NO03G00290.1, NO03G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00290.1
Unique NameNO03G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr3:88364..89749 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:88364..89749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00290.1 vs.
Match: XP_005853418.1 (large subunit ribosomal protein L36e [Nannochloropsis gaditana CCMP526]; EKU22942.1 large subunit ribosomal protein L36e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 194.5 bits (493), Expect = 2.300e-46
Identity = 98/106 (92.45%), Postives = 104/106 (98.11%), Query Frame = 0 
Query:   44 MSSTGTIRGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRILDVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH 150
            MSSTGTIRG+NKG+PV+KLEVPKRPA RKGTLVKKVKLVREV+RDVVGLMPYEKRILDVIK+GGSGAEKKVYKFAKRRLGTHRRALKKREEIK+YY KLRARQAAH
Sbjct:    1 MSSTGTIRGINKGYPVQKLEVPKRPAGRKGTLVKKVKLVREVVRDVVGLMPYEKRILDVIKTGGSGAEKKVYKFAKRRLGTHRRALKKREEIKEYYSKLRARQAAH 106
The following BLAST results are available for this feature:
BLAST of NO03G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853418.12.300e-4692.45large subunit ribosomal protein L36e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00290NO03G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00290.1NO03G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00290.1.cds1NO03G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00290.1.cds2NO03G00290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00290.1.cds3NO03G00290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00290.1 ID=NO03G00290.1|Name=NO03G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
CGACGCGCAACGAATAAGGACATAAAGGGAAGAATGACCCGAGAGAGGCC
CAAGGCGTCGACCCGGCGGCCACCAGCAGCCATCCCCTTCTCTCGTCCTC
CTTCCATCACACATGCCCTTCTTTCCGTGCATGCACGGATGTTGAGGGCT
ATGACCACCACGCAGCTTGCCAAAGAGATGCAGGCACATTAAGTGTGCGG
TGCCGTGTCGATGGAAGGGACAGATGGATGGCGGCTATGCCCCGAATGGC
CTCCCCTGTCTCCCTCGCCCTCCTTCCACCACCGCTCGCCCACACACGAC
ACATTCTCATCACCCTTTCTCCTCCCCCACATCCACAACTCCACATACAG
ACAGCCATGTCTAGCACCGGTACCATCCGTGGCCTGAACAAGGGGTTCCC
GGTCGAGAAGCTCGAGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGGACCC
TGGTCAAGAAGGTCAAGCTCGTCCGTGAGGTTATTCGGGACGTAGTGGGC
CTCATGCCCTACGAGAAGCGCATCCTTGATGTCATCAAAAGCGGTGGCTC
TGGTGCTGAGAAGAAGGTGTATAAGTTCGCCAAGCGGCGGTTGGGTACCC
ACCGTCGCGCCCTGAAGAAGCGTGAGGAAATCAAGGACTACTACGGCAAG
CTCCGTGCCCGTCAGGCGGCCCACTAAATTTACAGCTTGCACTAGGCATA
CCTACATGGACACCCGCTTGGTAGATAGAGGATGGAGAGAAGGTCCTTTT
TTACGTCTCTCCCCGGCATTTTGGTGCCATGAGAAGTGGAGGAAGGGGGA
GAGGGGGTGGGTGGGAGGTGTGTAGGTAAGCGGGGCCGTGAGCCTGTTGA
TGGCGATGAGGGCAAGGAGGAAAGAAATATCAACATGGACCAAGCCTCGT
GATACCTGACGAAGAGGCTCTTGGGATTGA
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protein sequence of NO03G00290.1

