NO03G00290, NO03G00290 (gene) Nannochloropsis oceanica

Overview
NameNO03G00290
Unique NameNO03G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr3:88364..89749 +

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Properties
Property NameValue
Description60S ribosomal protein L36
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:88364..89749 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
Homology
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_009829073.1 (hypothetical protein H257_05793 [Aphanomyces astaci] >ETV81215.1 hypothetical protein H257_05793 [Aphanomyces astaci])

HSP 1 Score: 139.0 bits (349), Expect = 1.200e-29
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            MSSTG   GL+KG+PV K EV  RPAA+KG   KK   VR ++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTH+RAL KREE+K YY   RA+QA
Sbjct:    1 MSSTGIATGLSKGYPVTKREVAPRPAAKKGRAGKKTLFVRAIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHKRALAKREEMKAYYASQRAKQA 104
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: OQR92584.1 (hypothetical protein ACHHYP_03493 [Achlya hypogyna])

HSP 1 Score: 139.0 bits (349), Expect = 1.200e-29
Identity = 70/104 (67.31%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            MSSTG   G+ KG+PV K EV  RPA++KG   KK + VR ++R+VVGLMPYEKRILD+IKSGGS AEK++YKF K+RLGTHRRAL KREE+K YY  LRA+QA
Sbjct:    1 MSSTGIACGVAKGYPVTKREVAPRPASKKGRAGKKTQFVRNIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFTKKRLGTHRRALHKREEMKAYYAALRAKQA 104
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_008875839.1 (hypothetical protein H310_11067 [Aphanomyces invadans] >ETV95646.1 hypothetical protein H310_11067 [Aphanomyces invadans])

HSP 1 Score: 136.7 bits (343), Expect = 5.800e-29
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            MSSTG   GL+KG+PV K E+  RPA++KG   KK   VR ++R+VVGLMPYEKRILD+IKSGGS AEK++YKF+K+RLGTH+RAL KREE+K YY   RA+QA
Sbjct:    1 MSSTGIATGLSKGYPVTKRELAPRPASKKGRAGKKTTFVRAIVREVVGLMPYEKRILDMIKSGGSSAEKRIYKFSKKRLGTHKRALAKREEMKAYYAAQRAKQA 104
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: CAQ52401.1 (60S ribosomal protein L36, partial [Laminaria digitata])

HSP 1 Score: 119.8 bits (299), Expect = 7.300e-24
Identity = 60/92 (65.22%), Postives = 75/92 (81.52%), Query Frame = 0 
Query:   56 GFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            G   +K     RP+  KG L K+VK+VREV+R+V GLMPYEKRILD+IK+GG+ AEK++YKFAKRRLGTH+RAL KRE+IK+ Y K+RARQA
Sbjct:   17 GSSTQKRAQKARPSHHKGRLGKRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 108
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_009039662.1 (hypothetical protein AURANDRAFT_30566 [Aureococcus anophagefferens] >EGB05528.1 hypothetical protein AURANDRAFT_30566 [Aureococcus anophagefferens])

HSP 1 Score: 117.9 bits (294), Expect = 2.800e-23
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = 0 
Query:   55 KGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            K F  EKL   +RP  RKG L  + K+VREV+R+V GL+PYEKRILD+IK+GG+ +EK++YKFAK RLGTH+RA+KKRE++KD Y ++RARQA
Sbjct:    2 KHFETEKLAKAQRPKHRKGRLSARTKVVREVVREVAGLVPYEKRILDMIKTGGASSEKRMYKFAKMRLGTHKRAIKKREDMKDIYAQMRARQA 94
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: CBJ30571.1 (60S ribosomal protein L36 [Ectocarpus siliculosus])

HSP 1 Score: 117.5 bits (293), Expect = 3.600e-23
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = 0 
Query:   60 EKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            EK     RP+  KG L  +VK+VREV+R+V GLMPYEKRILD+IK+GG+ AEK++YKFAKRRLGTH+RAL KRE+IK+ Y K+RARQA
Sbjct:   15 EKRARKARPSHNKGRLGNRVKMVREVVREVAGLMPYEKRILDMIKTGGASAEKRIYKFAKRRLGTHKRALAKREDIKEVYSKMRARQA 102
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_002289404.1 (RL36, ribosomal protein 36 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED92941.1 RL36, ribosomal protein 36 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 114.0 bits (284), Expect = 4.000e-22
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            M+ +G  +G NKG   E+ E   RP+  KG L K+  L RE+ R+V GL PYE+RILD+IK+GGS A+K++YKFAKRRLG+H+RAL KRE+IK    K+RA+QA
Sbjct:    1 MARSGFAKGANKGHITEQKERAARPSQSKGRLGKRTALCREIAREVAGLSPYERRILDMIKTGGSSADKRIYKFAKRRLGSHKRALAKREDIKAVNSKMRAKQA 104
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: EJK74033.1 (hypothetical protein THAOC_04319 [Thalassiosira oceanica])

