NO02G05990.1, NO02G05990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G05990.1
Unique NameNO02G05990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length696
Alignment locationchr2:1601624..1603340 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1601624..1603340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G05990.1 vs.
Match: EWM30071.1 (light harvesting complex protein [Nannochloropsis gaditana])

HSP 1 Score: 442.6 bits (1137), Expect = 7.600e-121
Identity = 218/238 (91.60%), Postives = 229/238 (96.22%), Query Frame = 0 
Query:    1 MRVLSFLAMLGTAAAFVKPTLPSAGSRTRAGALRMNLAEIELEAGKTSPFPEGFDPLGLSKDKSFKELKKWREAELKHG-------RVAMLAVLGTAVQENYHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGSTTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAAGITIQEKFVTNGLPEFEFHRFALSDVYNFFF 232
            MRVLSFLA++GTAAAFVKPTLP+AGSRTRAGALRMNLAEIELEAGKTSPFP+GFDPLGLSKDKSFKELKKWREAELKHG       RVAMLAVLGTAVQEN+HPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIG+IEA+TI+TGWDENM GS+ IAGVKEDYICGNLGLDPLKIIEN+DEEAFLSYRNKELNNGRLAMIAAAGIT+QEKFVTNGLPEFEFHRFALSDVYNFFF
Sbjct:    1 MRVLSFLAIIGTAAAFVKPTLPAAGSRTRAGALRMNLAEIELEAGKTSPFPDGFDPLGLSKDKSFKELKKWREAELKHGMSLHPPRRVAMLAVLGTAVQENFHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGWDENMAGSSQIAGVKEDYICGNLGLDPLKIIENDDEEAFLSYRNKELNNGRLAMIAAAGITVQEKFVTNGLPEFEFHRFALSDVYNFFF 238
The following BLAST results are available for this feature:
BLAST of NO02G05990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30071.17.600e-12191.60light harvesting complex protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05990NO02G05990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G05990.1NO02G05990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G05990.1.cds1NO02G05990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05990.1.cds2NO02G05990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05990.1.cds3NO02G05990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05990.1.cds4NO02G05990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05990.1.cds5NO02G05990.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G05990.1.cds6NO02G05990.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G05990.1 ID=NO02G05990.1|Name=NO02G05990.1|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
ATGCGTGTCCTCTCTTTCCTCGCCATGCTCGGCACTGCCGCCGCTTTTGT
CAAGCCCACCCTCCCTTCTGCGGGGTCCCGCACCCGTGCCGGTGCCCTCC
GCATGAACTTGGCTGAGATCGAACTGGAGGCCGGCAAGACCTCCCCCTTC
CCTGAGGGCTTTGACCCCCTTGGCCTGTCCAAAGACAAGTCCTTCAAGGA
GCTCAAGAAATGGCGCGAAGCCGAGCTCAAACACGGCCGAGTGGCCATGC
TTGCCGTGCTGGGCACCGCGGTGCAGGAGAACTACCACCCCCTGTGGGGC
TTTAACGAGAAGGAGATGGACGGCGCTATCTTCCACTTCCAGGAAATCCA
AAACGTTTACCCCCTTTTCTGGACTGCCCTCCTCTTCATCATCGGCGTCA
TCGAGGCCAAGACCATCGCCACAGGGTGGGACGAGAACATGGGCGGCTCC
ACCACCATCGCCGGCGTGAAGGAGGATTACATCTGCGGCAACCTGGGCCT
TGACCCCCTCAAGATCATCGAGAACGAGGACGAGGAGGCCTTCCTCTCCT
ACCGCAACAAGGAGCTCAACAACGGCCGACTTGCCATGATCGCCGCCGCC
GGCATCACGATCCAGGAGAAGTTTGTGACCAACGGCCTCCCCGAGTTCGA
ATTTCACCGATTCGCCCTCTCTGATGTCTACAACTTCTTCTTCTAA
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protein sequence of NO02G05990.1