>NO03G00290.1-protein ID=NO03G00290.1-protein|Name=NO03G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAAMPRMASPVSLALLPPPLAHTRHILITLSPPPHPQLHIQTAMSSTGTI
RGLNKGFPVEKLEVPKRPAARKGTLVKKVKLVREVIRDVVGLMPYEKRIL
DVIKSGGSGAEKKVYKFAKRRLGTHRRALKKREEIKDYYGKLRARQAAH*
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mRNA from alignment at chr3:88364..89749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00290.1 ID=NO03G00290.1|Name=NO03G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr3:88364..89749+ (Nannochloropsis oceanica)
CGACGCGCAACGAATAAGGACATAAAGGGAAGAATGACCCGAGAGAGGCC
CAAGGCGTCGACCCGGCGGCCACCAGCAGCCATCCCCTTCTCTCGTCCTC
CTTCCATCACACATGCCCTTCTTTCCGTGCATGCACGGATGTTGAGGGCT
ATGACCACCACGCAGCTTGCCAAAGAGATGCAGGCACATTAAGTGTGCGG
TGCCGTGTCGATGGAAGGGACAGATGGATGGCGGCTATGCCCCGAATGGC
CTCCCCTGTCTCCCTCGCCCTCCTTCCACCACCGCTCGCCCACACACGAC
ACATTCTCATCACCCTTTCTCCTCCCCCACATCCACAACTCCACATACAG
ACAGCCATGTCTAGCACCGGTACCATCCGTGGCCTGAACAAGGGGTTCCC
GGTCGAGAAGCTCGAGGTGCCCAAGCGGCCAGCGGCCCGCAAGGGGGTAA
GTCTTGATGAGAAAGAGAGAAAGGAGGGAGGCGTGGAGGAGTGTAAGTGC
ATGCAGGGCACTGCGATCTCCAGCATCATCGTGTCTGAGTCTGGCACATG
ACAGAGAAGGGGATAGAGCGGTAGAAACAGGCTGTGTAGTGTTTCTCTAA
GAGCCCCAGCGCTTATTATGTCAGCCTATCAAGCACTCATCTATCTGCCC
TTTTCTGCCTCGCCCCTCCTTTCCTGTTATTCCCGCAGACCCTGGTCAAG
AAGGTCAAGCTCGTCCGTGAGGTTATTCGGGACGTAGTGGGCCTCATGCC
CTACGAGAAGCGCATCCTTGATGTCATCAAAAGCGGTGGCTCTGGTGCTG
AGAAGAAGGTACGTGTAGGGTCAGTGGGGTATGTGACGATCACGGTAAAA
GGGCTTACTTGCTCCTCCTTCGACAGCTACCATGACATGCGGACATTGTT
CCCTTTTTCGCAGGCACTCTCGCATTTCCCCCTTCTTCCGGCCGTACCCC
GTATAAAACCCCCTCTCAGCCCCTCACATCCTCCCCTCCCTTCTTCCCAC
CCGTCCCCCTCGTCTTCTCCAGGTGTATAAGTTCGCCAAGCGGCGGTTGG
GTACCCACCGTCGCGCCCTGAAGAAGCGTGAGGAAATCAAGGACTACTAC
GGCAAGCTCCGTGCCCGTCAGGCGGCCCACTAAATTTACAGCTTGCACTA
GGCATACCTACATGGACACCCGCTTGGTAGATAGAGGATGGAGAGAAGGT
CCTTTTTTACGTCTCTCCCCGGCATTTTGGTGCCATGAGAAGTGGAGGAA
GGGGGAGAGGGGGTGGGTGGGAGGTGTGTAGGTAAGCGGGGCCGTGAGCC
TGTTGATGGCGATGAGGGCAAGGAGGAAAGAAATATCAACATGGACCAAG
CCTCGTGATACCTGACGAAGAGGCTCTTGGGATTGA
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Coding sequence (CDS) from alignment at chr3:88364..89749+

>NO03G00290.1 ID=NO03G00290.1|Name=NO03G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr3:88364..89749+ (Nannochloropsis oceanica)
ATGGCGGCTATGCCCCGAATGGCCTCCCCTGTCTCCCTCGCCCTCCTTCC
ACCACCGCTCGCCCACACACGACACATTCTCATCACCCTTTCTCCTCCCC
CACATCCACAACTCCACATACAGACAGCCATGTCTAGCACCGGTACCATC
CGTGGCCTGAACAAGGGGTTCCCGGTCGAGAAGCTCGAGGTGCCCAAGCG
GCCAGCGGCCCGCAAGGGGACCCTGGTCAAGAAGGTCAAGCTCGTCCGTG
AGGTTATTCGGGACGTAGTGGGCCTCATGCCCTACGAGAAGCGCATCCTT
GATGTCATCAAAAGCGGTGGCTCTGGTGCTGAGAAGAAGGTGTATAAGTT
CGCCAAGCGGCGGTTGGGTACCCACCGTCGCGCCCTGAAGAAGCGTGAGG
AAATCAAGGACTACTACGGCAAGCTCCGTGCCCGTCAGGCGGCCCACTAA
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Synonyms
Publications