAERAVNLLDDLRASGLHPTDVTYSELMHACCDR----KDFASKCFHFYQQMLAEDMPITPAVYAFLLRACAAQGN 834
BLAST of NO03G00440 vs. NCBI_GenBank
Match: PHJ21869.1 (pentatricopeptide repeat domain-containing protein [Cystoisospora suis]) HSP 1 Score: 69.7 bits (169), Expect = 5.400e-8 Identity = 51/212 (24.06%), Postives = 95/212 (44.81%), Query Frame = 0 Query: 309 WGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQALVGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREEGRDVSQGVYNELLRALARGQSAGVKGGRIPKVGD 521 + +L+ +V + A ++M D + T+++ L+ ++ + R FW +EPD V +T++I + LK G+ ER L+LLD++ Q + PT TY ++ K +++ +E +++ + + Y L+R C GN A+ V M E ++ +Y+ L+RA A R+P V D Sbjct: 314 YSSLIQAHVLSHDLSSAFALLRKMEDENLQPDCVIYTSLIDGLIKEKKIKKAWRL----FWNLRTWKKIEPDEVLFTIMIKACALK-GESERALNLLDDLRQSGLYPTDITYMEVIHACCDR----KDFASKCFEFYHQMKAEDMPITLPVYSFLLRACVTTGNVKRAKNIVREMIERRIPLNSYIYSLLIRAFASAM-------RLPHVND 509
BLAST of NO03G00440 vs. NCBI_GenBank
Match: AEP33766.1 (organelle transcript processing 82, partial [Lepidium virginicum]) HSP 1 Score: 68.9 bits (167), Expect = 9.200e-8 Identity = 48/175 (27.43%), Postives = 84/175 (48.00%), Query Frame = 0 Query: 299 RGLPPPDAWTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQAL--VGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAG 472 +GL DA +W L+ G+ +EAL F+ M +G + +V+ A +G + GR + ++D RL GV + T LI + K GD+E + D M + +L ++N ++F A G +N ++L ++ SG+ DD+T+ GL+ C+ +G Sbjct: 264 QGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGR-----WIHVYIDKRLKGVTNSSSLRTSLI-DMYAKCGDIEAASQVFDSM----LARSLSSWNAMIFGFA-----MHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHSG 423
BLAST of NO03G00440 vs. NCBI_GenBank
Match: EEE66861.1 (hypothetical protein OsJ_23658 [Oryza sativa Japonica Group]) HSP 1 Score: 68.9 bits (167), Expect = 9.200e-8 Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 0 Query: 307 WTWGALVSGYVRAGRREEALDAFKRMRLAGHGQDLAVCTTVMQAL--VGGREGGRERREKVLDFWMDMRLNGVEPDAVAYTVLIHSLCLKTGDLERGLSLLDEMEQMSVTPTLHTYNTLLFTAARAPLWFKGYSNLVYELLGRLEGSGLALDDVTYRGLVRVCAQAGNPLLAECYVERMREE 487 + W +V+GYV+ GR EEALD F+RM G D T+V A VG E GR+ V W + DA + ++ + K G+LE S+ D + T + + ++L + A G + EL R+ + +++T G++ C+ G E Y ++M+EE Sbjct: 314 FAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKL-------DAPLASAIV-DMYAKCGNLEDARSIFDR----ACTKNIAVWTSMLCSYAS-----HGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEE 478 The following BLAST results are available for this feature:
BLAST of NO03G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G00440 ID=NO03G00440|Name=NO03G00440|organism=Nannochloropsis oceanica|type=gene|length=4196bpback to top protein sequence of NO03G00440.1 >NO03G00440.1-protein ID=NO03G00440.1-protein|Name=NO03G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=932bpback to top Synonyms
Publications
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