NO02G05990, NO02G05990 (gene) Nannochloropsis oceanica

Overview
NameNO02G05990
Unique NameNO02G05990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1717
Alignment locationchr2:1601624..1603340 -

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Properties
Property NameValue
DescriptionLight harvesting complex protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1601624..1603340 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0009579thylakoid
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27804.1 (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 142.9 bits (359), Expect = 1.300e-30
Identity = 87/201 (43.28%), Postives = 116/201 (57.71%), Query Frame = 0
Query:    9 MLGTAAAFVKP-TLPSAGSRTRAGALRMNLAEIELEAGKTSPFPEG--FDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207
            ++ ++ AFV P  + S      + +L+M+     +     +PF +G  FDPLGLS   +  ++KKWREAE+KHGRVAMLA LG  V E YHP +      +  A+ HFQEI   +P FW   L  +  IE  TI T +D      T   G+KEDYI G+LG DPL  ++ +DE A    + KELNNGRLAMI  AG+  QE
Sbjct:   14 LIASSTAFVAPMAVRSVAPAPSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF-MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFD-TPSAVTGEGGLKEDYIPGDLGFDPLN-LKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQE 211          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27268.1 (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 141.7 bits (356), Expect = 2.800e-30
Identity = 81/194 (41.75%), Postives = 115/194 (59.28%), Query Frame = 0
Query:   15 AFVKPTLPSAGSRTRAGALRMNLAEIELEAGKTSPFPEG--FDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207
            AF+ PT  +  +R  + A RM+     +     +PF +G  +DP+GLS +   +++KKWREAE+KHGRVAMLA +G  V EN+HPL+      +  AIFHF+EI   +P FW   L  I  +E + I  G+ E +   T   G++ DY+ G+LG DPL +   EDE      + KELN+GRLAMI   G+ +QE
Sbjct:   72 AFIVPTPTTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLF-LGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAE-LDPVTGEGGMRLDYVPGDLGFDPLGLAP-EDEHELNVMKTKELNHGRLAMIGITGMIVQE 262          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CEM23154.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 139.8 bits (351), Expect = 1.100e-29
Identity = 85/188 (45.21%), Postives = 111/188 (59.04%), Query Frame = 0
Query:   21 LPSAGSRTRAGALRMNLAEIELEAGKTSPFPEGFDPLGLSK--DKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207
            LP+   R R  ++     +I    G  +PFP GFDPLGL+   D    E+K+WRE+ELKHGR+ MLA LG  VQEN++PL  F+ K    AI HFQ++   +P FW  ++  I  IEA +I  GW      +  +  ++EDY  G+LG DP  +  + D  AF   R KELNNGRLAMIA AGI  QE
Sbjct:   29 LPAPLRRFRQSSIPRMAVDISDLNGAVAPFPRGFDPLGLANGPDVDENEIKRWRESELKHGRLCMLAALGILVQENFNPL--FDGKITGPAINHFQQVP--FP-FWAIIVAGIFGIEAASIGKGWASPW--TNKLFALREDYEAGDLGFDPFNLTPS-DPAAFDELRAKELNNGRLAMIAVAGIVAQE 208          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27806.1 (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 137.5 bits (345), Expect = 5.300e-29
Identity = 77/156 (49.36%), Postives = 96/156 (61.54%), Query Frame = 0
Query:   51 PEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207
            P+ FDPLGLS   +  ++KKWREAE+KHGRVAMLA LG  V E YHP +      +  A+ HFQEI   +P FW   L  +  +E  TI T +D      T   G+KEDYI G+LG DPL  ++ +DE A    + KELNNGRLAMI  AG+  QE
Sbjct:   35 PQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFF-MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFD-TPSAVTGEGGLKEDYIPGDLGFDPLN-LKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQE 187          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: XP_005852499.1 (light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526] >EKU23332.1 light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.7 bits (343), Expect = 9.000e-29
Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 0
Query:   37 LAEIEL-EAGKTSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWD--ENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLP 215
            L E+E+ +AG ++PF   FDPL     K+ ++ KK RE+ELKHGRVAM+AVLG  VQE +HPL   ++ E   A+  +  +    P F    LF++ + E K+IA GWD  E       IAG+++DY+ G+L  DPL     +D+EAF+  R KELNNGR+AMIAA GI  QE  +  G+P
Sbjct:  541 LGELEVTKAGVSAPF-GFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFET--ALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCP-DDDEAFVRMRTKELNNGRMAMIAAIGIIGQE--LATGVP 715          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: EWM27041.1 (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 136.7 bits (343), Expect = 9.000e-29
Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 0
Query:   37 LAEIEL-EAGKTSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWD--ENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLP 215
            L E+E+ +AG ++PF   FDPL     K+ ++ KK RE+ELKHGRVAM+AVLG  VQE +HPL   ++ E   A+  +  +    P F    LF++ + E K+IA GWD  E       IAG+++DY+ G+L  DPL     +D+EAF+  R KELNNGR+AMIAA GI  QE  +  G+P
Sbjct:   56 LGELEVTKAGVSAPF-GFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFET--ALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCP-DDDEAFVRMRTKELNNGRMAMIAAIGIIGQE--LATGVP 230          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: AAP79202.1 (chlorophyll a/b-binding protein LI818 1, partial [Bigelowiella natans])

