NO02G05840, NO02G05840 (gene) Nannochloropsis oceanica

Overview
NameNO02G05840
Unique NameNO02G05840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1071
Alignment locationchr2:1560828..1561898 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1560828..1561898 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019410Nicotinamide_N-MeTfrase-like
Homology
The following BLAST results are available for this feature:
BLAST of NO02G05840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL017nonsL017Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR001ngnoR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05840.1NO02G05840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575626gene_1175Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05840.1NO02G05840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05840 ID=NO02G05840|Name=NO02G05840|organism=Nannochloropsis oceanica|type=gene|length=1071bp
ATGCCACGGACCAAAGTAGGCTACCGTCTGCGTCACTATGAAGAAGAGGA
CGACTATAATACAATCGTGTGGGTGGACGAGGATCCTGCACTGGTGTTGC
TAGGGGGAGAAGTTTGGCCAGCCTCCTTCATCGTATGCGAGCACGTTGCC
TCTTTCCTTCGCAATGCTTCTGGTGCGCGTTCATCTCTGAGTATTGTTGA
ACTTGGGGCGGGCACGGGACTCTGCGGTTTGGTTACCCTTGCAACGGCCT
TGGAAAGTATTACTGGGTCTGTTCACTGCTTTCTCACCGACGAATCTCCG
GCATTAAGTGACATAAATCTCAGCCACTTTAAAAGTACCTGGCGGCAGGC
CAAGGCACATGTTGATGCCGCCTTTTCCCCCTCCTCTTTTCCCTCGAATT
CCATCACTGCCGCCTCGTCCTCTTCCCCATCATCGTTTTTTTCCGCCCAC
GCATTGGAGCTTTCCTGGGGGTGTAATTCAAACACTCTACCCTCCCCCCT
CGTCGAGGCCTGCCAGTCTTCGGAACAAGTCTTAATTCTAGGATGTGAGG
TTAGCCCGATGCTGCAAACCCAAGCCGCACTCGTAGAAACGGTGTTAGCA
TTGCTTACCGTCTCGTCGTTGCCAGCTGGGTCGTCGTCTTCCTCGTTGTC
CTCTTCTCCACCTTCCACCCGTCCTTCCACCCCTCGCAGCACTCCATCCG
GACCATGTACCACCACCTCCCCGAAAACCACGGCGGTCGCGATCCTGACC
ATTGACGCCTGTGTGAAGGGCACGACATACCCATCCACATGCATGCATCC
AAATCCCTGCGCGGGCCATCGTTTCATAAAACTAGTGGAGGACAGGGGGG
GGATGAAATGGGATATCGCCGGTGTGTGGAGCGTGTCCCAGGTGCAGGAG
GCGTGTCAGCGGCGGAGGAGGAGAGGAGGTGTGTGCGTTACTGACGGGAG
CGGTGGAACAAAGAAAAAAGGCGTCATGGGAGAGACCGAGAGGGGCAGCC
ATGACGATCGGGAGTTCGCAGTCACGGCGCCAGAGGGATTGGTGATCGTG
CATATCAGCCTTGAGGCTTGA
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protein sequence of NO02G05840.1

>NO02G05840.1-protein ID=NO02G05840.1-protein|Name=NO02G05840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MPRTKVGYRLRHYEEEDDYNTIVWVDEDPALVLLGGEVWPASFIVCEHVA
SFLRNASGARSSLSIVELGAGTGLCGLVTLATALESITGSVHCFLTDESP
ALSDINLSHFKSTWRQAKAHVDAAFSPSSFPSNSITAASSSSPSSFFSAH
ALELSWGCNSNTLPSPLVEACQSSEQVLILGCEVSPMLQTQAALVETVLA
LLTVSSLPAGSSSSSLSSSPPSTRPSTPRSTPSGPCTTTSPKTTAVAILT
IDACVKGTTYPSTCMHPNPCAGHRFIKLVEDRGGMKWDIAGVWSVSQVQE
ACQRRRRRGGVCVTDGSGGTKKKGVMGETERGSHDDREFAVTAPEGLVIV
HISLEA*
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Synonyms
Publications