NO02G05990, NO02G05990 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27804.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 142.9 bits (359), Expect = 1.300e-30 Identity = 87/201 (43.28%), Postives = 116/201 (57.71%), Query Frame = 0 Query: 9 MLGTAAAFVKP-TLPSAGSRTRAGALRMNLAEIELEAGKTSPFPEG--FDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207 ++ ++ AFV P + S + +L+M+ + +PF +G FDPLGLS + ++KKWREAE+KHGRVAMLA LG V E YHP + + A+ HFQEI +P FW L + IE TI T +D T G+KEDYI G+LG DPL ++ +DE A + KELNNGRLAMI AG+ QE Sbjct: 14 LIASSTAFVAPMAVRSVAPAPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF-MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFD-TPSAVTGEGGLKEDYIPGDLGFDPLN-LKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQE 211
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27268.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 141.7 bits (356), Expect = 2.800e-30 Identity = 81/194 (41.75%), Postives = 115/194 (59.28%), Query Frame = 0 Query: 15 AFVKPTLPSAGSRTRAGALRMNLAEIELEAGKTSPFPEG--FDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207 AF+ PT + +R + A RM+ + +PF +G +DP+GLS + +++KKWREAE+KHGRVAMLA +G V EN+HPL+ + AIFHF+EI +P FW L I +E + I G+ E + T G++ DY+ G+LG DPL + EDE + KELN+GRLAMI G+ +QE Sbjct: 72 AFIVPTPTTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLF-LGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAE-LDPVTGEGGMRLDYVPGDLGFDPLGLAP-EDEHELNVMKTKELNHGRLAMIGITGMIVQE 262
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CEM23154.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 139.8 bits (351), Expect = 1.100e-29 Identity = 85/188 (45.21%), Postives = 111/188 (59.04%), Query Frame = 0 Query: 21 LPSAGSRTRAGALRMNLAEIELEAGKTSPFPEGFDPLGLSK--DKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207 LP+ R R ++ +I G +PFP GFDPLGL+ D E+K+WRE+ELKHGR+ MLA LG VQEN++PL F+ K AI HFQ++ +P FW ++ I IEA +I GW + + ++EDY G+LG DP + + D AF R KELNNGRLAMIA AGI QE Sbjct: 29 LPAPLRRFRQSSIPRMAVDISDLNGAVAPFPRGFDPLGLANGPDVDENEIKRWRESELKHGRLCMLAALGILVQENFNPL--FDGKITGPAINHFQQVP--FP-FWAIIVAGIFGIEAASIGKGWASPW--TNKLFALREDYEAGDLGFDPFNLTPS-DPAAFDELRAKELNNGRLAMIAVAGIVAQE 208
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27806.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 137.5 bits (345), Expect = 5.300e-29 Identity = 77/156 (49.36%), Postives = 96/156 (61.54%), Query Frame = 0 Query: 51 PEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207 P+ FDPLGLS + ++KKWREAE+KHGRVAMLA LG V E YHP + + A+ HFQEI +P FW L + +E TI T +D T G+KEDYI G+LG DPL ++ +DE A + KELNNGRLAMI AG+ QE Sbjct: 35 PQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF-MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFD-TPSAVTGEGGLKEDYIPGDLGFDPLN-LKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQE 187
BLAST of NO02G05990 vs. NCBI_GenBank
Match: XP_005852499.1 (light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526] >EKU23332.1 light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 136.7 bits (343), Expect = 9.000e-29 Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 0 Query: 37 LAEIEL-EAGKTSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWD--ENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLP 215 L E+E+ +AG ++PF FDPL K+ ++ KK RE+ELKHGRVAM+AVLG VQE +HPL ++ E A+ + + P F LF++ + E K+IA GWD E IAG+++DY+ G+L DPL +D+EAF+ R KELNNGR+AMIAA GI QE + G+P Sbjct: 541 LGELEVTKAGVSAPF-GFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFET--ALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCP-DDDEAFVRMRTKELNNGRMAMIAAIGIIGQE--LATGVP 715
BLAST of NO02G05990 vs. NCBI_GenBank