HSP 1 Score: 134.0 bits (336), Expect = 5.800e-28
Identity = 84/212 (39.62%), Postives = 116/212 (54.72%), Query Frame = 0
Query:   10 LGTAAAFVKPTLPSAGSRTRAGALRMNLAEIELEAGK------TSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDG-AIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLP 215
            +GT A   K   P A       A+R  + ++  +A +      T+P  + +DP G +K  S  ELKK+REAE+ HGRV+ML VLG   QE +HPL+G N   +DG AI  F EI  + P FW  +L  I V E      GW +   G    + ++++Y  GN+G DPL +  +   +   S +NKELNNGRLAM+A AG   QE  + NG P
Sbjct:   10 VGTRARLSKAITPQAVRPQFNNAMRKVVRDVSRKAAEDTLGPGTAPLGKFWDPAGFTKGLSPNELKKYREAEITHGRVSMLGVLGFLTQEAFHPLFGGN---IDGPAIKQFDEITRMAPTFWYPVLLAIAVAELGRARLGWQDPTSGGAMFS-LRDEYEPGNIGFDPLNLKPSNPTD-LASIKNKELNNGRLAMLALAGFVAQE--LVNGKP 214          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: CBJ27802.1 (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 132.9 bits (333), Expect = 1.300e-27
Identity = 82/201 (40.80%), Postives = 114/201 (56.72%), Query Frame = 0
Query:    9 MLGTAAAFVKP-TLPSAGSRTRAGALRMNLAEIELEAGKTSPFPEG--FDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207
            ++ ++ AFV P  + SA   + A AL+M+     +     +PF +G  FDPL LS      E+K WREAE+KHGRVAMLA +G  V E YHPL+      +  A+ HFQEI   +P FW   L  +  IE  TI   + E     T   G++++Y  G+LG DPL  ++ +D+      + KELNNGRLAMI  AG+ +QE
Sbjct:   15 LIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLF-MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAE-PSPVTGEGGLRDEYSPGDLGFDPLN-LKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQE 212          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: PSC68059.1 (fucoxanthin chlorophyll a c [Micractinium conductrix])

HSP 1 Score: 131.7 bits (330), Expect = 2.900e-27
Identity = 75/167 (44.91%), Postives = 94/167 (56.29%), Query Frame = 0
Query:   45 GKTSPFPEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDG-----AIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQE 207
            G + PFP  FDP   +K     ++K+WRE+EL HGRVAMLA LG  V E       F     DG     AI+ FQ+I+ V PLFW AL+  IG+ E   +A GW    G       +K++Y  G LG DPL ++  EDEE     + KELNNGRLAMI  AG  +QE
Sbjct:   67 GISEPFPNMFDPANFTKTAKPADIKRWRESELLHGRVAMLAALGFVVGEQLEDFPAF--MNWDGSVTGPAIYQFQQIEEVRPLFWEALVLCIGLAEVWRVAVGWATPTGNG--FNSLKDEYNPGFLGFDPLNLLP-EDEEEIRVLQTKELNNGRLAMIGIAGFVLQE 228          
BLAST of NO02G05990 vs. NCBI_GenBank
Match: GAQ89003.1 (stress-related chlorophyll a/b binding protein [Klebsormidium nitens])

