NO02G06040, NO02G06040 (gene) Nannochloropsis oceanica

Overview
NameNO02G06040
Unique NameNO02G06040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1284
Alignment locationchr2:1616926..1618209 +

Link to JBrowse

Properties
Property NameValue
DescriptionMajor facilitator superfamily domain-containing protein 1 isoform 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1616926..1618209 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO02G06040 vs. NCBI_GenBank
Match: EWM22710.1 (major facilitator superfamily domain-containing protein 1 isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 124.4 bits (311), Expect = 4.000e-25
Identity = 80/204 (39.22%), Postives = 116/204 (56.86%), Query Frame = 0 
Query:    2 YVALTGLQTFSVDFLQTDLGLSARRASFSASIFDVAGIFLGPPLGKWVDRELGKGGRAGRRKGSW---LWPPGSTQIWGIAMTAVGLLLPIVMLQSWLGGFILVSLGFAMATAAMWPIMPLFVPLESLGLALGVTTSLLEAGILGTNILIGQLVGDGDGYQKAGLPLLLA------IVLLALGSTLLMIPRLNVVLKAEGSPEE 197
            Y+A   L+TF+VD+L++DLG  A  AS  AS+  +  +FLGP  G  VD EL K G  G+    W   L PPG+TQ W + +T  G+L   +    W  GF LVS+G+AMA AA+W  +P  V   SLGLA GV  ++++  I+ T ++IG+L+  G  Y+ A  P+L+       +  LAL   L+   +LN V+ A    E+
Sbjct:  433 YMAFVPLETFAVDYLKSDLGYKASTASLGASLVMLGSVFLGPFFGLRVDIELWKKGVPGQ----WTRRLCPPGATQAWAMFLTGTGILTVTLAPTKWPWGFALVSIGYAMACAALWSSVPEVVKARSLGLAFGVIHAVMDVMIMVTEVVIGRLLDTGHTYESAVWPMLVGFTTAGFLATLALMHVLMTQVKLNAVIAAMTDNED 632
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BLAST of NO02G06040 vs. NCBI_GenBank
Match: XP_005855840.1 (major facilitator superfamily domain-containing protein 1 isoform 1 [Nannochloropsis gaditana CCMP526] >EKU20513.1 major facilitator superfamily domain-containing protein 1 isoform 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.9 bits (307), Expect = 1.200e-24
Identity = 79/198 (39.90%), Postives = 114/198 (57.58%), Query Frame = 0 
Query:    2 YVALTGLQTFSVDFLQTDLGLSARRASFSASIFDVAGIFLGPPLGKWVDRELGKGGRAGRRKGSW---LWPPGSTQIWGIAMTAVGLLLPIVMLQSWLGGFILVSLGFAMATAAMWPIMPLFVPLESLGLALGVTTSLLEAGILGTNILIGQLVGDGDGYQKAGLPLLLA------IVLLALGSTLLMIPRLNVVLKA 191
            Y+A   L+TF+VD+L++DLG  A  AS  AS+  +  +FLGP  G  VD EL K G  G+    W   L PPG+TQ W + +T  G+L   +    W  GF LVS+G+AMA AA+W  +P  V   SLGLA GV  ++++  I+ T ++IG+L+  G  Y+ A  P+L+       +  LAL   L+   +LN V+ A
Sbjct:  433 YMAFVPLETFAVDYLKSDLGYKASTASLGASLVMLGSVFLGPFFGLRVDIELWKKGVPGQ----WTRRLCPPGATQAWAMFLTGTGILTVTLAPTKWPWGFALVSIGYAMACAALWSSVPEVVKARSLGLAFGVIHAVMDVMIMVTEVVIGRLLDTGHTYESAVWPMLVGFTTAGFLATLALMHVLMKQVKLNAVIAA 626
The following BLAST results are available for this feature:
BLAST of NO02G06040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22710.14.000e-2539.22major facilitator superfamily domain-containing pr... [more]
XP_005855840.11.200e-2439.90major facilitator superfamily domain-containing pr... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06040.1NO02G06040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06040.1NO02G06040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06040 ID=NO02G06040|Name=NO02G06040|organism=Nannochloropsis oceanica|type=gene|length=1284bp
GAAGGAGGGAAGGAGGATGGGATACGGATTGCCTTGTCCAGTAGACTCAT
TATTCTCTCTCTCTCTCTCTCTCTCTCTTCCCTCCTCCGCAGGTGGCCAT
TAGCGCCATGTATGTGGCGCTCACGGGCCTACAGACCTTCAGTGTGGATT
TTTTGCAGACGGACCTTGGCCTTTCCGCTCGGCGTGCTTCCTTCTCTGCG
TCCATATTCGACGTGGCGGGTATCTTTTTGGGCCCACCGTTGGGAAAATG
GGTGGATCGGGAGCTGGGAAAGGGAGGGAGGGCGGGAAGGAGGAAGGGGA
GTTGGCTGTGGCCTCCGGGGTCGACGCAAATCTGGGGCATAGCAATGACG
GCCGTGGGGTTGCTCCTGCCGATCGTGATGCTGCAGAGgtgagggggagg
gaagagaaggaagggaggaaggaaaagagggaggcttacggactcacgtg
catggctccccttgtgcctacccttgcatcacaccttcccttcctctcag
CTGGCTCGGTGGCTTCATCCTCGTCTCTTTGGGATTCGCGATGGCGACTG
CAGCCATGTGGCCCATTATGCCCCTCTTCGTACCCTTGGAGAGTCTTGGA
CTAGCCTTGGGCGTCACGACATCCTTGTTGGAAGCAGgtagagagggagg
aaggggaggaagggggggagagagggagggagtaaaagaaaaagaactgg
aaaggccgatcgaatgggtatcccgacagaaggatatcttgcacagcgtg
aaggaggaacgacaggagggcggggggaaaggaggcgagacgaagaataa
aggaccttcttgttaccgaatattggtaccaccaagatcataattcaaat
cataatcatcattaaaatcataaccataatcgtaatcgcaatcaaaatta
tcatcattaccacagGCATCCTTGGCACAAATATTCTGATAGGACAGCTC
GTCGGTGATGGCGACGGCTACCAGAAAGCTGGCCTCCCCCTCCTCCTCGC
CATAGTCCTCCTGGCGCTCGGATCTACCCTGCTCATGATTCCACGTCTGA
ATGTCGTGCTTAAGGCCGAGGGGTCGCCGGAGGAAATCGGGAAGTGAGGG
AGGGGAAGAGACAATGAAGGAGGGAATGGAGGGAAGAAATGGATCAAAAA
TGAACATGAAAGGAATCCTGCTTCTCATGGCATAATAGATATATTAGTTT
GTTAATAACGAGTGTATTAAACAGACTAGAGCTGAAACGGAAGGTATACC
AAGAAAGAAATTCGTTGATTCGAAGGGCCCAGGG
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protein sequence of NO02G06040.1

>NO02G06040.1-protein ID=NO02G06040.1-protein|Name=NO02G06040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MYVALTGLQTFSVDFLQTDLGLSARRASFSASIFDVAGIFLGPPLGKWVD
RELGKGGRAGRRKGSWLWPPGSTQIWGIAMTAVGLLLPIVMLQSWLGGFI
LVSLGFAMATAAMWPIMPLFVPLESLGLALGVTTSLLEAGILGTNILIGQ
LVGDGDGYQKAGLPLLLAIVLLALGSTLLMIPRLNVVLKAEGSPEEIGK*
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Synonyms
Publications