>NO02G05990.1-protein ID=NO02G05990.1-protein|Name=NO02G05990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MRVLSFLAMLGTAAAFVKPTLPSAGSRTRAGALRMNLAEIELEAGKTSPF
PEGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENYHPLWG
FNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGVIEAKTIATGWDENMGGS
TTIAGVKEDYICGNLGLDPLKIIENEDEEAFLSYRNKELNNGRLAMIAAA
GITIQEKFVTNGLPEFEFHRFALSDVYNFFF*
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mRNA from alignment at chr2:1601624..1603340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G05990.1 ID=NO02G05990.1|Name=NO02G05990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp|location=Sequence derived from alignment at chr2:1601624..1603340- (Nannochloropsis oceanica)
ATGCGTGTCCTCTCTTTCCTCGCCATGCTCGGCACTGCCGCCGCTTTTGT
CAAGCCCACCCTCCCTTCTGCGGGGTCCCGCACCCGTGCCGGTGCCCTCC
GGTAAGTGAGTGCTATGTGTGTTCAGGTCCCTGCGCTTGACTGCATTACC
CGTGTGGTTGAACCCAAAAGACGCGACGGGAAAAACGAATATCAGGCCTG
TACGTGTGTTTGTGTACAAGTTGCGGGCCTCTTCCCCCGCATCGCCTGCC
TTCCCCCCTGTACACCCTAATCAACCTTCTTACAGAGAAGTTCGGTCGCG
CCGTACCTTTGATTTCCCCTGGCATTGAAACCAAGTTCCCCAAAAGATCG
TCCTCTTCCTTTTCCTCCCGTGGCAGATTCCTATACCCACATTCCTCGCT
CACAACACCAACACCAACACGAACACGACACCACCATCCCCATCGTACCT
TGAGTCATGACTGGACCGTGCGTTTCTATCACCTCACCGTCCCTCCTTTC
ACCCCTCTCCCCCCCGGCCCCATCTTTTCTCCTTCTCGAACGAGGCATCT
GTTTTACCTTCGCTCACCCTCTCCGCTTCTCCCCTCTTTTCCCCTCTCCC
TCATCCATCAGCATGAACTTGGCTGAGATCGAACTGGAGGCCGGCAAGAC
CTCCCCCTTCCCTGAGGGCTTTGACCCCCTTGGCCTGTCCAAAGACAAGT
CCTTCAAGGAGCTCAAGAAATGGCGCGAAGCCGAGCTCAAACACGGTACG
TCACGCCTTCCCCCCCCCCCCCCTTTTTTCATTCCTTCTTCATTGGTCTC
ACCACATGCTCTTCTTCCCGTCCCTTCCCTTCTCCTCAACCGACAGGCCG
AGTGGCCATGCTTGCCGTGCTGGGCACCGCGGTGCAGGAGAACTACCACC
CCCTGTGGGGCTTTAACGAGAAGGAGATGGACGGCGCTATCTTCCACTTC
CAGGAAATCCAAAACGTTTACCCCCTTTTCTGGACTGCCCTCCTCTTCAT
CATCGGCGTCATCGAGGCCAAGACCATCGCCACAGGGTGGGACGAGAACA
TGGGCGGCTCCGTGAGTACCTTCCATTCCTTCCTCCCTTCCTCTCCTTCC
CTCCCTCCCTCTCTCTGTCCTCCAAACAGTCAATTGTTGTTTTCTTCAGT
GTATGCTTTTCCCCTTTCCTCCCAACTCACTCCAATAACCATCTCGCCCT
CCTTCTCTCCCTCCTTTCCCTCCCTATTCACCAGACCACCATCGCCGGCG
TGAAGGAGGATTACATCTGCGGCAACCTGGGCCTTGACCCCCTCAAGATC
ATCGAGAACGAGGACGAGGAGGCCTTCCTCTCCTACCGCAACAAGGTGTG
CTTTCCCTCCCACCTCCTCTCCCGCCGTCTATGGGCCTACAGCTTGTCTA
GATCCCATTCTCATCCTGCCCCCTCCCCCCTTCCTCCCTCTCTCTTTCAT
GCTACAGGAGCTCAACAACGGCCGACTTGCCATGATCGCCGCCGCCGGCA
TCACGATCCAGGTTCGTCCGCCCTTCCCTTCCCTCCCTCCCTCCCTCCCT
CCCCCTTCCTCGCTTTTCCCAACCATCCCTGCCCCCCGCTCACCCCCTTC
CTCCTCTACGATTTCCCCCCCTCCTTGCTCCTACAGGAGAAGTTTGTGAC
CAACGGCCTCCCCGAGTTCGAATTTCACCGATTCGCCCTCTCTGATGTCT
ACAACTTCTTCTTCTAA
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Coding sequence (CDS) from alignment at chr2:1601624..1603340-

>NO02G05990.1 ID=NO02G05990.1|Name=NO02G05990.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr2:1601624..1603340- (Nannochloropsis oceanica)
ATGCGTGTCCTCTCTTTCCTCGCCATGCTCGGCACTGCCGCCGCTTTTGT
CAAGCCCACCCTCCCTTCTGCGGGGTCCCGCACCCGTGCCGGTGCCCTCC
GCATGAACTTGGCTGAGATCGAACTGGAGGCCGGCAAGACCTCCCCCTTC
CCTGAGGGCTTTGACCCCCTTGGCCTGTCCAAAGACAAGTCCTTCAAGGA
GCTCAAGAAATGGCGCGAAGCCGAGCTCAAACACGGCCGAGTGGCCATGC
TTGCCGTGCTGGGCACCGCGGTGCAGGAGAACTACCACCCCCTGTGGGGC
TTTAACGAGAAGGAGATGGACGGCGCTATCTTCCACTTCCAGGAAATCCA
AAACGTTTACCCCCTTTTCTGGACTGCCCTCCTCTTCATCATCGGCGTCA
TCGAGGCCAAGACCATCGCCACAGGGTGGGACGAGAACATGGGCGGCTCC
ACCACCATCGCCGGCGTGAAGGAGGATTACATCTGCGGCAACCTGGGCCT
TGACCCCCTCAAGATCATCGAGAACGAGGACGAGGAGGCCTTCCTCTCCT
ACCGCAACAAGGAGCTCAACAACGGCCGACTTGCCATGATCGCCGCCGCC
GGCATCACGATCCAGGAGAAGTTTGTGACCAACGGCCTCCCCGAGTTCGA
ATTTCACCGATTCGCCCTCTCTGATGTCTACAACTTCTTCTTCTAA
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Synonyms
Publications