HSP 1 Score: 131.3 bits (329), Expect = 3.800e-27
Identity = 80/185 (43.24%), Postives = 101/185 (54.59%), Query Frame = 0
Query:   45 GKTSPFPEGFDPLGL-----SKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWGFNEKEMDG-AIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLPEFEFHRFAL 224
            G T PFP  FDP  L     S  +  KELK+WRE+E+ HGRVAMLA LG  V E            + G AI+HFQ+++N   +FW  L+F I + E+  +  GW      ST    ++EDY  GNLG DPL ++   D  A    ++KELNNGRLAMIA AG   QE     G+ E  F R  L
Sbjct:   62 GVTLPFPNIFDPATLLARAASSARPIKELKRWRESEIVHGRVAMLATLGFIVGEQVEDFPARFFPHVTGPAIYHFQQVENEGAIFWEPLIFAIALAESYRVGLGW--ATPDSTNFNTLREDYEPGNLGFDPLGLLPT-DPAAKKDMQSKELNNGRLAMIAIAGFVAQELVSGQGIFEHLFKRLGL 243          
The following BLAST results are available for this feature:
BLAST of NO02G05990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ27804.11.300e-3043.28Light harvesting complex protein [Ectocarpus silic... [more]
CBJ27268.12.800e-3041.75Light harvesting complex protein [Ectocarpus silic... [more]
CEM23154.11.100e-2945.21unnamed protein product [Vitrella brassicaformis C... [more]
CBJ27806.15.300e-2949.36Light harvesting complex protein [Ectocarpus silic... [more]
XP_005852499.19.000e-2945.30light harvesting complex protein, partial [Nannoch... [more]
EWM27041.19.000e-2945.30light harvesting complex protein [Nannochloropsis ... [more]
AAP79202.15.800e-2839.62chlorophyll a/b-binding protein LI818 1, partial [... [more]
CBJ27802.11.300e-2740.80Light harvesting complex protein [Ectocarpus silic... [more]
PSC68059.12.900e-2744.91fucoxanthin chlorophyll a c [Micractinium conductr... [more]
GAQ89003.13.800e-2743.24stress-related chlorophyll a/b binding protein [Kl... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007306NSK007306Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05990.1NO02G05990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
LHCP21gene582Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05990.1NO02G05990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05990 ID=NO02G05990|Name=NO02G05990|organism=Nannochloropsis oceanica|type=gene|length=1717bp
ATGCGTGTCCTCTCTTTCCTCGCCATGCTCGGCACTGCCGCCGCTTTTGT
CAAGCCCACCCTCCCTTCTGCGGGGTCCCGCACCCGTGCCGGTGCCCTCC
Ggtaagtgagtgctatgtgtgttcaggtccctgcgcttgactgcattacc
cgtgtggttgaacccaaaagacgcgacgggaaaaacgaatatcaggcctg
tacgtgtgtttgtgtacaagttgcgggcctcttcccccgcatcgcctgcc
ttcccccctgtacaccctaatcaaccttcttacagagaagttcggtcgcg
ccgtacctttgatttcccctggcattgaaaccaagttccccaaaagatcg
tcctcttccttttcctcccgtggcagattcctatacccacattcctcgct
cacaacaccaacaccaacacgaacacgacaccaccatccccatcgtacct
tgagtcatgactggaccgtgcgtttctatcacctcaccgtccctcctttc
acccctctcccccccggccccatcttttctccttctcgaacgaggcatct
gttttaccttcgctcaccctctccgcttctcccctcttttcccctctccc
tcatccatcagCATGAACTTGGCTGAGATCGAACTGGAGGCCGGCAAGAC
CTCCCCCTTCCCTGAGGGCTTTGACCCCCTTGGCCTGTCCAAAGACAAGT
CCTTCAAGGAGCTCAAGAAATGGCGCGAAGCCGAGCTCAAACACGgtacg
tcacgccttccccccccccccccttttttcattccttcttcattggtctc
accacatgctcttcttcccgtcccttcccttctcctcaaccgacagGCCG
AGTGGCCATGCTTGCCGTGCTGGGCACCGCGGTGCAGGAGAACTACCACC
CCCTGTGGGGCTTTAACGAGAAGGAGATGGACGGCGCTATCTTCCACTTC
CAGGAAATCCAAAACGTTTACCCCCTTTTCTGGACTGCCCTCCTCTTCAT
CATCGGCGTCATCGAGGCCAAGACCATCGCCACAGGGTGGGACGAGAACA
TGGGCGGCTCCgtgagtaccttccattccttcctcccttcctctccttcc
ctccctccctctctctgtcctccaaacagtcaattgttgttttcttcagt
gtatgcttttcccctttcctcccaactcactccaataaccatctcgccct
ccttctctccctcctttccctccctattcaccagACCACCATCGCCGGCG
TGAAGGAGGATTACATCTGCGGCAACCTGGGCCTTGACCCCCTCAAGATC
ATCGAGAACGAGGACGAGGAGGCCTTCCTCTCCTACCGCAACAAGgtgtg
ctttccctcccacctcctctcccgccgtctatgggcctacagcttgtcta
gatcccattctcatcctgccccctccccccttcctccctctctctttcat
gctacagGAGCTCAACAACGGCCGACTTGCCATGATCGCCGCCGCCGGCA
TCACGATCCAGgttcgtccgcccttcccttccctccctccctccctccct
cccccttcctcgcttttcccaaccatccctgccccccgctcacccccttc
ctcctctacgatttccccccctccttgctcctacagGAGAAGTTTGTGAC
CAACGGCCTCCCCGAGTTCGAATTTCACCGATTCGCCCTCTCTGATGTCT
ACAACTTCTTCTTCTAA
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protein sequence of NO02G05990.1

>NO02G05990.1-protein ID=NO02G05990.1-protein|Name=NO02G05990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MRVLSFLAMLGTAAAFVKPTLPSAGSRTRAGALRMNLAEIELEAGKTSPF
PEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWG
FNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGS
TTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAA
GITIQEKFVTNGLPEFEFHRFALSDVYNFFF*
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Synonyms
Publications