HSP 1 Score: 113.2 bits (282), Expect = 6.900e-22
Identity = 56/104 (53.85%), Postives = 78/104 (75.00%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            M+ +G  +G+NKG   E+ E   +P+  KG L K+  L RE+ R+V GL PYE+RILD+IK+GGS A+K++YKFAKRRLG+H+RA+ KRE+IK    K+RA+QA
Sbjct:    1 MARSGIAKGINKGHITEQRERAAKPSRTKGKLGKRTALCREIAREVAGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRAVAKREDIKAINSKMRAKQA 104
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: XP_002178434.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50099.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 112.8 bits (281), Expect = 9.000e-22
Identity = 56/105 (53.33%), Postives = 79/105 (75.24%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAA 149
            M+ TG  +G N G   E+ ++  +P++RKG L K+  L R + R+VVGL PYE+RILD+IK+GG+ A+K++YKFAKRRLG+H+RAL+KRE+IK    + RAR AA
Sbjct:    1 MARTGYAKGANSGHVTEQRDLKPKPSSRKGKLGKRTALTRAIAREVVGLAPYERRILDMIKTGGASADKRIYKFAKRRLGSHKRALQKREDIKAVNAQQRARAAA 105
[Close]
BLAST of NO03G00290 vs. NCBI_GenBank
Match: OEU08340.1 (60S ribosomal protein-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 105.9 bits (263), Expect = 1.100e-19
Identity = 55/104 (52.88%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQA 148
            M+ TG  +G+  G    +     +P+ RKG   K+  L RE+ R+VVGL PYE+RILD+IK+GGS A+K++YKFAKRRLG+H+RAL KRE+IK+   K RAR A
Sbjct:    1 MARTGYAKGVASGHVTTERPKKVKPSHRKGQSSKRTLLCREIAREVVGLSPYERRILDMIKTGGSAADKRIYKFAKRRLGSHKRALAKREDIKEINSKQRARAA 104
The following BLAST results are available for this feature:
BLAST of NO03G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009829073.11.200e-2967.31hypothetical protein H257_05793 [Aphanomyces astac... [more]
OQR92584.11.200e-2967.31hypothetical protein ACHHYP_03493 [Achlya hypogyna... [more]
XP_008875839.15.800e-2965.38hypothetical protein H310_11067 [Aphanomyces invad... [more]
CAQ52401.17.300e-2465.2260S ribosomal protein L36, partial [Laminaria digi... [more]
XP_009039662.12.800e-2362.37hypothetical protein AURANDRAFT_30566 [Aureococcus... [more]
CBJ30571.13.600e-2367.0560S ribosomal protein L36 [Ectocarpus siliculosus][more]
XP_002289404.14.000e-2255.77RL36, ribosomal protein 36 60S large ribosomal sub... [more]
EJK74033.16.900e-2253.85hypothetical protein THAOC_04319 [Thalassiosira oc... [more]
XP_002178434.19.000e-2253.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU08340.11.100e-1952.8860S ribosomal protein-like protein [Fragilariopsis... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005856NSK005856Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00290.1NO03G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611950gene_10319Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00290.1NO03G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00290 ID=NO03G00290|Name=NO03G00290|organism=Nannochloropsis oceanica|type=gene|length=1386bp
CGACGCGCAACGAATAAGGACATAAAGGGAAGAATGACCCGAGAGAGGCC
CAAGGCGTCGACCCGGCGGCCACCAGCAGCCATCCCCTTCTCTCGTCCTC
CTTCCATCACACATGCCCTTCTTTCCGTGCATGCACGGATGTTGAGGGCT
ATGACCACCACGCAGCTTGCCAAAGAGATGCAGGCACATTAAGTGTGCGG
TGCCGTGTCGATGGAAGGGACAGATGGATGGCGGCTATGCCCCGAATGGC
CTCCCCTGTCTCCCTCGCCCTCCTTCCACCACCGCTCGCCCACACACGAC
ACATTCTCATCACCCTTTCTCCTCCCCCACATCCACAACTCCACATACAG
ACAGCCATGTCTAGCACCGGTACCATCCGTGGCCTGAACAAGGGGTTCCC
GGTCGAGAAGCTCGAGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGGgtaa
gtcttgatgagaaagagagaaaggagggaggcgtggaggagtgtaagtgc
atgcagggcactgcgatctccagcatcatcgtgtctgagtctggcacatg
acagagaaggggatagagcggtagaaacaggctgtgtagtgtttctctaa
gagccccagcgcttattatgtcagcctatcaagcactcatctatctgccc
ttttctgcctcgcccctcctttcctgttattcccgcagACCCTGGTCAAG
AAGGTCAAGCTCGTCCGTGAGGTTATTCGGGACGTAGTGGGCCTCATGCC
CTACGAGAAGCGCATCCTTGATGTCATCAAAAGCGGTGGCTCTGGTGCTG
AGAAGAAGgtacgtgtagggtcagtggggtatgtgacgatcacggtaaaa
gggcttacttgctcctccttcgacagctaccatgacatgcggacattgtt
ccctttttcgcaggcactctcgcatttcccccttcttccggccgtacccc
gtataaaaccccctctcagcccctcacatcctcccctcccttcttcccac
ccgtccccctcgtcttctccagGTGTATAAGTTCGCCAAGCGGCGGTTGG
GTACCCACCGTCGCGCCCTGAAGAAGCGTGAGGAAATCAAGGACTACTAC
GGCAAGCTCCGTGCCCGTCAGGCGGCCCACTAAATTTACAGCTTGCACTA
GGCATACCTACATGGACACCCGCTTGGTAGATAGAGGATGGAGAGAAGGT
CCTTTTTTACGTCTCTCCCCGGCATTTTGGTGCCATGAGAAGTGGAGGAA
GGGGGAGAGGGGGTGGGTGGGAGGTGTGTAGGTAAGCGGGGCCGTGAGCC
TGTTGATGGCGATGAGGGCAAGGAGGAAAGAAATATCAACATGGACCAAG
CCTCGTGATACCTGACGAAGAGGCTCTTGGGATTGA
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protein sequence of NO03G00290.1

>NO03G00290.1-protein ID=NO03G00290.1-protein|Name=NO03G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAAMPRMASPVSLALLPPPLAHTRHILITLSPPPHPQLHIQTAMSSTGTI
RGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRIL
DVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH*
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Synonyms
Publications