Match: EWM27041.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 136.7 bits (343), Expect = 9.000e-29 Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 0 Query: 37 LAEIEL-EAGKTSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWD--ENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLP 215 L E+E+ +AG ++PF FDPL K+ ++ KK RE+ELKHGRVAM+AVLG VQE +HPL ++ E A+ + + P F LF++ + E K+IA GWD E IAG+++DY+ G+L DPL +D+EAF+ R KELNNGR+AMIAA GI QE + G+P Sbjct: 56 LGELEVTKAGVSAPF-GFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFET--ALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCP-DDDEAFVRMRTKELNNGRMAMIAAIGIIGQE--LATGVP 230
BLAST of NO02G05990 vs. NCBI_GenBank
Match: AAP79202.1 (chlorophyll a/b-binding protein LI818 1, partial [Bigelowiella natans]) HSP 1 Score: 134.0 bits (336), Expect = 5.800e-28 Identity = 84/212 (39.62%), Postives = 116/212 (54.72%), Query Frame = 0 Query: 10 LGTAAAFVKPTLPSAGSRTRAGALRMNLAEIELEAGK------TSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDG-AIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLP 215 +GT A K P A A+R + ++ +A + T+P + +DP G +K S ELKK+REAE+ HGRV+ML VLG QE +HPL+G N +DG AI F EI + P FW +L I V E GW + G + ++++Y GN+G DPL + + + S +NKELNNGRLAM+A AG QE + NG P Sbjct: 10 VGTRARLSKAITPQAVRPQFNNAMRKVVRDVSRKAAEDTLGPGTAPLGKFWDPAGFTKGLSPNELKKYREAEITHGRVSMLGVLGFLTQEAFHPLFGGN---IDGPAIKQFDEITRMAPTFWYPVLLAIAVAELGRARLGWQDPTSGGAMFS-LRDEYEPGNIGFDPLNLKPSNPTD-LASIKNKELNNGRLAMLALAGFVAQE--LVNGKP 214
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27802.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 132.9 bits (333), Expect = 1.300e-27 Identity = 82/201 (40.80%), Postives = 114/201 (56.72%), Query Frame = 0 Query: 9 MLGTAAAFVKP-TLPSAGSRTRAGALRMNLAEIELEAGKTSPFPEG--FDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207 ++ ++ AFV P + SA + A AL+M+ + +PF +G FDPL LS E+K WREAE+KHGRVAMLA +G V E YHPL+ + A+ HFQEI +P FW L + IE TI + E T G++++Y G+LG DPL ++ +D+ + KELNNGRLAMI AG+ +QE Sbjct: 15 LIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLF-MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAE-PSPVTGEGGLRDEYSPGDLGFDPLN-LKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQE 212
BLAST of NO02G05990 vs. NCBI_GenBank
Match: PSC68059.1 (fucoxanthin chlorophyll a c [Micractinium conductrix]) HSP 1 Score: 131.7 bits (330), Expect = 2.900e-27 Identity = 75/167 (44.91%), Postives = 94/167 (56.29%), Query Frame = 0 Query: 45 GKTSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDG-----AIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207 G + PFP FDP +K ++K+WRE+EL HGRVAMLA LG V E F DG AI+ FQ+I+ V PLFW AL+ IG+ E +A GW G +K++Y G LG DPL ++ EDEE + KELNNGRLAMI AG +QE Sbjct: 67 GISEPFPNMFDPANFTKTAKPADIKRWRESELLHGRVAMLAALGFVVGEQLEDFPAF--MNWDGSVTGPAIYQFQQIEEVRPLFWEALVLCIGLAEVWRVAVGWATPTGNG--FNSLKDEYNPGFLGFDPLNLLP-EDEEEIRVLQTKELNNGRLAMIGIAGFVLQE 228
BLAST of NO02G05990 vs. NCBI_GenBank
Match: GAQ89003.1 (stress-related chlorophyll a/b binding protein [Klebsormidium nitens]) HSP 1 Score: 131.3 bits (329), Expect = 3.800e-27 Identity = 80/185 (43.24%), Postives = 101/185 (54.59%), Query Frame = 0 Query: 45 GKTSPFPEGFDPLGL-----SKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDG-AIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLPEFEFHRFAL 224 G T PFP FDP L S + KELK+WRE+E+ HGRVAMLA LG V E + G AI+HFQ+++N +FW L+F I + E+ + GW ST ++EDY GNLG DPL ++ D A ++KELNNGRLAMIA AG QE G+ E F R L Sbjct: 62 GVTLPFPNIFDPATLLARAASSARPIKELKRWRESEIVHGRVAMLATLGFIVGEQVEDFPARFFPHVTGPAIYHFQQVENEGAIFWEPLIFAIALAESYRVGLGW--ATPDSTNFNTLREDYEPGNLGFDPLGLLPT-DPAAKKDMQSKELNNGRLAMIAIAGFVAQELVSGQGIFEHLFKRLGL 243 The following BLAST results are available for this feature:
BLAST of NO02G05990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO02G05990 ID=NO02G05990|Name=NO02G05990|organism=Nannochloropsis oceanica|type=gene|length=1717bpback to top protein sequence of NO02G05990.1 >NO02G05990.1-protein ID=NO02G05990.1-protein|Name=NO02G05990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top Synonyms
Publications
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